Wall clock time and date at job start Tue Mar 31 2020 21:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46674 * 2 1 4 4 C 1.50707 * 109.47157 * 119.99534 * 2 1 3 5 5 N 1.31073 * 126.65801 * 299.98450 * 4 2 1 6 6 N 1.28839 * 107.98794 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39875 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80455 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43604 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47623 * 90.02147 * 9 8 7 11 11 O 1.21290 * 119.99651 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00233 * 180.02562 * 10 9 8 13 13 C 1.46927 * 120.63147 * 0.02562 * 12 10 9 14 14 C 1.53187 * 108.77767 * 126.37283 * 13 12 10 15 15 C 1.53039 * 109.31557 * 54.63148 * 14 13 12 16 16 H 1.08994 * 109.45833 * 58.63988 * 15 14 13 17 17 N 1.46501 * 109.45998 * 178.61930 * 15 14 13 18 18 C 1.36939 * 119.99753 * 274.99860 * 17 15 14 19 19 H 1.07997 * 119.99534 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99781 * 180.02562 * 18 17 15 21 21 N 1.31608 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99568 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47199 * 89.99968 * 22 20 18 24 24 H 1.48502 * 109.46717 * 209.99880 * 22 20 18 25 25 H 1.48498 * 109.47130 * 329.99833 * 22 20 18 26 26 C 1.53046 * 109.53781 * 298.63779 * 15 14 13 27 27 C 1.46926 * 120.62677 * 179.71956 * 12 10 9 28 28 H 1.08996 * 109.59534 * 353.42136 * 27 12 10 29 29 C 1.53003 * 109.58700 * 113.84334 * 27 12 10 30 30 H 1.08995 * 109.47298 * 299.99624 * 1 2 3 31 31 H 1.08995 * 109.47207 * 60.00416 * 1 2 3 32 32 H 1.09007 * 109.46747 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47098 * 239.99640 * 2 1 3 34 34 H 1.09004 * 109.46683 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.46963 * 299.99733 * 3 2 1 36 36 H 1.09004 * 109.47036 * 60.00001 * 3 2 1 37 37 H 1.09004 * 109.47433 * 210.02564 * 9 8 7 38 38 H 1.09010 * 109.47042 * 330.02023 * 9 8 7 39 39 H 1.08999 * 109.58031 * 246.15688 * 13 12 10 40 40 H 1.09001 * 109.58528 * 6.43732 * 13 12 10 41 41 H 1.08994 * 109.49864 * 174.58710 * 14 13 12 42 42 H 1.09008 * 109.49591 * 294.65256 * 14 13 12 43 43 H 0.96994 * 119.99826 * 95.00474 * 17 15 14 44 44 H 0.97003 * 120.00380 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.49847 * 181.31645 * 26 15 14 46 46 H 1.08996 * 109.49556 * 301.38050 * 26 15 14 47 47 H 1.09010 * 109.46807 * 59.99612 * 29 27 12 48 48 H 1.08995 * 109.47856 * 179.97438 * 29 27 12 49 49 H 1.08996 * 109.47237 * 300.00169 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7978 -0.3780 2.4766 6 7 2.3995 -1.2280 3.2351 7 7 3.0113 -2.0943 2.5053 8 7 2.8092 -1.8090 1.2634 9 6 3.3279 -2.5428 0.1064 10 6 2.3456 -3.6145 -0.2904 11 8 1.3135 -3.7516 0.3318 12 7 2.6140 -4.4207 -1.3366 13 6 3.8602 -4.2673 -2.0995 14 6 4.5771 -5.6201 -2.1503 15 6 3.6233 -6.6777 -2.7105 16 1 3.2943 -6.3792 -3.7058 17 7 4.3161 -7.9660 -2.7912 18 6 5.0811 -8.2645 -3.8871 19 1 5.1739 -7.5500 -4.6916 20 6 5.7371 -9.4854 -3.9639 21 7 5.6243 -10.3559 -2.9832 22 14 6.7812 -9.8922 -5.4585 23 1 8.1760 -9.4387 -5.2262 24 1 6.7692 -11.3597 -5.6860 25 1 6.2283 -9.2018 -6.6513 26 6 2.4075 -6.8094 -1.7902 27 6 1.6689 -5.4740 -1.7316 28 1 0.8633 -5.5355 -0.9999 29 6 1.0894 -5.1524 -3.1106 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.4705 -1.8542 -0.7265 38 1 4.2819 -3.0022 0.3654 39 1 3.6300 -3.9375 -3.1126 40 1 4.4989 -3.5309 -1.6118 41 1 5.4536 -5.5435 -2.7935 42 1 4.8873 -5.9054 -1.1449 43 1 4.2329 -8.6076 -2.0685 44 1 6.0830 -11.2089 -3.0367 45 1 1.7400 -7.5793 -2.1772 46 1 2.7377 -7.0842 -0.7884 47 1 1.8973 -5.0981 -3.8405 48 1 0.3890 -5.9350 -3.4021 49 1 0.5697 -4.1952 -3.0721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044778570.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:07 Heat of formation + Delta-G solvation = 89.027933 kcal Electronic energy + Delta-G solvation = -30174.725939 eV Core-core repulsion = 26174.832680 eV Total energy + Delta-G solvation = -3999.893259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.36316 -40.64366 -38.07333 -36.50250 -35.59155 -34.77100 -32.93099 -31.99167 -31.62499 -29.77512 -28.96365 -27.63199 -27.46622 -24.67399 -24.46381 -23.74595 -23.22445 -22.07825 -21.13312 -20.58794 -18.75282 -18.21298 -17.66604 -17.17859 -16.66977 -16.23232 -15.74720 -15.55674 -15.05759 -14.96525 -14.24107 -14.17005 -13.87619 -13.67986 -13.64867 -13.61427 -13.30055 -13.02210 -12.96484 -12.64357 -12.61782 -12.33102 -12.04327 -12.02773 -11.87558 -11.76569 -11.58563 -11.56115 -11.40784 -11.16246 -11.09143 -10.98844 -10.91864 -10.63170 -10.30800 -10.25289 -10.01428 -9.85978 -9.76908 -9.02607 -8.84430 -7.10116 -5.87804 -3.18046 0.99993 1.57739 2.10587 2.12527 2.67394 3.34668 3.39763 3.42321 3.55804 3.82744 3.86842 4.09610 4.36159 4.47197 4.53460 4.65949 4.71356 4.82233 4.91540 5.04677 5.09373 5.18925 5.20860 5.25565 5.32278 5.33441 5.40758 5.44934 5.45634 5.51972 5.54269 5.62843 5.72715 5.76013 5.84007 5.85370 5.88963 5.99881 6.10174 6.17323 6.27554 6.33141 6.41003 6.70309 6.87005 7.09041 7.57315 7.71831 8.29875 8.46822 9.41355 9.97769 10.31857 11.34457 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.002477 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.573039 B =11302.641425 C =11514.501186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.144 4.144 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.083 5.083 8 N -0.293 5.293 9 C 0.092 3.908 10 C 0.503 3.497 11 O -0.527 6.527 12 N -0.590 5.590 13 C 0.100 3.900 14 C -0.154 4.154 15 C 0.180 3.820 16 H 0.053 0.947 17 N -0.723 5.723 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.135 4.135 27 C 0.143 3.857 28 H 0.096 0.904 29 C -0.160 4.160 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 21.944 0.372 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.078 4.078 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.069 5.069 8 N -0.093 5.093 9 C -0.034 4.034 10 C 0.287 3.713 11 O -0.404 6.404 12 N -0.323 5.323 13 C -0.023 4.023 14 C -0.195 4.195 15 C 0.069 3.931 16 H 0.070 0.930 17 N -0.363 5.363 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.174 4.174 27 C 0.040 3.960 28 H 0.114 0.886 29 C -0.218 4.218 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.549 21.639 1.968 23.003 hybrid contribution 0.918 -0.784 -1.546 1.961 sum -6.631 20.855 0.423 21.888 Atomic orbital electron populations 1.21825 0.91727 1.03267 1.03364 1.19786 0.97887 0.96005 0.89541 1.21855 1.01250 0.93390 1.03705 1.26062 0.94777 0.88934 0.97982 1.74934 1.19837 1.21889 0.98317 1.78606 1.06950 0.98853 1.22404 1.78924 1.20123 1.20613 0.87200 1.47905 1.34587 1.19965 1.06889 1.22103 0.99484 0.95703 0.86137 1.20162 0.87219 0.82903 0.81004 1.90798 1.26397 1.70664 1.52509 1.48215 1.21431 1.32883 1.29799 1.22009 0.84157 0.99753 0.96365 1.22726 1.00446 0.93617 1.02711 1.20176 0.89623 0.87296 0.95979 0.92959 1.42430 1.56928 1.14179 1.22806 1.19192 1.21620 0.99707 0.96955 0.91159 1.24761 1.01009 0.96862 0.98106 1.69653 1.47210 1.08612 1.32314 0.86217 0.80384 0.77437 0.82277 1.21686 1.21736 1.20733 1.22160 0.98609 0.95305 1.01355 1.21181 0.91411 0.86258 0.97107 0.88553 1.22149 1.01418 1.01754 0.96515 0.91053 0.90904 0.91875 0.89213 0.92349 0.90756 0.90916 0.84435 0.83818 0.90525 0.90798 0.90224 0.91950 0.78220 0.93378 0.90205 0.91742 0.91432 0.91034 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -0.79 9.18 37.16 0.34 -0.45 16 4 C 0.20 2.26 6.64 -155.43 -1.03 1.23 16 5 N -0.30 -4.25 12.36 32.70 0.40 -3.85 16 6 N -0.07 -1.19 13.43 60.35 0.81 -0.38 16 7 N -0.08 -1.24 13.29 60.35 0.80 -0.44 16 8 N -0.29 -3.45 2.83 -59.44 -0.17 -3.61 16 9 C 0.09 0.75 4.91 -5.20 -0.03 0.73 16 10 C 0.50 5.81 7.77 -10.99 -0.09 5.72 16 11 O -0.53 -8.32 15.84 5.55 0.09 -8.24 16 12 N -0.59 -6.38 2.68 -165.50 -0.44 -6.83 16 13 C 0.10 0.92 5.93 -3.71 -0.02 0.90 16 14 C -0.15 -2.13 5.66 -26.61 -0.15 -2.28 16 15 C 0.18 3.00 2.53 -67.89 -0.17 2.83 16 16 H 0.05 0.88 6.43 -51.93 -0.33 0.54 16 17 N -0.72 -16.47 5.12 -53.38 -0.27 -16.74 16 18 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 19 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 20 C -0.01 -0.30 5.50 -17.44 -0.10 -0.39 16 21 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 22 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.14 -1.99 4.99 -26.85 -0.13 -2.13 16 27 C 0.14 1.75 3.19 -67.84 -0.22 1.53 16 28 H 0.10 1.31 7.01 -51.93 -0.36 0.94 16 29 C -0.16 -1.67 9.02 37.16 0.34 -1.33 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.46 6.85 -51.93 -0.36 0.11 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.14 0.54 6.93 -51.93 -0.36 0.18 16 38 H 0.14 0.95 7.69 -51.92 -0.40 0.55 16 39 H 0.08 0.61 7.52 -51.93 -0.39 0.22 16 40 H 0.07 0.44 5.93 -51.93 -0.31 0.13 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 43 H 0.38 9.60 7.80 -40.82 -0.32 9.28 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.07 0.71 5.74 -51.92 -0.30 0.41 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -34.28 392.90 -6.27 -40.56 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.75 Total: 4.76 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.37 Total: -1.10 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 1.86 Total: -58.10 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.28 -6.27 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044778570.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.584 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds