Wall clock time and date at job start Tue Mar 31 2020 21:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46674 * 2 1 4 4 C 1.50707 * 109.47157 * 119.99534 * 2 1 3 5 5 N 1.31073 * 126.65801 * 299.98450 * 4 2 1 6 6 N 1.28839 * 107.98794 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39875 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80455 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43604 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47623 * 90.02147 * 9 8 7 11 11 O 1.21290 * 119.99651 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00233 * 180.02562 * 10 9 8 13 13 C 1.46927 * 120.63147 * 0.02562 * 12 10 9 14 14 C 1.53187 * 108.77767 * 126.37283 * 13 12 10 15 15 C 1.53039 * 109.31557 * 54.63148 * 14 13 12 16 16 H 1.08994 * 109.45833 * 58.63988 * 15 14 13 17 17 N 1.46501 * 109.45998 * 178.61930 * 15 14 13 18 18 C 1.36939 * 119.99753 * 274.99860 * 17 15 14 19 19 H 1.07997 * 119.99534 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99781 * 180.02562 * 18 17 15 21 21 N 1.31608 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99568 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47199 * 89.99968 * 22 20 18 24 24 H 1.48502 * 109.46717 * 209.99880 * 22 20 18 25 25 H 1.48498 * 109.47130 * 329.99833 * 22 20 18 26 26 C 1.53046 * 109.53781 * 298.63779 * 15 14 13 27 27 C 1.46926 * 120.62677 * 179.71956 * 12 10 9 28 28 H 1.08996 * 109.59534 * 353.42136 * 27 12 10 29 29 C 1.53003 * 109.58700 * 113.84334 * 27 12 10 30 30 H 1.08995 * 109.47298 * 299.99624 * 1 2 3 31 31 H 1.08995 * 109.47207 * 60.00416 * 1 2 3 32 32 H 1.09007 * 109.46747 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47098 * 239.99640 * 2 1 3 34 34 H 1.09004 * 109.46683 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.46963 * 299.99733 * 3 2 1 36 36 H 1.09004 * 109.47036 * 60.00001 * 3 2 1 37 37 H 1.09004 * 109.47433 * 210.02564 * 9 8 7 38 38 H 1.09010 * 109.47042 * 330.02023 * 9 8 7 39 39 H 1.08999 * 109.58031 * 246.15688 * 13 12 10 40 40 H 1.09001 * 109.58528 * 6.43732 * 13 12 10 41 41 H 1.08994 * 109.49864 * 174.58710 * 14 13 12 42 42 H 1.09008 * 109.49591 * 294.65256 * 14 13 12 43 43 H 0.96994 * 119.99826 * 95.00474 * 17 15 14 44 44 H 0.97003 * 120.00380 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.49847 * 181.31645 * 26 15 14 46 46 H 1.08996 * 109.49556 * 301.38050 * 26 15 14 47 47 H 1.09010 * 109.46807 * 59.99612 * 29 27 12 48 48 H 1.08995 * 109.47856 * 179.97438 * 29 27 12 49 49 H 1.08996 * 109.47237 * 300.00169 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7978 -0.3780 2.4766 6 7 2.3995 -1.2280 3.2351 7 7 3.0113 -2.0943 2.5053 8 7 2.8092 -1.8090 1.2634 9 6 3.3279 -2.5428 0.1064 10 6 2.3456 -3.6145 -0.2904 11 8 1.3135 -3.7516 0.3318 12 7 2.6140 -4.4207 -1.3366 13 6 3.8602 -4.2673 -2.0995 14 6 4.5771 -5.6201 -2.1503 15 6 3.6233 -6.6777 -2.7105 16 1 3.2943 -6.3792 -3.7058 17 7 4.3161 -7.9660 -2.7912 18 6 5.0811 -8.2645 -3.8871 19 1 5.1739 -7.5500 -4.6916 20 6 5.7371 -9.4854 -3.9639 21 7 5.6243 -10.3559 -2.9832 22 14 6.7812 -9.8922 -5.4585 23 1 8.1760 -9.4387 -5.2262 24 1 6.7692 -11.3597 -5.6860 25 1 6.2283 -9.2018 -6.6513 26 6 2.4075 -6.8094 -1.7902 27 6 1.6689 -5.4740 -1.7316 28 1 0.8633 -5.5355 -0.9999 29 6 1.0894 -5.1524 -3.1106 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.4705 -1.8542 -0.7265 38 1 4.2819 -3.0022 0.3654 39 1 3.6300 -3.9375 -3.1126 40 1 4.4989 -3.5309 -1.6118 41 1 5.4536 -5.5435 -2.7935 42 1 4.8873 -5.9054 -1.1449 43 1 4.2329 -8.6076 -2.0685 44 1 6.0830 -11.2089 -3.0367 45 1 1.7400 -7.5793 -2.1772 46 1 2.7377 -7.0842 -0.7884 47 1 1.8973 -5.0981 -3.8405 48 1 0.3890 -5.9350 -3.4021 49 1 0.5697 -4.1952 -3.0721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044778570.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:06 Heat of formation + Delta-G solvation = 65.116230 kcal Electronic energy + Delta-G solvation = -30175.762828 eV Core-core repulsion = 26174.832680 eV Total energy + Delta-G solvation = -4000.930148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.30613 -41.60821 -39.18876 -37.16240 -36.49023 -36.27224 -34.11104 -33.45030 -32.50460 -31.16477 -29.93729 -28.58101 -28.09736 -26.00556 -25.48128 -24.79179 -24.43855 -23.17258 -22.08796 -21.46237 -19.86914 -19.20947 -18.84508 -18.52945 -17.67751 -17.03446 -16.76178 -16.58002 -16.38146 -15.68332 -15.57608 -15.30668 -15.07343 -14.95734 -14.60280 -14.35735 -14.18540 -14.10037 -14.04192 -13.64103 -13.21827 -13.18482 -13.08116 -12.96905 -12.85307 -12.76081 -12.68522 -12.53695 -12.38025 -12.28984 -12.27463 -12.14874 -12.07226 -11.97554 -11.88758 -11.69728 -11.20777 -11.09912 -10.96046 -10.81168 -9.81121 -8.98969 -7.91496 -5.20000 0.08768 0.81175 1.12740 1.25797 1.50047 1.50787 1.59016 1.81276 2.58334 2.87681 3.07270 3.13482 3.42731 3.56626 3.74673 3.79004 3.86763 3.99639 4.03014 4.06417 4.09567 4.18143 4.23486 4.35443 4.38316 4.53592 4.58701 4.62666 4.63350 4.77240 4.79257 4.83130 4.85120 4.92149 4.94800 5.01336 5.07237 5.08929 5.13967 5.26309 5.29744 5.35140 5.37528 5.51503 5.55680 5.64737 6.20927 6.30182 6.83944 7.36056 7.47892 8.12867 8.34211 9.32383 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.002477 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.573039 B =11302.641425 C =11514.501186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.011 4.011 3 C -0.140 4.140 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.108 5.108 8 N -0.291 5.291 9 C 0.085 3.915 10 C 0.504 3.496 11 O -0.576 6.576 12 N -0.586 5.586 13 C 0.105 3.895 14 C -0.147 4.147 15 C 0.174 3.826 16 H 0.060 0.940 17 N -0.740 5.740 18 C -0.229 4.229 19 H 0.084 0.916 20 C -0.081 4.081 21 N -0.974 5.974 22 Si 0.968 3.032 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.265 1.265 26 C -0.126 4.126 27 C 0.149 3.851 28 H 0.080 0.920 29 C -0.152 4.152 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.038 0.962 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.195 0.805 38 H 0.165 0.835 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.367 0.633 44 H 0.248 0.752 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 25.226 -2.527 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.198 4.198 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.094 5.094 8 N -0.092 5.092 9 C -0.038 4.038 10 C 0.290 3.710 11 O -0.455 6.455 12 N -0.318 5.318 13 C -0.017 4.017 14 C -0.188 4.188 15 C 0.066 3.934 16 H 0.078 0.922 17 N -0.379 5.379 18 C -0.360 4.360 19 H 0.102 0.898 20 C -0.273 4.273 21 N -0.626 5.626 22 Si 0.798 3.202 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.189 1.189 26 C -0.165 4.165 27 C 0.046 3.954 28 H 0.098 0.902 29 C -0.210 4.210 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.212 0.788 38 H 0.183 0.817 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.198 0.802 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.015 24.990 -0.966 25.974 hybrid contribution 0.656 -1.776 -0.656 2.004 sum -6.359 23.214 -1.622 24.123 Atomic orbital electron populations 1.21818 0.92067 1.01899 1.04171 1.20148 0.97501 0.97002 0.88617 1.21858 1.01655 0.92038 1.04216 1.26854 0.93240 0.88351 0.98373 1.74850 1.20680 1.22451 0.99793 1.78564 1.08090 0.99769 1.23659 1.78822 1.20856 1.20971 0.88753 1.48122 1.34353 1.20068 1.06659 1.22600 0.98612 0.95943 0.86662 1.20679 0.87055 0.83217 0.80050 1.90796 1.28765 1.72118 1.53861 1.48216 1.21598 1.32163 1.29820 1.22167 0.83388 0.97669 0.98429 1.22499 0.99773 0.95374 1.01116 1.20466 0.90317 0.85621 0.97005 0.92167 1.42713 1.57262 1.16250 1.21684 1.19638 1.19792 0.99227 0.97383 0.89783 1.25546 1.03435 0.97419 1.00858 1.69824 1.49238 1.08924 1.34584 0.85205 0.78800 0.76330 0.79845 1.21609 1.23123 1.18926 1.22021 0.97989 0.96966 0.99547 1.20973 0.90971 0.85346 0.98121 0.90207 1.22080 1.01550 1.02559 0.94820 0.92550 0.87857 0.94233 0.85938 0.91675 0.88018 0.92663 0.78825 0.81714 0.87738 0.86210 0.90805 0.93768 0.80164 0.94351 0.91345 0.93878 0.90903 0.91166 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 2 C -0.01 -0.12 3.26 -11.54 -0.04 -0.16 16 3 C -0.14 -1.02 9.18 71.98 0.66 -0.35 16 4 C 0.21 4.33 6.64 138.14 0.92 5.25 16 5 N -0.33 -9.27 12.36 -50.45 -0.62 -9.89 16 6 N -0.11 -3.47 13.43 37.01 0.50 -2.98 16 7 N -0.11 -3.19 13.29 37.02 0.49 -2.70 16 8 N -0.29 -6.23 2.83 -341.96 -0.97 -7.20 16 9 C 0.09 1.04 4.91 85.63 0.42 1.46 16 10 C 0.50 10.20 7.77 87.66 0.68 10.89 16 11 O -0.58 -17.66 15.84 -3.06 -0.05 -17.71 16 12 N -0.59 -10.81 2.68 -795.91 -2.14 -12.94 16 13 C 0.11 1.42 5.93 86.36 0.51 1.93 16 14 C -0.15 -3.71 5.66 30.67 0.17 -3.54 16 15 C 0.17 5.61 2.53 45.02 0.11 5.72 16 16 H 0.06 1.87 6.43 -2.39 -0.02 1.85 16 17 N -0.74 -33.92 5.12 -322.81 -1.65 -35.57 16 18 C -0.23 -11.55 9.93 84.03 0.83 -10.72 16 19 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 22 Si 0.97 43.74 29.55 68.60 2.03 45.77 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 26 C -0.13 -3.72 4.99 30.52 0.15 -3.57 16 27 C 0.15 3.43 3.19 44.82 0.14 3.58 16 28 H 0.08 2.15 7.01 -2.39 -0.02 2.14 16 29 C -0.15 -2.73 9.02 71.98 0.65 -2.08 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.12 0.54 6.85 -2.39 -0.02 0.52 16 34 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.19 0.12 6.93 -2.39 -0.02 0.10 16 38 H 0.17 1.41 7.69 -2.38 -0.02 1.39 16 39 H 0.10 0.98 7.52 -2.39 -0.02 0.97 16 40 H 0.12 0.61 5.93 -2.39 -0.01 0.60 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.37 19.01 7.80 -92.71 -0.72 18.29 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.24 5.74 -2.38 -0.01 1.23 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -81.07 392.90 4.46 -76.61 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.24 Total: 21.10 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 6.35 Total: 3.38 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -4.11 Total: -129.16 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.05 Total: -17.71 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -81.07 4.46 -76.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044778570.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.727 kcal (2) G-P(sol) polarization free energy of solvation -81.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds