Wall clock time and date at job start Tue Mar 31 2020 21:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 C 1.50699 * 109.47558 * 119.99848 * 2 1 3 5 5 N 1.31077 * 126.66073 * 300.04894 * 4 2 1 6 6 N 1.28842 * 107.98656 * 179.97438 * 5 4 2 7 7 N 1.28736 * 109.39983 * 359.73249 * 6 5 4 8 8 N 1.29024 * 108.80758 * 0.43562 * 7 6 5 9 9 C 1.46502 * 126.43408 * 179.83514 * 8 7 6 10 10 C 1.50701 * 109.47172 * 269.69047 * 9 8 7 11 11 O 1.21281 * 119.99724 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00255 * 179.97438 * 10 9 8 13 13 C 1.46931 * 120.63061 * 354.94070 * 12 10 9 14 14 C 1.53190 * 108.77437 * 233.58357 * 13 12 10 15 15 C 1.53036 * 109.31345 * 305.36548 * 14 13 12 16 16 H 1.09000 * 109.45924 * 301.35760 * 15 14 13 17 17 N 1.46504 * 109.46091 * 181.38957 * 15 14 13 18 18 C 1.36934 * 120.00328 * 84.96512 * 17 15 14 19 19 H 1.08004 * 119.99765 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00083 * 179.97438 * 18 17 15 21 21 N 1.31612 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47187 * 60.00385 * 22 20 18 24 24 H 1.48497 * 109.47153 * 300.00224 * 22 20 18 25 25 H 1.48498 * 109.46963 * 180.02562 * 22 20 18 26 26 C 1.53040 * 109.52792 * 61.37203 * 15 14 13 27 27 C 1.46930 * 120.63240 * 174.91373 * 12 10 9 28 28 H 1.08994 * 109.58826 * 246.20569 * 27 12 10 29 29 C 1.52998 * 109.58361 * 6.48791 * 27 12 10 30 30 H 1.09000 * 109.46894 * 300.00092 * 1 2 3 31 31 H 1.08997 * 109.47072 * 59.99446 * 1 2 3 32 32 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47456 * 240.00399 * 2 1 3 34 34 H 1.09000 * 109.47292 * 60.00151 * 3 2 1 35 35 H 1.09005 * 109.47939 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47580 * 300.00243 * 3 2 1 37 37 H 1.08996 * 109.46853 * 149.69215 * 9 8 7 38 38 H 1.08998 * 109.47274 * 29.69240 * 9 8 7 39 39 H 1.08996 * 109.58767 * 113.79442 * 13 12 10 40 40 H 1.09003 * 109.69958 * 353.44055 * 13 12 10 41 41 H 1.08998 * 109.49711 * 185.40927 * 14 13 12 42 42 H 1.09002 * 109.52339 * 65.33365 * 14 13 12 43 43 H 0.97006 * 119.99199 * 264.97161 * 17 15 14 44 44 H 0.97003 * 120.00296 * 359.97438 * 21 20 18 45 45 H 1.08996 * 109.49929 * 58.58450 * 26 15 14 46 46 H 1.09004 * 109.49814 * 178.67739 * 26 15 14 47 47 H 1.09000 * 109.47298 * 55.78714 * 29 27 12 48 48 H 1.09002 * 109.46967 * 175.78526 * 29 27 12 49 49 H 1.09004 * 109.47217 * 295.78553 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7970 -0.3788 2.4765 6 7 2.3982 -1.2293 3.2349 7 7 3.0064 -2.0980 2.5050 8 7 2.8095 -1.8088 1.2631 9 6 3.3290 -2.5420 0.1061 10 6 4.6670 -1.9728 -0.2899 11 8 5.1402 -1.0462 0.3333 12 7 5.3382 -2.4940 -1.3359 13 6 4.8329 -3.6860 -2.0308 14 6 5.9429 -4.7409 -2.0711 15 6 7.1978 -4.1314 -2.7001 16 1 6.9656 -3.7788 -3.7051 17 7 8.2511 -5.1472 -2.7706 18 6 8.2983 -6.0123 -3.8310 19 1 7.5592 -5.9455 -4.6157 20 6 9.2966 -6.9745 -3.8980 21 7 10.1976 -7.0555 -2.9420 22 14 9.3613 -8.1541 -5.3449 23 1 9.5202 -7.3841 -6.6047 24 1 8.1021 -8.9393 -5.4002 25 1 10.5128 -9.0772 -5.1799 26 6 7.6791 -2.9562 -1.8460 27 6 6.5889 -1.8809 -1.8035 28 1 6.4428 -1.4686 -2.8019 29 6 7.0030 -0.7642 -0.8431 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 2.6327 -2.4467 -0.7270 38 1 3.4441 -3.5946 0.3648 39 1 4.5436 -3.4209 -3.0477 40 1 3.9697 -4.0840 -1.4973 41 1 5.6141 -5.5924 -2.6668 42 1 6.1682 -5.0716 -1.0571 43 1 8.9151 -5.2070 -2.0659 44 1 10.1642 -6.4427 -2.1908 45 1 7.8877 -3.3034 -0.8341 46 1 8.5862 -2.5373 -2.2817 47 1 7.0807 -1.1646 0.1677 48 1 7.9682 -0.3609 -1.1494 49 1 6.2550 0.0285 -0.8634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044778573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:12 Heat of formation + Delta-G solvation = 104.135761 kcal Electronic energy + Delta-G solvation = -30287.479835 eV Core-core repulsion = 26288.241701 eV Total energy + Delta-G solvation = -3999.238134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.39020 -40.84817 -37.89978 -36.54135 -35.70862 -34.96853 -33.15322 -32.26705 -31.64528 -29.69314 -28.78411 -27.65803 -27.14191 -24.69323 -24.40851 -23.74286 -23.22437 -22.11086 -21.03453 -20.53500 -19.51326 -18.07637 -17.60935 -17.40614 -16.50181 -16.27058 -16.13711 -15.59344 -15.06963 -14.92662 -14.40428 -14.19817 -14.06729 -13.71113 -13.68896 -13.61160 -13.43276 -13.20751 -12.85806 -12.64233 -12.46783 -12.34456 -12.29480 -12.05547 -11.88905 -11.79413 -11.65519 -11.60640 -11.40108 -11.18773 -11.06041 -10.96127 -10.70905 -10.60563 -10.26754 -10.21185 -10.06973 -9.41887 -9.27449 -9.03868 -8.78813 -7.17874 -6.20556 -3.22336 0.97450 1.54843 2.06979 2.09373 2.63226 3.43759 3.46702 3.53238 3.64826 3.80235 3.83278 4.07175 4.32377 4.50910 4.54943 4.63196 4.65701 4.79629 4.88818 4.96189 5.04412 5.16358 5.18339 5.20327 5.27715 5.30331 5.38085 5.42994 5.47772 5.50479 5.52382 5.64212 5.73562 5.76713 5.81047 5.85274 5.87547 5.95912 6.06654 6.15980 6.20227 6.25496 6.48569 6.62411 6.78521 7.05873 7.67811 7.71234 8.44209 8.64465 9.09974 9.96568 10.10982 11.27347 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.002462 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.317404 B =11370.280387 C =11445.702967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.084 5.084 8 N -0.292 5.292 9 C 0.088 3.912 10 C 0.502 3.498 11 O -0.516 6.516 12 N -0.593 5.593 13 C 0.102 3.898 14 C -0.153 4.153 15 C 0.185 3.815 16 H 0.050 0.950 17 N -0.735 5.735 18 C -0.336 4.336 19 H 0.065 0.935 20 C -0.043 4.043 21 N -0.941 5.941 22 Si 1.079 2.921 23 H -0.295 1.295 24 H -0.295 1.295 25 H -0.285 1.285 26 C -0.137 4.137 27 C 0.150 3.850 28 H 0.077 0.923 29 C -0.136 4.136 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.367 0.633 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.047 0.953 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.408 13.882 0.787 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.069 5.069 8 N -0.093 5.093 9 C -0.038 4.038 10 C 0.286 3.714 11 O -0.393 6.393 12 N -0.327 5.327 13 C -0.021 4.021 14 C -0.194 4.194 15 C 0.074 3.926 16 H 0.068 0.932 17 N -0.376 5.376 18 C -0.466 4.466 19 H 0.083 0.917 20 C -0.241 4.241 21 N -0.586 5.586 22 Si 0.909 3.091 23 H -0.222 1.222 24 H -0.222 1.222 25 H -0.210 1.210 26 C -0.177 4.177 27 C 0.048 3.952 28 H 0.095 0.905 29 C -0.193 4.193 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.066 0.934 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.305 12.901 1.692 22.458 hybrid contribution -0.558 0.870 -0.159 1.046 sum -18.863 13.771 1.532 23.405 Atomic orbital electron populations 1.21853 0.91924 1.02717 1.03717 1.19782 0.97317 0.96568 0.89541 1.21823 1.01950 0.93017 1.03372 1.26056 0.94915 0.88799 0.97965 1.74941 1.20669 1.21036 0.98324 1.78608 1.06924 0.98870 1.22404 1.78923 1.19017 1.21780 0.87205 1.47896 1.33742 1.20783 1.06871 1.22163 0.96684 0.98766 0.86164 1.20180 0.86017 0.84079 0.81095 1.90873 1.67281 1.28892 1.52222 1.48182 1.24348 1.29217 1.30939 1.21998 0.97545 0.85197 0.97353 1.22694 0.96496 0.97703 1.02481 1.20082 0.88305 0.88160 0.96005 0.93193 1.42436 1.31344 1.37381 1.26445 1.19998 1.13449 1.12295 1.00896 0.91720 1.25785 0.94303 1.00010 1.03990 1.70884 1.36319 1.40131 1.11228 0.83258 0.75827 0.75847 0.74120 1.22213 1.22233 1.20997 1.22336 0.97776 0.96087 1.01452 1.21392 0.82262 0.93610 0.97977 0.90542 1.22209 1.00151 0.97465 0.99511 0.90913 0.90750 0.92362 0.89231 0.91050 0.91886 0.90921 0.84511 0.84033 0.90524 0.90636 0.90146 0.92093 0.79960 0.93304 0.91755 0.90428 0.91103 0.93428 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.18 37.16 0.34 -0.43 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -1.02 9.17 37.16 0.34 -0.68 16 4 C 0.20 2.20 6.64 -155.43 -1.03 1.17 16 5 N -0.30 -4.18 12.36 32.70 0.40 -3.78 16 6 N -0.07 -1.17 13.43 60.35 0.81 -0.36 16 7 N -0.08 -1.23 13.29 60.35 0.80 -0.43 16 8 N -0.29 -3.34 2.83 -59.44 -0.17 -3.51 16 9 C 0.09 0.70 4.97 -5.19 -0.03 0.68 16 10 C 0.50 5.55 7.67 -10.99 -0.08 5.47 16 11 O -0.52 -7.51 11.83 5.56 0.07 -7.44 16 12 N -0.59 -6.34 2.97 -165.22 -0.49 -6.83 16 13 C 0.10 0.95 6.32 -3.71 -0.02 0.93 16 14 C -0.15 -2.17 5.66 -26.61 -0.15 -2.32 16 15 C 0.18 3.18 2.73 -67.89 -0.19 3.00 16 16 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 17 N -0.73 -16.94 5.12 -53.38 -0.27 -17.22 16 18 C -0.34 -8.79 9.93 -15.06 -0.15 -8.94 16 19 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 20 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 21 N -0.94 -28.20 13.70 55.49 0.76 -27.44 16 22 Si 1.08 24.74 29.92 -169.99 -5.09 19.65 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.14 -2.05 4.84 -26.61 -0.13 -2.17 16 27 C 0.15 1.83 3.49 -67.60 -0.24 1.59 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 C -0.14 -1.74 7.60 37.16 0.28 -1.46 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.44 6.85 -51.93 -0.36 0.09 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.14 0.52 7.10 -51.93 -0.37 0.15 16 38 H 0.14 0.92 7.48 -51.93 -0.39 0.53 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.46 5.97 -51.93 -0.31 0.15 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.37 8.98 6.63 -40.82 -0.27 8.71 16 44 H 0.26 7.55 6.77 -40.82 -0.28 7.28 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.07 1.06 6.73 -51.93 -0.35 0.72 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.88 6.77 -51.93 -0.35 0.53 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -34.84 389.79 -6.54 -41.38 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.79 Total: 4.93 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.45 Total: -4.83 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 1.84 Total: -59.56 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.07 Total: -7.44 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.65 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.84 -6.54 -41.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044778573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.513 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds