Wall clock time and date at job start Tue Mar 31 2020 21:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 C 1.50699 * 109.47558 * 119.99848 * 2 1 3 5 5 N 1.31077 * 126.66073 * 300.04894 * 4 2 1 6 6 N 1.28842 * 107.98656 * 179.97438 * 5 4 2 7 7 N 1.28736 * 109.39983 * 359.73249 * 6 5 4 8 8 N 1.29024 * 108.80758 * 0.43562 * 7 6 5 9 9 C 1.46502 * 126.43408 * 179.83514 * 8 7 6 10 10 C 1.50701 * 109.47172 * 269.69047 * 9 8 7 11 11 O 1.21281 * 119.99724 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00255 * 179.97438 * 10 9 8 13 13 C 1.46931 * 120.63061 * 354.94070 * 12 10 9 14 14 C 1.53190 * 108.77437 * 233.58357 * 13 12 10 15 15 C 1.53036 * 109.31345 * 305.36548 * 14 13 12 16 16 H 1.09000 * 109.45924 * 301.35760 * 15 14 13 17 17 N 1.46504 * 109.46091 * 181.38957 * 15 14 13 18 18 C 1.36934 * 120.00328 * 84.96512 * 17 15 14 19 19 H 1.08004 * 119.99765 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00083 * 179.97438 * 18 17 15 21 21 N 1.31612 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47187 * 60.00385 * 22 20 18 24 24 H 1.48497 * 109.47153 * 300.00224 * 22 20 18 25 25 H 1.48498 * 109.46963 * 180.02562 * 22 20 18 26 26 C 1.53040 * 109.52792 * 61.37203 * 15 14 13 27 27 C 1.46930 * 120.63240 * 174.91373 * 12 10 9 28 28 H 1.08994 * 109.58826 * 246.20569 * 27 12 10 29 29 C 1.52998 * 109.58361 * 6.48791 * 27 12 10 30 30 H 1.09000 * 109.46894 * 300.00092 * 1 2 3 31 31 H 1.08997 * 109.47072 * 59.99446 * 1 2 3 32 32 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47456 * 240.00399 * 2 1 3 34 34 H 1.09000 * 109.47292 * 60.00151 * 3 2 1 35 35 H 1.09005 * 109.47939 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47580 * 300.00243 * 3 2 1 37 37 H 1.08996 * 109.46853 * 149.69215 * 9 8 7 38 38 H 1.08998 * 109.47274 * 29.69240 * 9 8 7 39 39 H 1.08996 * 109.58767 * 113.79442 * 13 12 10 40 40 H 1.09003 * 109.69958 * 353.44055 * 13 12 10 41 41 H 1.08998 * 109.49711 * 185.40927 * 14 13 12 42 42 H 1.09002 * 109.52339 * 65.33365 * 14 13 12 43 43 H 0.97006 * 119.99199 * 264.97161 * 17 15 14 44 44 H 0.97003 * 120.00296 * 359.97438 * 21 20 18 45 45 H 1.08996 * 109.49929 * 58.58450 * 26 15 14 46 46 H 1.09004 * 109.49814 * 178.67739 * 26 15 14 47 47 H 1.09000 * 109.47298 * 55.78714 * 29 27 12 48 48 H 1.09002 * 109.46967 * 175.78526 * 29 27 12 49 49 H 1.09004 * 109.47217 * 295.78553 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7970 -0.3788 2.4765 6 7 2.3982 -1.2293 3.2349 7 7 3.0064 -2.0980 2.5050 8 7 2.8095 -1.8088 1.2631 9 6 3.3290 -2.5420 0.1061 10 6 4.6670 -1.9728 -0.2899 11 8 5.1402 -1.0462 0.3333 12 7 5.3382 -2.4940 -1.3359 13 6 4.8329 -3.6860 -2.0308 14 6 5.9429 -4.7409 -2.0711 15 6 7.1978 -4.1314 -2.7001 16 1 6.9656 -3.7788 -3.7051 17 7 8.2511 -5.1472 -2.7706 18 6 8.2983 -6.0123 -3.8310 19 1 7.5592 -5.9455 -4.6157 20 6 9.2966 -6.9745 -3.8980 21 7 10.1976 -7.0555 -2.9420 22 14 9.3613 -8.1541 -5.3449 23 1 9.5202 -7.3841 -6.6047 24 1 8.1021 -8.9393 -5.4002 25 1 10.5128 -9.0772 -5.1799 26 6 7.6791 -2.9562 -1.8460 27 6 6.5889 -1.8809 -1.8035 28 1 6.4428 -1.4686 -2.8019 29 6 7.0030 -0.7642 -0.8431 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 2.6327 -2.4467 -0.7270 38 1 3.4441 -3.5946 0.3648 39 1 4.5436 -3.4209 -3.0477 40 1 3.9697 -4.0840 -1.4973 41 1 5.6141 -5.5924 -2.6668 42 1 6.1682 -5.0716 -1.0571 43 1 8.9151 -5.2070 -2.0659 44 1 10.1642 -6.4427 -2.1908 45 1 7.8877 -3.3034 -0.8341 46 1 8.5862 -2.5373 -2.2817 47 1 7.0807 -1.1646 0.1677 48 1 7.9682 -0.3609 -1.1494 49 1 6.2550 0.0285 -0.8634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044778573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:11 Heat of formation + Delta-G solvation = 79.942933 kcal Electronic energy + Delta-G solvation = -30288.528915 eV Core-core repulsion = 26288.241701 eV Total energy + Delta-G solvation = -4000.287214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.31370 -41.78957 -39.04815 -37.20372 -36.63436 -36.42939 -34.25982 -33.78223 -32.51074 -31.02368 -29.87776 -28.32042 -28.11166 -25.90861 -25.48969 -24.85345 -24.56449 -23.10585 -21.93088 -21.59744 -20.50787 -19.35118 -18.86564 -18.47436 -17.43481 -17.15384 -17.04521 -16.70126 -16.28505 -15.94808 -15.59181 -15.39805 -15.20356 -14.95457 -14.71862 -14.57318 -14.20287 -14.17437 -13.77338 -13.52594 -13.40922 -13.28966 -13.17351 -13.09058 -12.82192 -12.69594 -12.61571 -12.44365 -12.35221 -12.30050 -12.28159 -12.12738 -11.98088 -11.89645 -11.88305 -11.63424 -11.19419 -11.11063 -10.88227 -10.32465 -9.76564 -9.11858 -8.36070 -5.31146 0.08295 0.80145 1.11897 1.25509 1.60063 1.69642 1.78812 1.85231 2.73196 2.86721 3.05585 3.12606 3.42388 3.54705 3.59250 3.71948 3.80353 3.93999 3.98642 4.01750 4.05283 4.14209 4.17461 4.24502 4.36269 4.48744 4.51655 4.57579 4.62275 4.67506 4.72161 4.77875 4.83725 4.90155 4.90992 4.93401 4.97589 5.03684 5.10403 5.18083 5.28784 5.33062 5.35832 5.44007 5.56884 5.63372 6.19919 6.50263 6.86100 7.10409 7.47274 7.99809 8.14006 9.15556 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.002462 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.317404 B =11370.280387 C =11445.702967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.141 4.141 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.108 5.108 7 N -0.108 5.108 8 N -0.290 5.290 9 C 0.083 3.917 10 C 0.502 3.498 11 O -0.556 6.556 12 N -0.591 5.591 13 C 0.109 3.891 14 C -0.145 4.145 15 C 0.177 3.823 16 H 0.053 0.947 17 N -0.753 5.753 18 C -0.321 4.321 19 H 0.075 0.925 20 C -0.110 4.110 21 N -0.982 5.982 22 Si 1.125 2.875 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.301 1.301 26 C -0.127 4.127 27 C 0.158 3.842 28 H 0.099 0.901 29 C -0.124 4.124 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.102 0.898 37 H 0.193 0.807 38 H 0.162 0.838 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.354 0.646 44 H 0.242 0.758 45 H 0.043 0.957 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.051 0.949 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.635 14.305 -2.072 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 C -0.199 4.199 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.094 5.094 8 N -0.091 5.091 9 C -0.041 4.041 10 C 0.288 3.712 11 O -0.435 6.435 12 N -0.324 5.324 13 C -0.013 4.013 14 C -0.186 4.186 15 C 0.069 3.931 16 H 0.071 0.929 17 N -0.393 5.393 18 C -0.452 4.452 19 H 0.093 0.907 20 C -0.301 4.301 21 N -0.630 5.630 22 Si 0.951 3.049 23 H -0.203 1.203 24 H -0.200 1.200 25 H -0.227 1.227 26 C -0.166 4.166 27 C 0.055 3.945 28 H 0.117 0.883 29 C -0.181 4.181 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.120 0.880 37 H 0.210 0.790 38 H 0.180 0.820 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.185 0.815 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.603 13.354 -1.182 25.425 hybrid contribution 0.443 0.839 0.717 1.189 sum -21.159 14.193 -0.465 25.483 Atomic orbital electron populations 1.21855 0.90451 1.03302 1.04197 1.20133 0.98388 0.96062 0.88638 1.21814 1.00487 0.93523 1.04105 1.26826 0.93487 0.88128 0.98315 1.74857 1.21597 1.21528 0.99814 1.78567 1.08099 0.99797 1.23672 1.78823 1.19555 1.22270 0.88750 1.48109 1.33338 1.21013 1.06633 1.22628 0.95852 0.99000 0.86634 1.20647 0.86901 0.83467 0.80176 1.90881 1.68531 1.30847 1.53221 1.48168 1.23684 1.29474 1.31033 1.22122 0.96500 0.82938 0.99719 1.22462 0.96612 0.98868 1.00613 1.20393 0.88174 0.87600 0.96910 0.92854 1.42733 1.32792 1.38336 1.25475 1.20374 1.12296 1.11434 1.01141 0.90738 1.27151 0.94632 1.02471 1.05819 1.70999 1.38466 1.41269 1.12289 0.82655 0.75959 0.74201 0.72134 1.20275 1.20018 1.22716 1.22188 0.98656 0.96179 0.99582 1.21253 0.82121 0.92200 0.98955 0.88274 1.22044 1.00462 0.97559 0.98059 0.92666 0.88069 0.91735 0.85983 0.92586 0.94060 0.87980 0.79041 0.82025 0.87641 0.86231 0.91134 0.93996 0.81467 0.94768 0.93792 0.91549 0.93891 0.93053 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 71.98 0.66 -0.34 16 2 C -0.01 -0.11 3.26 -11.54 -0.04 -0.15 16 3 C -0.14 -1.68 9.17 71.98 0.66 -1.02 16 4 C 0.21 4.22 6.64 138.13 0.92 5.14 16 5 N -0.33 -9.11 12.36 -50.45 -0.62 -9.73 16 6 N -0.11 -3.44 13.43 37.01 0.50 -2.94 16 7 N -0.11 -3.11 13.29 37.02 0.49 -2.62 16 8 N -0.29 -5.99 2.83 -341.98 -0.97 -6.96 16 9 C 0.08 0.95 4.97 85.63 0.43 1.38 16 10 C 0.50 9.58 7.67 87.66 0.67 10.25 16 11 O -0.56 -15.52 11.83 -3.03 -0.04 -15.56 16 12 N -0.59 -10.59 2.97 -795.03 -2.36 -12.95 16 13 C 0.11 1.49 6.32 86.36 0.55 2.04 16 14 C -0.14 -3.79 5.66 30.67 0.17 -3.62 16 15 C 0.18 5.91 2.73 45.02 0.12 6.03 16 16 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 17 N -0.75 -35.08 5.12 -322.81 -1.65 -36.73 16 18 C -0.32 -16.71 9.93 84.03 0.83 -15.88 16 19 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 20 C -0.11 -6.14 5.50 84.86 0.47 -5.67 16 21 N -0.98 -60.55 13.70 21.65 0.30 -60.25 16 22 Si 1.13 49.59 29.92 68.60 2.05 51.64 16 23 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 C -0.13 -3.74 4.84 30.67 0.15 -3.59 16 27 C 0.16 3.51 3.49 44.97 0.16 3.67 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 C -0.12 -3.09 7.60 71.98 0.55 -2.54 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.12 0.50 6.85 -2.39 -0.02 0.48 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.19 0.07 7.10 -2.39 -0.02 0.05 16 38 H 0.16 1.31 7.48 -2.39 -0.02 1.29 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.12 0.68 5.97 -2.39 -0.01 0.66 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.35 18.06 6.63 -92.70 -0.61 17.45 16 44 H 0.24 14.96 6.77 -92.71 -0.63 14.33 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.04 1.31 6.73 -2.39 -0.02 1.29 16 48 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.07 1.70 6.77 -2.39 -0.02 1.69 16 Total: -1.00 -82.37 389.79 4.47 -77.90 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.49 Total: 22.51 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 6.29 Total: -4.31 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -4.32 Total: -132.18 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.04 Total: -15.56 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -82.37 4.47 -77.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044778573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.843 kcal (2) G-P(sol) polarization free energy of solvation -82.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds