Wall clock time and date at job start Tue Mar 31 2020 21:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 C 1.50700 * 109.47407 * 119.99936 * 2 1 3 5 5 N 1.31072 * 126.66016 * 299.68993 * 4 2 1 6 6 N 1.28843 * 107.98855 * 179.89385 * 5 4 2 7 7 N 1.28733 * 109.39787 * 0.37451 * 6 5 4 8 8 N 1.29020 * 108.81213 * 359.76663 * 7 6 5 9 9 C 1.46494 * 126.44015 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47481 * 269.97612 * 9 8 7 11 11 O 1.21281 * 119.99519 * 0.02562 * 10 9 8 12 12 N 1.34767 * 120.00239 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63278 * 354.20036 * 12 10 9 14 14 C 1.53197 * 108.77772 * 126.36686 * 13 12 10 15 15 C 1.53045 * 109.30879 * 54.63619 * 14 13 12 16 16 H 1.08997 * 109.45998 * 58.64266 * 15 14 13 17 17 N 1.46503 * 109.45672 * 178.61811 * 15 14 13 18 18 C 1.36942 * 119.99607 * 275.00131 * 17 15 14 19 19 H 1.08001 * 120.00249 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99873 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00099 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47483 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47071 * 119.99787 * 22 20 18 25 25 H 1.48499 * 109.47281 * 239.99406 * 22 20 18 26 26 C 1.53042 * 109.53835 * 298.63594 * 15 14 13 27 27 C 1.46925 * 120.63077 * 173.92074 * 12 10 9 28 28 H 1.09001 * 109.59094 * 113.84563 * 27 12 10 29 29 C 1.53001 * 109.58897 * 353.42182 * 27 12 10 30 30 H 1.09002 * 109.47788 * 59.99946 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99727 * 1 2 3 32 32 H 1.09009 * 109.47183 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47182 * 239.99824 * 2 1 3 34 34 H 1.09002 * 109.46963 * 299.99912 * 3 2 1 35 35 H 1.09001 * 109.47177 * 59.99821 * 3 2 1 36 36 H 1.08997 * 109.47281 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.47039 * 29.97704 * 9 8 7 38 38 H 1.08997 * 109.47317 * 149.97681 * 9 8 7 39 39 H 1.08995 * 109.59053 * 246.15502 * 13 12 10 40 40 H 1.08998 * 109.58776 * 6.57995 * 13 12 10 41 41 H 1.08997 * 109.49647 * 174.59116 * 14 13 12 42 42 H 1.09000 * 109.49521 * 294.69022 * 14 13 12 43 43 H 0.96991 * 120.00247 * 94.99837 * 17 15 14 44 44 H 0.97004 * 120.00471 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.49441 * 181.32198 * 26 15 14 46 46 H 1.09007 * 109.49451 * 301.38177 * 26 15 14 47 47 H 1.08997 * 109.46892 * 65.79659 * 29 27 12 48 48 H 1.09000 * 109.47611 * 185.80684 * 29 27 12 49 49 H 1.09007 * 109.46941 * 305.80254 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.8022 -0.3750 2.4765 6 7 2.3999 -1.2280 3.2350 7 7 3.0118 -2.0941 2.5051 8 7 2.8092 -1.8091 1.2632 9 6 3.3269 -2.5435 0.1062 10 6 4.6646 -1.9752 -0.2921 11 8 5.1390 -1.0482 0.3297 12 7 5.3342 -2.4976 -1.3385 13 6 4.8361 -3.6993 -2.0214 14 6 4.7207 -3.4028 -3.5200 15 6 6.0678 -2.8967 -4.0409 16 1 6.8346 -3.6489 -3.8555 17 7 5.9704 -2.6435 -5.4806 18 6 6.1593 -3.6673 -6.3702 19 1 6.3806 -4.6613 -6.0105 20 6 6.0675 -3.4272 -7.7343 21 7 5.7983 -2.2157 -8.1727 22 14 6.3259 -4.8236 -8.9478 23 1 6.6138 -6.0773 -8.2059 24 1 5.0992 -5.0022 -9.7654 25 1 7.4707 -4.5011 -9.8370 26 6 6.4412 -1.5998 -3.3192 27 6 6.5730 -1.8727 -1.8220 28 1 7.4132 -2.5450 -1.6485 29 6 6.8057 -0.5546 -1.0809 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4425 -0.0005 37 1 3.4420 -3.5959 0.3657 38 1 2.6296 -2.4486 -0.7261 39 1 5.5317 -4.5236 -1.8646 40 1 3.8561 -3.9651 -1.6250 41 1 4.4442 -4.3138 -4.0508 42 1 3.9584 -2.6409 -3.6824 43 1 5.7720 -1.7507 -5.8036 44 1 5.7338 -2.0480 -9.1259 45 1 7.3892 -1.2275 -3.7073 46 1 5.6628 -0.8547 -3.4841 47 1 6.9937 -0.7587 -0.0268 48 1 7.6665 -0.0428 -1.5112 49 1 5.9223 0.0770 -1.1767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044778576.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:16 Heat of formation + Delta-G solvation = 102.036891 kcal Electronic energy + Delta-G solvation = -30459.716442 eV Core-core repulsion = 26460.387295 eV Total energy + Delta-G solvation = -3999.329148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.34912 -40.79659 -37.84519 -36.44814 -35.65547 -34.75899 -33.10432 -32.12246 -31.59140 -29.77393 -28.88876 -27.54179 -27.15721 -24.65470 -24.54798 -23.73336 -23.15829 -22.06105 -20.93721 -20.39337 -19.42755 -18.02500 -17.61867 -17.24166 -16.49960 -16.33869 -15.74193 -15.55724 -15.00093 -14.90636 -14.31095 -14.08181 -13.91427 -13.83760 -13.59389 -13.55705 -13.35215 -12.98252 -12.78659 -12.53019 -12.39963 -12.34860 -12.17943 -11.96699 -11.81010 -11.68267 -11.61024 -11.51483 -11.36321 -11.12486 -11.04027 -10.99262 -10.97673 -10.63493 -10.34687 -10.16964 -10.01678 -9.86267 -9.34011 -9.05638 -8.76260 -7.12527 -5.90373 -3.20498 1.01453 1.59359 2.11549 2.13748 2.68617 3.33306 3.39153 3.41685 3.61219 3.86267 3.88504 4.17310 4.36459 4.45092 4.62000 4.70449 4.73332 4.88350 4.94284 5.04362 5.09983 5.23091 5.26977 5.30811 5.33903 5.40732 5.44988 5.49340 5.52804 5.56463 5.58821 5.67415 5.81501 5.83453 5.88935 5.92944 5.95587 6.06933 6.12165 6.22358 6.26674 6.34439 6.50893 6.68432 6.83536 7.11510 7.56549 7.76302 8.27405 8.47760 9.39203 9.94932 10.29250 11.31894 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017387 B = 0.002730 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.023973 B =10253.114745 C =10677.609760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 C -0.143 4.143 4 C 0.205 3.795 5 N -0.302 5.302 6 N -0.076 5.076 7 N -0.088 5.088 8 N -0.293 5.293 9 C 0.088 3.912 10 C 0.503 3.497 11 O -0.518 6.518 12 N -0.592 5.592 13 C 0.101 3.899 14 C -0.153 4.153 15 C 0.179 3.821 16 H 0.049 0.951 17 N -0.723 5.723 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.135 4.135 27 C 0.149 3.851 28 H 0.076 0.924 29 C -0.138 4.138 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 1.121 14.697 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.201 4.201 4 C -0.073 4.073 5 N -0.150 5.150 6 N -0.069 5.069 7 N -0.073 5.073 8 N -0.093 5.093 9 C -0.038 4.038 10 C 0.287 3.713 11 O -0.394 6.394 12 N -0.326 5.326 13 C -0.022 4.022 14 C -0.194 4.194 15 C 0.068 3.932 16 H 0.067 0.933 17 N -0.363 5.363 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.174 4.174 27 C 0.047 3.953 28 H 0.094 0.906 29 C -0.196 4.196 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.068 0.932 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.093 1.281 16.347 17.866 hybrid contribution 0.102 -0.757 -2.034 2.173 sum -6.992 0.524 14.313 15.938 Atomic orbital electron populations 1.21852 0.91903 1.02697 1.03738 1.19810 0.97367 0.96654 0.89552 1.21821 1.01944 0.92969 1.03399 1.26087 0.94807 0.88495 0.97954 1.74944 1.20881 1.20834 0.98353 1.78587 1.06943 0.98930 1.22464 1.78866 1.19094 1.22069 0.87262 1.47892 1.33657 1.20948 1.06822 1.22168 0.96914 0.98530 0.86176 1.20160 0.85890 0.84008 0.81247 1.90855 1.67306 1.28638 1.52604 1.48184 1.25518 1.28642 1.30287 1.22020 0.99126 0.86340 0.94710 1.22724 1.02046 1.02817 0.91791 1.20156 0.93556 0.93959 0.85527 0.93289 1.42422 1.84930 1.10257 0.98704 1.19253 1.40818 0.90185 0.87183 0.91083 1.24757 1.02411 0.96568 0.96997 1.69665 1.55321 1.19255 1.13573 0.86146 0.77401 0.81285 0.81491 1.20521 1.21826 1.21811 1.22246 1.02928 0.99642 0.92627 1.21301 0.84592 0.95160 0.94270 0.90624 1.22201 1.01292 0.95313 1.00760 0.90633 0.90987 0.92391 0.89068 0.90779 0.91125 0.91896 0.84180 0.84365 0.90487 0.90732 0.90196 0.92009 0.78215 0.93441 0.90264 0.91712 0.90687 0.93249 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.17 37.15 0.34 -0.63 16 2 C -0.01 -0.10 3.26 -91.77 -0.30 -0.40 16 3 C -0.14 -1.22 9.18 37.16 0.34 -0.88 16 4 C 0.20 2.37 6.64 -155.43 -1.03 1.34 16 5 N -0.30 -4.29 12.36 32.70 0.40 -3.88 16 6 N -0.08 -1.18 13.43 60.35 0.81 -0.37 16 7 N -0.09 -1.25 13.29 60.35 0.80 -0.45 16 8 N -0.29 -3.38 2.83 -59.44 -0.17 -3.55 16 9 C 0.09 0.72 4.92 -5.20 -0.03 0.69 16 10 C 0.50 5.58 7.57 -10.99 -0.08 5.50 16 11 O -0.52 -7.53 12.01 5.56 0.07 -7.46 16 12 N -0.59 -6.32 2.98 -165.48 -0.49 -6.81 16 13 C 0.10 0.93 6.35 -3.71 -0.02 0.90 16 14 C -0.15 -2.02 5.66 -26.61 -0.15 -2.17 16 15 C 0.18 2.94 2.73 -67.88 -0.19 2.75 16 16 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 17 N -0.72 -16.12 5.12 -53.38 -0.27 -16.40 16 18 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -26.51 13.06 55.49 0.72 -25.78 16 22 Si 0.91 21.04 29.55 -169.99 -5.02 16.02 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.14 -1.92 4.81 -26.83 -0.13 -2.05 16 27 C 0.15 1.81 3.47 -67.82 -0.24 1.57 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 C -0.14 -1.75 7.60 37.16 0.28 -1.47 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 33 H 0.09 0.63 6.85 -51.93 -0.36 0.27 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.14 0.80 7.70 -51.93 -0.40 0.40 16 38 H 0.14 0.69 6.92 -51.93 -0.36 0.33 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.44 5.93 -51.93 -0.31 0.13 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.38 9.32 7.80 -40.82 -0.32 9.00 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 47 H 0.07 1.05 6.53 -51.93 -0.34 0.71 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.85 6.97 -51.92 -0.36 0.49 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -32.81 391.51 -6.60 -39.41 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.90 Total: 4.89 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.45 Total: -1.53 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 1.81 Total: -57.24 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.07 Total: -7.46 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.81 -6.60 -39.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044778576.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.450 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds