Wall clock time and date at job start Tue Mar 31 2020 21:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 C 1.50700 * 109.47407 * 119.99936 * 2 1 3 5 5 N 1.31072 * 126.66016 * 299.68993 * 4 2 1 6 6 N 1.28843 * 107.98855 * 179.89385 * 5 4 2 7 7 N 1.28733 * 109.39787 * 0.37451 * 6 5 4 8 8 N 1.29020 * 108.81213 * 359.76663 * 7 6 5 9 9 C 1.46494 * 126.44015 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47481 * 269.97612 * 9 8 7 11 11 O 1.21281 * 119.99519 * 0.02562 * 10 9 8 12 12 N 1.34767 * 120.00239 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63278 * 354.20036 * 12 10 9 14 14 C 1.53197 * 108.77772 * 126.36686 * 13 12 10 15 15 C 1.53045 * 109.30879 * 54.63619 * 14 13 12 16 16 H 1.08997 * 109.45998 * 58.64266 * 15 14 13 17 17 N 1.46503 * 109.45672 * 178.61811 * 15 14 13 18 18 C 1.36942 * 119.99607 * 275.00131 * 17 15 14 19 19 H 1.08001 * 120.00249 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99873 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00099 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47483 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47071 * 119.99787 * 22 20 18 25 25 H 1.48499 * 109.47281 * 239.99406 * 22 20 18 26 26 C 1.53042 * 109.53835 * 298.63594 * 15 14 13 27 27 C 1.46925 * 120.63077 * 173.92074 * 12 10 9 28 28 H 1.09001 * 109.59094 * 113.84563 * 27 12 10 29 29 C 1.53001 * 109.58897 * 353.42182 * 27 12 10 30 30 H 1.09002 * 109.47788 * 59.99946 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99727 * 1 2 3 32 32 H 1.09009 * 109.47183 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47182 * 239.99824 * 2 1 3 34 34 H 1.09002 * 109.46963 * 299.99912 * 3 2 1 35 35 H 1.09001 * 109.47177 * 59.99821 * 3 2 1 36 36 H 1.08997 * 109.47281 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.47039 * 29.97704 * 9 8 7 38 38 H 1.08997 * 109.47317 * 149.97681 * 9 8 7 39 39 H 1.08995 * 109.59053 * 246.15502 * 13 12 10 40 40 H 1.08998 * 109.58776 * 6.57995 * 13 12 10 41 41 H 1.08997 * 109.49647 * 174.59116 * 14 13 12 42 42 H 1.09000 * 109.49521 * 294.69022 * 14 13 12 43 43 H 0.96991 * 120.00247 * 94.99837 * 17 15 14 44 44 H 0.97004 * 120.00471 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.49441 * 181.32198 * 26 15 14 46 46 H 1.09007 * 109.49451 * 301.38177 * 26 15 14 47 47 H 1.08997 * 109.46892 * 65.79659 * 29 27 12 48 48 H 1.09000 * 109.47611 * 185.80684 * 29 27 12 49 49 H 1.09007 * 109.46941 * 305.80254 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.8022 -0.3750 2.4765 6 7 2.3999 -1.2280 3.2350 7 7 3.0118 -2.0941 2.5051 8 7 2.8092 -1.8091 1.2632 9 6 3.3269 -2.5435 0.1062 10 6 4.6646 -1.9752 -0.2921 11 8 5.1390 -1.0482 0.3297 12 7 5.3342 -2.4976 -1.3385 13 6 4.8361 -3.6993 -2.0214 14 6 4.7207 -3.4028 -3.5200 15 6 6.0678 -2.8967 -4.0409 16 1 6.8346 -3.6489 -3.8555 17 7 5.9704 -2.6435 -5.4806 18 6 6.1593 -3.6673 -6.3702 19 1 6.3806 -4.6613 -6.0105 20 6 6.0675 -3.4272 -7.7343 21 7 5.7983 -2.2157 -8.1727 22 14 6.3259 -4.8236 -8.9478 23 1 6.6138 -6.0773 -8.2059 24 1 5.0992 -5.0022 -9.7654 25 1 7.4707 -4.5011 -9.8370 26 6 6.4412 -1.5998 -3.3192 27 6 6.5730 -1.8727 -1.8220 28 1 7.4132 -2.5450 -1.6485 29 6 6.8057 -0.5546 -1.0809 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4425 -0.0005 37 1 3.4420 -3.5959 0.3657 38 1 2.6296 -2.4486 -0.7261 39 1 5.5317 -4.5236 -1.8646 40 1 3.8561 -3.9651 -1.6250 41 1 4.4442 -4.3138 -4.0508 42 1 3.9584 -2.6409 -3.6824 43 1 5.7720 -1.7507 -5.8036 44 1 5.7338 -2.0480 -9.1259 45 1 7.3892 -1.2275 -3.7073 46 1 5.6628 -0.8547 -3.4841 47 1 6.9937 -0.7587 -0.0268 48 1 7.6665 -0.0428 -1.5112 49 1 5.9223 0.0770 -1.1767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044778576.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:15 Heat of formation + Delta-G solvation = 80.167330 kcal Electronic energy + Delta-G solvation = -30460.664778 eV Core-core repulsion = 26460.387295 eV Total energy + Delta-G solvation = -4000.277483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -45.29426 -41.73322 -38.95066 -37.19368 -36.55418 -36.20213 -34.17014 -33.67221 -32.49294 -31.14148 -29.90934 -28.28878 -28.13365 -26.05659 -25.48547 -24.78731 -24.41021 -23.04068 -21.82664 -21.50417 -20.43392 -19.13265 -18.80651 -18.48691 -17.42939 -17.21440 -16.71613 -16.55737 -16.46144 -15.67161 -15.49801 -15.41405 -15.07385 -14.87612 -14.62776 -14.49536 -14.21850 -14.20090 -13.71523 -13.47727 -13.37362 -13.19684 -13.11063 -13.06662 -12.89551 -12.69539 -12.66374 -12.62397 -12.33471 -12.31823 -12.28831 -12.09160 -12.02008 -11.94102 -11.90171 -11.69130 -11.34275 -11.09377 -10.87652 -10.30728 -9.71875 -8.97092 -7.90900 -5.18648 0.09643 0.81579 1.13380 1.30108 1.50001 1.51645 1.60079 1.83109 2.58814 2.86229 3.10326 3.13796 3.43443 3.56593 3.73943 3.79921 3.86005 3.99650 4.02741 4.04290 4.09363 4.18311 4.25377 4.34475 4.36823 4.57310 4.61791 4.63739 4.70600 4.75319 4.76196 4.81152 4.81982 4.88262 4.93475 5.02395 5.08734 5.09657 5.15364 5.23156 5.26643 5.33251 5.42134 5.52788 5.57723 5.67667 6.25361 6.31557 6.90497 7.38061 7.49060 8.14683 8.35920 9.32714 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017387 B = 0.002730 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.023973 B =10253.114745 C =10677.609760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.012 4.012 3 C -0.141 4.141 4 C 0.210 3.790 5 N -0.327 5.327 6 N -0.107 5.107 7 N -0.101 5.101 8 N -0.289 5.289 9 C 0.082 3.918 10 C 0.503 3.497 11 O -0.556 6.556 12 N -0.590 5.590 13 C 0.107 3.893 14 C -0.142 4.142 15 C 0.171 3.829 16 H 0.046 0.954 17 N -0.738 5.738 18 C -0.229 4.229 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.965 3.035 23 H -0.263 1.263 24 H -0.297 1.297 25 H -0.301 1.301 26 C -0.122 4.122 27 C 0.156 3.844 28 H 0.085 0.915 29 C -0.126 4.126 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 -0.777 14.928 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.199 4.199 4 C -0.068 4.068 5 N -0.176 5.176 6 N -0.100 5.100 7 N -0.087 5.087 8 N -0.090 5.090 9 C -0.042 4.042 10 C 0.289 3.711 11 O -0.435 6.435 12 N -0.323 5.323 13 C -0.015 4.015 14 C -0.183 4.183 15 C 0.062 3.938 16 H 0.064 0.936 17 N -0.377 5.377 18 C -0.361 4.361 19 H 0.098 0.902 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.795 3.205 23 H -0.187 1.187 24 H -0.224 1.224 25 H -0.229 1.229 26 C -0.161 4.161 27 C 0.053 3.947 28 H 0.103 0.897 29 C -0.184 4.184 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.191 0.809 38 H 0.197 0.803 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.202 0.798 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.170 -0.673 16.631 18.542 hybrid contribution 0.496 -0.133 -2.063 2.126 sum -7.674 -0.806 14.569 16.486 Atomic orbital electron populations 1.21847 0.90440 1.03340 1.04142 1.20065 0.98467 0.96076 0.88782 1.21803 1.00461 0.93596 1.04039 1.26655 0.93871 0.88163 0.98115 1.74867 1.21766 1.21342 0.99649 1.78551 1.08093 0.99807 1.23574 1.78765 1.19216 1.22243 0.88452 1.48096 1.33141 1.20993 1.06754 1.22623 0.95743 0.99529 0.86310 1.20598 0.86611 0.83281 0.80603 1.90862 1.68420 1.30390 1.53850 1.48169 1.24893 1.28927 1.30306 1.22129 1.02076 0.85744 0.91568 1.22467 0.99180 1.01994 0.94651 1.20446 0.95519 0.95012 0.82786 0.93613 1.42653 1.85007 1.09029 1.00986 1.19637 1.37807 0.91019 0.87650 0.90228 1.25474 1.04029 0.98488 0.98881 1.69811 1.58043 1.21164 1.13149 0.85191 0.76433 0.79532 0.79334 1.18736 1.22412 1.22859 1.22067 1.01939 0.98248 0.93891 1.21126 0.85904 0.95262 0.92444 0.89748 1.22038 1.00855 0.95468 0.99999 0.88605 0.92229 0.91633 0.86850 0.88576 0.92096 0.94093 0.80871 0.80341 0.89082 0.86119 0.91095 0.92320 0.79791 0.94286 0.91549 0.92452 0.91892 0.92846 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.17 71.98 0.66 -0.84 16 2 C -0.01 -0.17 3.26 -11.54 -0.04 -0.21 16 3 C -0.14 -2.23 9.18 71.98 0.66 -1.57 16 4 C 0.21 4.52 6.64 138.13 0.92 5.44 16 5 N -0.33 -9.21 12.36 -50.45 -0.62 -9.83 16 6 N -0.11 -3.31 13.43 37.01 0.50 -2.81 16 7 N -0.10 -2.76 13.29 37.02 0.49 -2.26 16 8 N -0.29 -6.00 2.83 -341.98 -0.97 -6.96 16 9 C 0.08 0.98 4.92 85.63 0.42 1.40 16 10 C 0.50 9.65 7.57 87.66 0.66 10.32 16 11 O -0.56 -15.45 12.01 -3.03 -0.04 -15.49 16 12 N -0.59 -10.65 2.98 -795.85 -2.37 -13.02 16 13 C 0.11 1.46 6.35 86.37 0.55 2.01 16 14 C -0.14 -3.32 5.66 30.68 0.17 -3.15 16 15 C 0.17 5.35 2.73 45.02 0.12 5.47 16 16 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 17 N -0.74 -32.61 5.12 -322.79 -1.65 -34.26 16 18 C -0.23 -11.42 9.93 84.03 0.83 -10.58 16 19 H 0.08 3.76 7.83 -2.91 -0.02 3.73 16 20 C -0.08 -4.10 5.50 84.86 0.47 -3.63 16 21 N -0.97 -56.24 13.06 21.65 0.28 -55.96 16 22 Si 0.96 43.22 29.55 68.60 2.03 45.25 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 26 C -0.12 -3.34 4.81 30.53 0.15 -3.20 16 27 C 0.16 3.49 3.47 44.83 0.16 3.65 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 C -0.13 -3.10 7.60 71.98 0.55 -2.56 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.11 1.11 6.85 -2.39 -0.02 1.09 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.17 0.98 7.70 -2.38 -0.02 0.96 16 38 H 0.18 0.70 6.92 -2.39 -0.02 0.69 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.12 0.63 5.93 -2.39 -0.01 0.62 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.37 18.20 7.80 -92.72 -0.72 17.48 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.06 1.73 6.53 -2.39 -0.02 1.71 16 48 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.05 1.33 6.97 -2.38 -0.02 1.31 16 Total: -1.00 -74.75 391.51 4.16 -70.58 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.23 Total: 22.23 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.28 Total: 2.54 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -4.34 Total: -125.12 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.04 Total: -15.49 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -74.75 4.16 -70.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044778576.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.751 kcal (2) G-P(sol) polarization free energy of solvation -74.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds