Wall clock time and date at job start Tue Mar 31 2020 19:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47094 * 2 1 4 4 C 1.52996 * 109.47462 * 239.99926 * 2 1 3 5 5 N 1.46498 * 109.47260 * 119.99918 * 2 1 3 6 6 N 1.28725 * 125.32212 * 240.04720 * 5 2 1 7 7 N 1.28976 * 108.99022 * 179.72317 * 6 5 2 8 8 C 1.34189 * 107.25149 * 0.36982 * 7 6 5 9 9 C 1.48009 * 126.69989 * 179.89024 * 8 7 6 10 10 O 1.21535 * 120.00052 * 179.68799 * 9 8 7 11 11 N 1.34777 * 119.99717 * 359.69402 * 9 8 7 12 12 C 1.46500 * 119.99458 * 179.72190 * 11 9 8 13 13 C 1.52997 * 109.46337 * 60.30067 * 12 11 9 14 14 C 1.53039 * 109.46014 * 300.33990 * 12 11 9 15 15 C 1.53196 * 109.31528 * 301.34403 * 14 12 11 16 16 N 1.46921 * 108.77871 * 305.36978 * 15 14 12 17 17 C 1.36939 * 120.63166 * 233.63041 * 16 15 14 18 18 H 1.08000 * 120.00054 * 27.65906 * 17 16 15 19 19 C 1.38810 * 120.00122 * 207.66350 * 17 16 15 20 20 N 1.31623 * 119.99908 * 17.36034 * 19 17 16 21 21 Si 1.86793 * 119.99964 * 197.35703 * 19 17 16 22 22 H 1.48499 * 109.47245 * 60.00186 * 21 19 17 23 23 H 1.48505 * 109.47216 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47530 * 299.99945 * 21 19 17 25 25 C 1.46933 * 118.74057 * 53.60044 * 16 15 14 26 26 C 1.53042 * 109.45759 * 180.27531 * 12 11 9 27 27 N 1.28874 * 125.32079 * 59.99607 * 5 2 1 28 28 H 1.08997 * 109.47200 * 300.00389 * 1 2 3 29 29 H 1.08999 * 109.46823 * 60.00461 * 1 2 3 30 30 H 1.09002 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46930 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46843 * 300.00029 * 3 2 1 33 33 H 1.09001 * 109.46540 * 59.99900 * 3 2 1 34 34 H 1.09002 * 109.47204 * 299.99936 * 4 2 1 35 35 H 1.09009 * 109.47327 * 59.99924 * 4 2 1 36 36 H 1.09007 * 109.47329 * 179.97438 * 4 2 1 37 37 H 0.96991 * 120.00102 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.47187 * 59.99631 * 13 12 11 39 39 H 1.09005 * 109.47324 * 179.97438 * 13 12 11 40 40 H 1.09001 * 109.47226 * 299.99806 * 13 12 11 41 41 H 1.09001 * 109.50143 * 61.29933 * 14 12 11 42 42 H 1.09010 * 109.49910 * 181.39940 * 14 12 11 43 43 H 1.08995 * 109.58593 * 185.57624 * 15 14 12 44 44 H 1.09003 * 109.57880 * 65.15642 * 15 14 12 45 45 H 0.96999 * 119.99900 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.58318 * 186.60528 * 25 16 15 47 47 H 1.09000 * 109.69781 * 66.24764 * 25 16 15 48 48 H 1.09003 * 109.50062 * 178.60811 * 26 12 11 49 49 H 1.09002 * 109.49613 * 298.67106 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 2.7608 -0.1659 2.1074 7 7 2.9979 -1.0500 3.0161 8 6 2.3771 -2.1798 2.6437 9 6 2.3687 -3.4667 3.3748 10 8 1.7577 -4.4166 2.9259 11 7 3.0384 -3.5850 4.5384 12 6 3.0250 -4.8570 5.2651 13 6 3.6280 -5.9535 4.3847 14 6 1.5830 -5.2253 5.6216 15 6 0.9711 -4.1094 6.4744 16 7 1.8384 -3.8726 7.6365 17 6 1.3279 -3.9067 8.9066 18 1 0.4607 -4.5127 9.1240 19 6 1.9248 -3.1624 9.9149 20 7 2.7439 -2.1784 9.6095 21 14 1.5656 -3.5573 11.7049 22 1 1.9794 -4.9533 11.9966 23 1 2.3206 -2.6238 12.5789 24 1 0.1106 -3.4083 11.9625 25 6 3.2642 -3.5991 7.4099 26 6 3.8503 -4.7207 6.5467 27 7 1.7710 -1.9181 1.5010 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1393 36 1 3.1301 -0.7208 -1.2494 37 1 3.5262 -2.8270 4.8964 38 1 4.6549 -5.6913 4.1300 39 1 3.6185 -6.8999 4.9254 40 1 3.0406 -6.0504 3.4716 41 1 1.0014 -5.3452 4.7076 42 1 1.5744 -6.1591 6.1840 43 1 -0.0200 -4.4104 6.8135 44 1 0.8957 -3.1971 5.8827 45 1 3.1613 -1.6585 10.3141 46 1 3.7858 -3.5633 8.3663 47 1 3.3780 -2.6448 6.8956 48 1 3.8204 -5.6592 7.1003 49 1 4.8826 -4.4819 6.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045444292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:20 Heat of formation + Delta-G solvation = 114.432914 kcal Electronic energy + Delta-G solvation = -30567.704518 eV Core-core repulsion = 26568.912902 eV Total energy + Delta-G solvation = -3998.791616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.44381 -40.09710 -37.98936 -37.29579 -34.45540 -33.55788 -32.79438 -31.73975 -30.72418 -29.88282 -28.07890 -28.03733 -27.39916 -25.39763 -24.53850 -24.01018 -22.28750 -21.47306 -20.95336 -20.44986 -18.63919 -18.06066 -17.43989 -17.01081 -16.61829 -15.16487 -14.97820 -14.82633 -14.68672 -14.44623 -14.21349 -13.97506 -13.79477 -13.40101 -13.35735 -13.17909 -13.05958 -12.97064 -12.84350 -12.40794 -12.33031 -12.28417 -11.98156 -11.83220 -11.63613 -11.57419 -11.31263 -11.20082 -11.07648 -11.03177 -10.91153 -10.68568 -10.39411 -10.34701 -10.27734 -9.99734 -9.83481 -9.63120 -9.27173 -8.70523 -8.42036 -6.62281 -5.74966 -3.16374 1.01305 1.53577 1.56835 3.00031 3.30681 3.41282 3.46889 3.48370 3.77373 4.04119 4.11075 4.16319 4.53223 4.56406 4.93334 4.94305 4.97141 5.11466 5.15931 5.17679 5.21239 5.33660 5.38725 5.44139 5.48562 5.52333 5.57327 5.60937 5.63558 5.76327 5.99247 6.02805 6.06773 6.20409 6.28677 6.36089 6.42174 6.56776 6.66164 6.71415 6.83398 6.95471 7.06239 7.33786 7.64351 7.72453 7.83645 8.18144 8.35171 8.48889 9.25321 9.88897 10.46092 11.33487 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002991 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.852189 B = 9360.405658 C =10226.241122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 C -0.153 4.153 4 C -0.159 4.159 5 N -0.129 5.129 6 N -0.058 5.058 7 N -0.251 5.251 8 C 0.131 3.869 9 C 0.617 3.383 10 O -0.513 6.513 11 N -0.683 5.683 12 C 0.185 3.815 13 C -0.162 4.162 14 C -0.145 4.145 15 C 0.149 3.851 16 N -0.590 5.590 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.170 3.830 26 C -0.145 4.145 27 N -0.249 5.249 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.411 0.589 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.013 0.987 45 H 0.254 0.746 46 H 0.091 0.909 47 H 0.019 0.981 48 H 0.075 0.925 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 3.922 -22.063 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 C -0.211 4.211 4 C -0.218 4.218 5 N -0.044 5.044 6 N -0.050 5.050 7 N -0.126 5.126 8 C -0.154 4.154 9 C 0.396 3.604 10 O -0.386 6.386 11 N -0.335 5.335 12 C 0.100 3.900 13 C -0.220 4.220 14 C -0.184 4.184 15 C 0.023 3.977 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.044 3.956 26 C -0.185 4.185 27 N -0.102 5.102 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.037 0.963 48 H 0.093 0.907 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.498 3.946 -22.365 22.716 hybrid contribution -0.027 -0.087 1.236 1.239 sum 0.471 3.859 -21.129 21.483 Atomic orbital electron populations 1.22262 0.90640 1.04832 1.04192 1.21476 0.96376 0.93079 0.79424 1.22107 1.03213 0.91369 1.04443 1.22252 1.02447 1.02127 0.94958 1.50726 1.30013 1.05505 1.18114 1.78888 1.08569 1.22130 0.95442 1.76200 1.19569 0.98097 1.18728 1.25534 0.99339 0.97397 0.93099 1.16095 0.80241 0.83027 0.81022 1.90756 1.43055 1.37205 1.67606 1.45937 1.50748 1.16154 1.20676 1.20420 0.97114 0.81423 0.91027 1.22248 1.00429 0.98238 1.01106 1.22432 0.94952 1.00554 1.00500 1.20838 0.93796 0.94226 0.88852 1.44031 1.03104 1.82932 1.01235 1.19149 1.13133 1.21009 0.84787 0.91771 1.25018 1.00565 0.95608 0.98472 1.70021 1.33928 1.19192 1.31542 0.86382 0.77766 0.77614 0.85070 1.21072 1.21691 1.21000 1.20772 0.84881 0.91492 0.98485 1.22536 0.97527 1.03434 0.95002 1.74959 1.20851 0.98873 1.15502 0.91171 0.89055 0.90200 0.90501 0.89177 0.90397 0.90231 0.89059 0.91331 0.75224 0.93078 0.91790 0.90901 0.90827 0.91366 0.92977 0.96875 0.93623 0.89114 0.96345 0.90662 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.66 37.16 0.32 -0.74 16 2 C 0.18 1.38 1.30 -131.82 -0.17 1.21 16 3 C -0.15 -0.89 7.90 37.16 0.29 -0.60 16 4 C -0.16 -0.96 8.66 37.16 0.32 -0.64 16 5 N -0.13 -1.63 3.72 0.52 0.00 -1.63 16 6 N -0.06 -0.84 12.21 60.35 0.74 -0.10 16 7 N -0.25 -4.20 12.26 32.10 0.39 -3.81 16 8 C 0.13 2.20 8.14 -156.24 -1.27 0.93 16 9 C 0.62 10.96 7.25 -12.25 -0.09 10.88 16 10 O -0.51 -9.88 13.31 5.33 0.07 -9.81 16 11 N -0.68 -11.81 4.10 -48.45 -0.20 -12.01 16 12 C 0.18 3.20 0.66 -131.78 -0.09 3.12 16 13 C -0.16 -2.46 8.40 37.16 0.31 -2.15 16 14 C -0.14 -2.74 4.66 -26.61 -0.12 -2.86 16 15 C 0.15 3.31 6.26 -3.71 -0.02 3.29 16 16 N -0.59 -14.79 3.00 -172.32 -0.52 -15.31 16 17 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 18 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 20 N -0.90 -26.05 11.19 55.49 0.62 -25.43 16 21 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.17 3.92 5.04 -3.71 -0.02 3.90 16 26 C -0.15 -2.66 4.96 -26.61 -0.13 -2.79 16 27 N -0.25 -3.79 11.85 32.11 0.38 -3.41 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.28 8.14 -51.92 -0.42 -0.15 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.41 7.10 7.02 -40.82 -0.29 6.82 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.18 6.18 -51.93 -0.32 0.86 16 41 H 0.07 1.40 6.19 -51.93 -0.32 1.08 16 42 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 43 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.01 0.31 7.74 -51.93 -0.40 -0.09 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.09 2.36 6.03 -51.93 -0.31 2.04 16 47 H 0.02 0.44 6.94 -51.93 -0.36 0.08 16 48 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -32.49 387.13 -6.48 -38.97 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.88 Total: 3.50 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.90 Total: 6.44 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 1.42 Total: -61.69 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.49 -6.48 -38.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045444292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.404 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds