Wall clock time and date at job start Tue Mar 31 2020 19:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47094 * 2 1 4 4 C 1.52996 * 109.47462 * 239.99926 * 2 1 3 5 5 N 1.46498 * 109.47260 * 119.99918 * 2 1 3 6 6 N 1.28725 * 125.32212 * 240.04720 * 5 2 1 7 7 N 1.28976 * 108.99022 * 179.72317 * 6 5 2 8 8 C 1.34189 * 107.25149 * 0.36982 * 7 6 5 9 9 C 1.48009 * 126.69989 * 179.89024 * 8 7 6 10 10 O 1.21535 * 120.00052 * 179.68799 * 9 8 7 11 11 N 1.34777 * 119.99717 * 359.69402 * 9 8 7 12 12 C 1.46500 * 119.99458 * 179.72190 * 11 9 8 13 13 C 1.52997 * 109.46337 * 60.30067 * 12 11 9 14 14 C 1.53039 * 109.46014 * 300.33990 * 12 11 9 15 15 C 1.53196 * 109.31528 * 301.34403 * 14 12 11 16 16 N 1.46921 * 108.77871 * 305.36978 * 15 14 12 17 17 C 1.36939 * 120.63166 * 233.63041 * 16 15 14 18 18 H 1.08000 * 120.00054 * 27.65906 * 17 16 15 19 19 C 1.38810 * 120.00122 * 207.66350 * 17 16 15 20 20 N 1.31623 * 119.99908 * 17.36034 * 19 17 16 21 21 Si 1.86793 * 119.99964 * 197.35703 * 19 17 16 22 22 H 1.48499 * 109.47245 * 60.00186 * 21 19 17 23 23 H 1.48505 * 109.47216 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47530 * 299.99945 * 21 19 17 25 25 C 1.46933 * 118.74057 * 53.60044 * 16 15 14 26 26 C 1.53042 * 109.45759 * 180.27531 * 12 11 9 27 27 N 1.28874 * 125.32079 * 59.99607 * 5 2 1 28 28 H 1.08997 * 109.47200 * 300.00389 * 1 2 3 29 29 H 1.08999 * 109.46823 * 60.00461 * 1 2 3 30 30 H 1.09002 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46930 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46843 * 300.00029 * 3 2 1 33 33 H 1.09001 * 109.46540 * 59.99900 * 3 2 1 34 34 H 1.09002 * 109.47204 * 299.99936 * 4 2 1 35 35 H 1.09009 * 109.47327 * 59.99924 * 4 2 1 36 36 H 1.09007 * 109.47329 * 179.97438 * 4 2 1 37 37 H 0.96991 * 120.00102 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.47187 * 59.99631 * 13 12 11 39 39 H 1.09005 * 109.47324 * 179.97438 * 13 12 11 40 40 H 1.09001 * 109.47226 * 299.99806 * 13 12 11 41 41 H 1.09001 * 109.50143 * 61.29933 * 14 12 11 42 42 H 1.09010 * 109.49910 * 181.39940 * 14 12 11 43 43 H 1.08995 * 109.58593 * 185.57624 * 15 14 12 44 44 H 1.09003 * 109.57880 * 65.15642 * 15 14 12 45 45 H 0.96999 * 119.99900 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.58318 * 186.60528 * 25 16 15 47 47 H 1.09000 * 109.69781 * 66.24764 * 25 16 15 48 48 H 1.09003 * 109.50062 * 178.60811 * 26 12 11 49 49 H 1.09002 * 109.49613 * 298.67106 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 2.7608 -0.1659 2.1074 7 7 2.9979 -1.0500 3.0161 8 6 2.3771 -2.1798 2.6437 9 6 2.3687 -3.4667 3.3748 10 8 1.7577 -4.4166 2.9259 11 7 3.0384 -3.5850 4.5384 12 6 3.0250 -4.8570 5.2651 13 6 3.6280 -5.9535 4.3847 14 6 1.5830 -5.2253 5.6216 15 6 0.9711 -4.1094 6.4744 16 7 1.8384 -3.8726 7.6365 17 6 1.3279 -3.9067 8.9066 18 1 0.4607 -4.5127 9.1240 19 6 1.9248 -3.1624 9.9149 20 7 2.7439 -2.1784 9.6095 21 14 1.5656 -3.5573 11.7049 22 1 1.9794 -4.9533 11.9966 23 1 2.3206 -2.6238 12.5789 24 1 0.1106 -3.4083 11.9625 25 6 3.2642 -3.5991 7.4099 26 6 3.8503 -4.7207 6.5467 27 7 1.7710 -1.9181 1.5010 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1393 36 1 3.1301 -0.7208 -1.2494 37 1 3.5262 -2.8270 4.8964 38 1 4.6549 -5.6913 4.1300 39 1 3.6185 -6.8999 4.9254 40 1 3.0406 -6.0504 3.4716 41 1 1.0014 -5.3452 4.7076 42 1 1.5744 -6.1591 6.1840 43 1 -0.0200 -4.4104 6.8135 44 1 0.8957 -3.1971 5.8827 45 1 3.1613 -1.6585 10.3141 46 1 3.7858 -3.5633 8.3663 47 1 3.3780 -2.6448 6.8956 48 1 3.8204 -5.6592 7.1003 49 1 4.8826 -4.4819 6.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045444292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:19 Heat of formation + Delta-G solvation = 92.969655 kcal Electronic energy + Delta-G solvation = -30568.635235 eV Core-core repulsion = 26568.912902 eV Total energy + Delta-G solvation = -3999.722333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.58753 -41.54491 -39.05402 -38.55358 -36.19760 -34.70033 -34.09748 -33.37878 -32.26897 -31.60123 -29.08730 -28.62062 -28.53826 -26.57771 -25.86935 -25.61335 -23.98300 -22.95348 -22.21752 -21.71276 -20.19754 -19.32738 -18.63091 -18.54408 -17.73808 -16.84137 -16.61357 -16.23339 -15.81749 -15.50215 -15.27249 -15.26343 -15.17321 -15.07167 -14.83418 -14.62215 -14.12207 -13.99628 -13.48753 -13.37140 -13.25260 -13.22402 -13.10620 -13.07278 -12.86607 -12.85352 -12.64605 -12.61318 -12.51413 -12.34671 -12.21796 -12.11751 -12.09240 -12.00160 -11.77607 -11.59397 -11.44293 -11.34026 -10.87307 -10.51549 -10.12741 -8.65796 -7.85444 -5.30230 -0.14880 0.27365 0.66832 1.48366 1.50104 1.57249 1.73206 1.95107 2.52771 2.82126 2.95862 3.28851 3.48360 3.56066 3.63337 3.70148 3.80691 3.99026 4.05601 4.10329 4.30090 4.41597 4.47784 4.52143 4.58806 4.60215 4.62932 4.71742 4.72309 4.72649 4.75447 4.88480 4.93190 4.96959 5.01385 5.10595 5.10978 5.17789 5.18763 5.21254 5.28871 5.36201 5.46533 5.55795 5.65313 5.77331 6.32521 6.40976 6.88042 7.06567 7.17049 7.86983 8.39577 9.20355 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002991 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.852189 B = 9360.405658 C =10226.241122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.109 5.109 6 N -0.061 5.061 7 N -0.275 5.275 8 C 0.112 3.888 9 C 0.619 3.381 10 O -0.531 6.531 11 N -0.682 5.682 12 C 0.186 3.814 13 C -0.152 4.152 14 C -0.132 4.132 15 C 0.151 3.849 16 N -0.605 5.605 17 C -0.266 4.266 18 H 0.063 0.937 19 C -0.047 4.047 20 N -0.930 5.930 21 Si 0.966 3.034 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.280 1.280 25 C 0.176 3.824 26 C -0.130 4.130 27 N -0.254 5.254 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.410 0.590 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.045 0.955 44 H -0.003 1.003 45 H 0.250 0.750 46 H 0.060 0.940 47 H 0.001 0.999 48 H 0.079 0.921 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 3.729 -23.858 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.079 3.921 3 C -0.208 4.208 4 C -0.213 4.213 5 N -0.026 5.026 6 N -0.053 5.053 7 N -0.148 5.148 8 C -0.172 4.172 9 C 0.399 3.601 10 O -0.406 6.406 11 N -0.333 5.333 12 C 0.101 3.899 13 C -0.210 4.210 14 C -0.172 4.172 15 C 0.025 3.975 16 N -0.329 5.329 17 C -0.396 4.396 18 H 0.080 0.920 19 C -0.242 4.242 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.206 1.206 25 C 0.051 3.949 26 C -0.170 4.170 27 N -0.108 5.108 28 H 0.076 0.924 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.247 0.753 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.015 0.985 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.019 0.981 48 H 0.098 0.902 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.585 3.749 -24.176 24.472 hybrid contribution -0.146 0.099 1.662 1.672 sum 0.439 3.848 -22.514 22.845 Atomic orbital electron populations 1.22317 0.89502 1.04248 1.05570 1.22250 0.97348 0.94103 0.78366 1.22182 1.02880 0.89954 1.05787 1.22299 1.02127 1.01582 0.95317 1.51367 1.28204 1.04701 1.18362 1.78806 1.09079 1.21777 0.95669 1.76159 1.20484 0.98354 1.19841 1.25370 1.00585 0.97322 0.93896 1.16154 0.79776 0.83208 0.80932 1.90734 1.43799 1.37898 1.68122 1.45930 1.50646 1.16166 1.20567 1.20433 0.95969 0.82296 0.91195 1.22146 1.00840 0.97839 1.00154 1.22278 0.95929 0.99290 0.99682 1.20857 0.93601 0.94730 0.88311 1.44271 1.04241 1.83083 1.01262 1.19446 1.13229 1.20757 0.86138 0.91973 1.25743 1.00788 0.95535 1.02171 1.70175 1.34988 1.20108 1.32349 0.85365 0.77496 0.77435 0.80245 1.20232 1.21956 1.20609 1.20609 0.83980 0.92696 0.97634 1.22343 0.98714 1.01470 0.94445 1.74917 1.20782 1.00126 1.15010 0.92447 0.84998 0.91737 0.91076 0.85227 0.91614 0.91689 0.85102 0.91853 0.75327 0.91505 0.90101 0.91835 0.90787 0.90662 0.93612 0.98508 0.94063 0.92175 0.98056 0.90197 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.66 71.98 0.62 -1.18 16 2 C 0.16 2.19 1.30 3.61 0.00 2.19 16 3 C -0.15 -1.41 7.90 71.99 0.57 -0.84 16 4 C -0.16 -1.51 8.66 71.98 0.62 -0.89 16 5 N -0.11 -2.72 3.72 -152.25 -0.57 -3.29 16 6 N -0.06 -1.79 12.21 37.02 0.45 -1.34 16 7 N -0.27 -9.37 12.26 -52.36 -0.64 -10.01 16 8 C 0.11 3.85 8.14 137.15 1.12 4.97 16 9 C 0.62 22.19 7.25 86.83 0.63 22.82 16 10 O -0.53 -20.44 13.31 -3.83 -0.05 -20.49 16 11 N -0.68 -23.60 4.10 -425.48 -1.74 -25.34 16 12 C 0.19 6.25 0.66 3.63 0.00 6.25 16 13 C -0.15 -4.26 8.40 71.98 0.60 -3.66 16 14 C -0.13 -4.94 4.66 30.67 0.14 -4.80 16 15 C 0.15 6.82 6.26 86.36 0.54 7.36 16 16 N -0.60 -30.87 3.00 -699.09 -2.09 -32.97 16 17 C -0.27 -14.86 9.58 84.03 0.81 -14.05 16 18 H 0.06 3.43 7.89 -2.91 -0.02 3.40 16 19 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 20 N -0.93 -54.95 11.19 21.65 0.24 -54.71 16 21 Si 0.97 45.24 29.59 68.60 2.03 47.26 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 C 0.18 8.29 5.04 86.36 0.43 8.72 16 26 C -0.13 -4.63 4.96 30.67 0.15 -4.48 16 27 N -0.25 -7.78 11.85 -52.31 -0.62 -8.40 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 36 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.41 14.42 7.02 -92.72 -0.65 13.77 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 2.00 8.14 -2.38 -0.02 1.99 16 40 H 0.06 1.95 6.18 -2.39 -0.01 1.93 16 41 H 0.07 2.79 6.19 -2.39 -0.01 2.78 16 42 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 43 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 44 H 0.00 -0.14 7.74 -2.39 -0.02 -0.16 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.06 3.20 6.03 -2.39 -0.01 3.18 16 47 H 0.00 0.07 6.94 -2.39 -0.02 0.05 16 48 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -72.18 387.13 3.98 -68.20 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.31 Total: 20.87 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 6.67 Total: 20.21 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -4.97 Total: -136.05 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.18 3.98 -68.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045444292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.170 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds