Wall clock time and date at job start Tue Mar 31 2020 20:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 C 1.53000 * 109.47380 * 240.00248 * 2 1 3 5 5 N 1.46495 * 109.47131 * 119.99930 * 2 1 3 6 6 N 1.28721 * 125.32166 * 359.97438 * 5 2 1 7 7 N 1.28978 * 108.98860 * 180.02562 * 6 5 2 8 8 C 1.34184 * 107.25446 * 0.02562 * 7 6 5 9 9 C 1.48007 * 126.70293 * 179.97438 * 8 7 6 10 10 O 1.21536 * 120.00629 * 180.02562 * 9 8 7 11 11 N 1.34784 * 119.99751 * 0.02562 * 9 8 7 12 12 C 1.46496 * 119.99710 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49423 * 325.03953 * 12 11 9 14 14 C 1.52572 * 109.48536 * 204.99997 * 12 11 9 15 15 C 1.47094 * 114.32512 * 155.02386 * 14 12 11 16 16 C 1.54860 * 110.32475 * 62.79848 * 15 14 12 17 17 N 1.44578 * 109.58192 * 288.74802 * 16 15 14 18 18 C 1.36932 * 118.64100 * 270.71494 * 17 16 15 19 19 H 1.08002 * 120.00236 * 139.22301 * 18 17 16 20 20 C 1.38811 * 120.00278 * 319.21880 * 18 17 16 21 21 N 1.31612 * 120.00423 * 156.28159 * 20 18 17 22 22 Si 1.86801 * 119.99709 * 336.28658 * 20 18 17 23 23 H 1.48495 * 109.47072 * 95.53160 * 22 20 18 24 24 H 1.48500 * 109.47205 * 215.53150 * 22 20 18 25 25 H 1.48505 * 109.47262 * 335.52860 * 22 20 18 26 26 C 1.47576 * 122.73249 * 90.75682 * 17 16 15 27 27 C 1.50877 * 109.49256 * 85.11458 * 12 11 9 28 28 N 1.28876 * 125.32118 * 180.28976 * 5 2 1 29 29 H 1.09001 * 109.47445 * 300.00071 * 1 2 3 30 30 H 1.09004 * 109.47244 * 60.00330 * 1 2 3 31 31 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47192 * 300.00299 * 3 2 1 34 34 H 1.09001 * 109.47055 * 59.99690 * 3 2 1 35 35 H 1.08995 * 109.46744 * 299.99872 * 4 2 1 36 36 H 1.09001 * 109.46916 * 59.99667 * 4 2 1 37 37 H 1.08994 * 109.47331 * 179.97438 * 4 2 1 38 38 H 0.96995 * 119.99500 * 359.97438 * 11 9 8 39 39 H 1.09004 * 108.51550 * 33.76718 * 14 12 11 40 40 H 1.09000 * 108.51307 * 276.27363 * 14 12 11 41 41 H 1.09007 * 109.32561 * 302.53758 * 15 14 12 42 42 H 1.09002 * 109.19157 * 182.97655 * 15 14 12 43 43 H 1.09007 * 109.44498 * 48.77326 * 16 15 14 44 44 H 1.09001 * 109.45158 * 168.71678 * 16 15 14 45 45 H 0.96998 * 120.00702 * 180.02562 * 21 20 18 46 46 H 1.08998 * 108.94894 * 197.15819 * 26 17 16 47 47 H 1.09005 * 108.89774 * 78.46616 * 26 17 16 48 48 H 1.08996 * 109.36692 * 332.04143 * 27 12 11 49 49 H 1.09008 * 109.36494 * 91.78282 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 1.2762 -1.2160 2.1072 7 7 2.0307 -1.7387 3.0133 8 6 3.3029 -1.5250 2.6438 9 6 4.5190 -1.9459 3.3749 10 8 5.6183 -1.6861 2.9263 11 7 4.4074 -2.6173 4.5382 12 6 5.6111 -3.0334 5.2621 13 1 6.3907 -3.3004 4.5485 14 6 5.2870 -4.2405 6.1371 15 6 6.4456 -5.0917 6.4484 16 6 7.4934 -4.2963 7.2654 17 7 8.1328 -3.3194 6.4128 18 6 9.2557 -3.6870 5.7207 19 1 9.3903 -3.3638 4.6990 20 6 10.2211 -4.4749 6.3322 21 7 11.0334 -5.2073 5.6002 22 14 10.3672 -4.4958 8.1944 23 1 9.6057 -5.6490 8.7377 24 1 11.7965 -4.6218 8.5774 25 1 9.8158 -3.2331 8.7485 26 6 7.6260 -1.9420 6.2579 27 6 6.0922 -1.8991 6.1330 28 7 3.2581 -0.8620 1.5036 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6768 -1.7488 -1.2492 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 3.5301 -2.8243 4.8964 39 1 4.5390 -4.8472 5.6267 40 1 4.8580 -3.8840 7.0736 41 1 6.8991 -5.4375 5.5194 42 1 6.1124 -5.9519 7.0291 43 1 6.9984 -3.7875 8.0927 44 1 8.2442 -4.9821 7.6582 45 1 11.7078 -5.7582 6.0275 46 1 8.0664 -1.5013 5.3635 47 1 7.9269 -1.3555 7.1260 48 1 5.7921 -0.9501 5.6888 49 1 5.6479 -1.9909 7.1242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052397791.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:56 Heat of formation + Delta-G solvation = 91.506236 kcal Electronic energy + Delta-G solvation = -29863.899897 eV Core-core repulsion = 25864.114106 eV Total energy + Delta-G solvation = -3999.785791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.62306 -41.22482 -39.40708 -38.61420 -36.53764 -34.75873 -34.40106 -33.61588 -33.52900 -32.14189 -28.68331 -28.55449 -28.09282 -26.76895 -25.65953 -25.56060 -24.74556 -22.29470 -21.86322 -21.64088 -21.00884 -19.10839 -18.57389 -18.56673 -17.80256 -17.62976 -17.14089 -16.57569 -16.01503 -15.83283 -15.28826 -15.27727 -15.13602 -15.11258 -14.85566 -14.62624 -14.55359 -14.07024 -13.76686 -13.56153 -13.48694 -13.31081 -13.29359 -13.23485 -12.88569 -12.85940 -12.65313 -12.42244 -12.38197 -12.31962 -12.13543 -12.12416 -11.96154 -11.77738 -11.61759 -11.50008 -11.45832 -11.39702 -11.30699 -10.57295 -10.28692 -8.64199 -8.17948 -5.57283 -0.18064 0.23401 0.62048 1.33309 1.44002 1.56555 1.65110 1.86734 2.44976 2.76437 2.93742 3.07847 3.40352 3.47080 3.56042 3.63333 3.73660 3.96711 4.00616 4.26212 4.29939 4.34438 4.36536 4.40256 4.51081 4.55557 4.57873 4.59041 4.70519 4.72219 4.72295 4.81762 4.88173 4.99367 5.01259 5.09680 5.12390 5.14009 5.16274 5.20184 5.21821 5.28998 5.35672 5.46126 5.60294 6.00728 6.21698 6.24610 6.89003 7.02340 7.09808 7.71292 8.06659 9.02497 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.002407 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.794265 B =11629.149904 C =12016.553480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.159 4.159 5 N -0.109 5.109 6 N -0.055 5.055 7 N -0.262 5.262 8 C 0.116 3.884 9 C 0.612 3.388 10 O -0.546 6.546 11 N -0.683 5.683 12 C 0.159 3.841 13 H 0.057 0.943 14 C -0.104 4.104 15 C -0.133 4.133 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.262 4.262 19 H 0.023 0.977 20 C -0.019 4.019 21 N -0.950 5.950 22 Si 0.949 3.051 23 H -0.267 1.267 24 H -0.310 1.310 25 H -0.259 1.259 26 C 0.149 3.851 27 C -0.128 4.128 28 N -0.262 5.262 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.059 0.941 38 H 0.421 0.579 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.031 0.969 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.263 0.737 46 H 0.030 0.970 47 H 0.033 0.967 48 H 0.066 0.934 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.555 11.328 -8.380 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.081 3.919 3 C -0.216 4.216 4 C -0.217 4.217 5 N -0.026 5.026 6 N -0.047 5.047 7 N -0.136 5.136 8 C -0.168 4.168 9 C 0.392 3.608 10 O -0.420 6.420 11 N -0.335 5.335 12 C 0.055 3.945 13 H 0.075 0.925 14 C -0.142 4.142 15 C -0.173 4.173 16 C 0.010 3.990 17 N -0.336 5.336 18 C -0.392 4.392 19 H 0.041 0.959 20 C -0.215 4.215 21 N -0.593 5.593 22 Si 0.777 3.223 23 H -0.193 1.193 24 H -0.238 1.238 25 H -0.183 1.183 26 C 0.025 3.975 27 C -0.168 4.168 28 N -0.116 5.116 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.259 0.741 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.050 0.950 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.084 0.916 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.282 11.515 -8.809 31.782 hybrid contribution 1.269 -0.462 0.616 1.485 sum -27.013 11.053 -8.193 30.315 Atomic orbital electron populations 1.22179 0.87586 1.04860 1.06014 1.22228 0.98254 0.93298 0.78155 1.22314 1.02395 0.91131 1.05791 1.22317 1.02377 1.01234 0.95786 1.51321 0.99931 1.32944 1.18428 1.78769 1.21417 1.08924 0.95601 1.76071 0.99465 1.18068 1.20040 1.25107 0.94423 1.03205 0.94021 1.16342 0.84457 0.78837 0.81180 1.90899 1.26995 1.55949 1.68150 1.45787 1.11603 1.55310 1.20809 1.20422 0.85116 0.95158 0.93756 0.92469 1.20536 0.98461 0.95025 1.00154 1.21213 0.96532 0.98910 1.00641 1.21295 0.93997 0.91037 0.92664 1.43956 1.28258 1.07888 1.53464 1.18593 0.97217 1.29923 0.93516 0.95917 1.26174 0.95639 0.97452 1.02242 1.70041 1.23509 1.28222 1.37556 0.85758 0.75402 0.79167 0.81964 1.19324 1.23844 1.18301 1.21226 0.92795 0.85088 0.98428 1.22137 0.95895 0.98018 1.00706 1.74995 1.04183 1.17225 1.15150 0.90940 0.85445 0.91058 0.92144 0.85202 0.91751 0.91892 0.85169 0.92190 0.74135 0.90417 0.88873 0.94965 0.89628 0.91102 0.95147 0.92823 0.95167 0.94922 0.91554 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 7.90 71.98 0.57 -0.29 16 2 C 0.16 1.80 1.30 3.61 0.00 1.80 16 3 C -0.16 -1.39 8.66 71.98 0.62 -0.77 16 4 C -0.16 -1.47 8.66 71.98 0.62 -0.85 16 5 N -0.11 -2.32 3.72 -152.26 -0.57 -2.89 16 6 N -0.05 -1.27 12.21 37.02 0.45 -0.81 16 7 N -0.26 -6.92 12.26 -52.37 -0.64 -7.56 16 8 C 0.12 3.49 8.14 137.15 1.12 4.60 16 9 C 0.61 20.84 7.66 86.83 0.66 21.50 16 10 O -0.55 -23.71 16.76 -3.83 -0.06 -23.78 16 11 N -0.68 -19.37 4.93 -449.23 -2.21 -21.59 16 12 C 0.16 5.24 2.06 44.16 0.09 5.33 16 13 H 0.06 2.54 6.92 -2.39 -0.02 2.52 16 14 C -0.10 -2.86 4.69 28.62 0.13 -2.72 16 15 C -0.13 -4.62 5.74 29.39 0.17 -4.45 16 16 C 0.14 5.50 4.52 87.37 0.39 5.90 16 17 N -0.61 -29.24 1.79 -698.43 -1.25 -30.49 16 18 C -0.26 -15.56 9.65 84.03 0.81 -14.75 16 19 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 20 C -0.02 -1.12 5.22 84.86 0.44 -0.67 16 21 N -0.95 -61.20 13.97 21.65 0.30 -60.90 16 22 Si 0.95 46.79 25.28 68.60 1.73 48.52 16 23 H -0.27 -12.22 6.70 99.48 0.67 -11.56 16 24 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 25 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 26 C 0.15 6.20 6.24 86.49 0.54 6.74 16 27 C -0.13 -4.10 5.39 30.22 0.16 -3.94 16 28 N -0.26 -7.42 11.85 -52.32 -0.62 -8.04 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.13 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.42 9.19 8.35 -92.71 -0.77 8.42 16 39 H 0.08 1.83 8.04 -2.38 -0.02 1.81 16 40 H 0.09 1.98 7.36 -2.39 -0.02 1.97 16 41 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.07 2.39 8.07 -2.38 -0.02 2.37 16 44 H 0.03 1.38 3.60 -2.39 -0.01 1.37 16 45 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 46 H 0.03 1.40 7.89 -2.39 -0.02 1.38 16 47 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.07 2.09 7.85 -2.39 -0.02 2.08 16 49 H 0.09 2.38 7.32 -2.38 -0.02 2.36 16 Total: -1.00 -81.49 388.95 3.62 -77.87 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.14 Total: 12.23 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 6.35 Total: 17.43 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -4.54 Total: -132.28 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.73 Total: 48.52 kcal Total: -81.49 3.62 -77.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052397791.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.376 kcal (2) G-P(sol) polarization free energy of solvation -81.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds