Wall clock time and date at job start Tue Mar 31 2020 20:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47647 * 2 1 4 4 C 1.53006 * 109.46824 * 239.99797 * 2 1 3 5 5 N 1.46502 * 109.47015 * 120.00604 * 2 1 3 6 6 N 1.28714 * 125.32311 * 359.96624 * 5 2 1 7 7 N 1.28977 * 108.99163 * 180.02562 * 6 5 2 8 8 C 1.34188 * 107.25134 * 0.02562 * 7 6 5 9 9 C 1.48007 * 126.69788 * 179.97438 * 8 7 6 10 10 O 1.21538 * 119.99750 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00159 * 0.03303 * 9 8 7 12 12 C 1.46504 * 120.00161 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.20126 * 35.63681 * 12 11 9 14 14 C 1.50130 * 109.20813 * 154.99656 * 12 11 9 15 15 C 1.52522 * 105.41039 * 218.02877 * 14 12 11 16 16 C 1.46238 * 114.27766 * 270.59178 * 15 14 12 17 17 N 1.50166 * 107.53359 * 58.41072 * 16 15 14 18 18 C 1.36940 * 120.53611 * 109.56355 * 17 16 15 19 19 H 1.08001 * 119.99398 * 156.68323 * 18 17 16 20 20 C 1.38807 * 120.00049 * 336.41201 * 18 17 16 21 21 N 1.31620 * 119.99943 * 340.39492 * 20 18 17 22 22 Si 1.86797 * 119.99835 * 160.39511 * 20 18 17 23 23 H 1.48505 * 109.47256 * 94.22662 * 22 20 18 24 24 H 1.48502 * 109.47223 * 214.22529 * 22 20 18 25 25 H 1.48499 * 109.47414 * 334.22807 * 22 20 18 26 26 C 1.43436 * 118.92739 * 289.84643 * 17 16 15 27 27 C 1.54395 * 116.39341 * 91.44835 * 26 17 16 28 28 N 1.28876 * 125.31847 * 180.29346 * 5 2 1 29 29 H 1.09008 * 109.46782 * 300.00020 * 1 2 3 30 30 H 1.08995 * 109.47110 * 59.99570 * 1 2 3 31 31 H 1.08991 * 109.47496 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47281 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47216 * 300.00365 * 3 2 1 34 34 H 1.09010 * 109.46609 * 59.99846 * 3 2 1 35 35 H 1.08991 * 109.47054 * 300.00234 * 4 2 1 36 36 H 1.09002 * 109.46414 * 60.00478 * 4 2 1 37 37 H 1.09002 * 109.46595 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99973 * 359.97438 * 11 9 8 39 39 H 1.09003 * 110.24899 * 99.05506 * 14 12 11 40 40 H 1.09000 * 110.24854 * 336.99723 * 14 12 11 41 41 H 1.09004 * 108.52265 * 149.35633 * 15 14 12 42 42 H 1.09000 * 108.40594 * 31.74927 * 15 14 12 43 43 H 1.09000 * 109.84503 * 298.90559 * 16 15 14 44 44 H 1.09003 * 109.84756 * 177.91767 * 16 15 14 45 45 H 0.97002 * 120.00237 * 180.02562 * 21 20 18 46 46 H 1.09004 * 108.15830 * 213.03325 * 26 17 16 47 47 H 1.09008 * 108.15507 * 329.59232 * 26 17 16 48 48 H 1.09005 * 109.44648 * 198.44079 * 27 26 17 49 49 H 1.09007 * 109.34719 * 78.81081 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2763 -1.2162 2.1072 7 7 2.0307 -1.7390 3.0132 8 6 3.3029 -1.5254 2.6436 9 6 4.5190 -1.9465 3.3746 10 8 5.6182 -1.6868 2.9259 11 7 4.4074 -2.6181 4.5378 12 6 5.6111 -3.0354 5.2611 13 1 6.3824 -2.2744 5.1428 14 6 5.2844 -3.1851 6.7188 15 6 6.5098 -2.6664 7.4641 16 6 7.5230 -3.6849 7.7375 17 7 7.9502 -4.2633 6.4192 18 6 9.1962 -4.0008 5.9152 19 1 9.6434 -4.6769 5.2016 20 6 9.8819 -2.8629 6.3173 21 7 9.2274 -1.8562 6.8563 22 14 11.7336 -2.7604 6.0935 23 1 12.0401 -2.0804 4.8093 24 1 12.3259 -1.9890 7.2157 25 1 12.3069 -4.1301 6.0774 26 6 7.0299 -5.0902 5.6935 27 6 6.1217 -4.3730 4.6715 28 7 3.2581 -0.8621 1.5036 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 3.5300 -2.8251 4.8960 39 1 5.1114 -4.2338 6.9608 40 1 4.4081 -2.5885 6.9722 41 1 6.1833 -2.2396 8.4125 42 1 6.9657 -1.8756 6.8685 43 1 7.0998 -4.4687 8.3657 44 1 8.3788 -3.2308 8.2371 45 1 9.7065 -1.0608 7.1369 46 1 7.6029 -5.8478 5.1587 47 1 6.3913 -5.6011 6.4142 48 1 5.2706 -5.0106 4.4321 49 1 6.6885 -4.1740 3.7619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052397813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:00 Heat of formation + Delta-G solvation = 98.740711 kcal Electronic energy + Delta-G solvation = -30048.145488 eV Core-core repulsion = 26048.673407 eV Total energy + Delta-G solvation = -3999.472081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.62527 -41.13931 -39.35835 -38.61599 -36.39723 -34.73414 -34.22030 -33.48210 -33.31213 -31.62921 -28.66639 -28.56128 -28.08885 -26.64229 -25.65946 -25.61077 -24.42555 -22.34776 -21.85494 -21.46956 -20.79539 -19.06868 -18.59363 -18.56648 -17.74080 -17.25085 -16.92734 -16.26887 -16.02599 -15.62901 -15.47875 -15.29109 -15.15106 -15.11051 -14.97136 -14.14431 -14.08878 -13.90399 -13.50685 -13.50072 -13.31028 -13.23884 -13.21085 -13.13884 -12.86599 -12.67897 -12.65847 -12.39410 -12.36435 -12.20413 -12.13312 -12.12911 -11.97526 -11.78754 -11.62570 -11.49293 -11.33329 -11.17557 -11.09667 -10.43061 -10.11092 -8.61172 -7.80183 -5.19968 -0.18165 0.23539 0.62743 1.46346 1.48906 1.57486 1.70128 1.88313 2.56456 2.78070 2.95596 3.33022 3.46566 3.55628 3.63001 3.64855 3.94369 4.01619 4.11315 4.28088 4.33534 4.39914 4.49833 4.50350 4.57740 4.58405 4.66088 4.71714 4.71794 4.74129 4.87247 4.92381 5.00525 5.05326 5.08947 5.16086 5.19468 5.21497 5.24682 5.31669 5.38035 5.51500 5.59869 5.70604 5.79956 6.22981 6.29216 6.46246 6.92161 7.02968 7.22610 7.96146 8.43937 9.23900 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.002633 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.226842 B =10632.186482 C =11341.059855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.158 3.842 3 C -0.159 4.159 4 C -0.158 4.158 5 N -0.109 5.109 6 N -0.054 5.054 7 N -0.262 5.262 8 C 0.117 3.883 9 C 0.608 3.392 10 O -0.551 6.551 11 N -0.685 5.685 12 C 0.168 3.832 13 H 0.051 0.949 14 C -0.107 4.107 15 C -0.124 4.124 16 C 0.167 3.833 17 N -0.602 5.602 18 C -0.260 4.260 19 H 0.058 0.942 20 C -0.044 4.044 21 N -0.915 5.915 22 Si 0.954 3.046 23 H -0.297 1.297 24 H -0.290 1.290 25 H -0.273 1.273 26 C 0.157 3.843 27 C -0.143 4.143 28 N -0.262 5.262 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.058 0.942 38 H 0.419 0.581 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.245 0.755 46 H 0.029 0.971 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.131 3.424 -12.455 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.080 3.920 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.047 5.047 7 N -0.137 5.137 8 C -0.167 4.167 9 C 0.388 3.612 10 O -0.425 6.425 11 N -0.337 5.337 12 C 0.065 3.935 13 H 0.069 0.931 14 C -0.145 4.145 15 C -0.163 4.163 16 C 0.044 3.956 17 N -0.324 5.324 18 C -0.390 4.390 19 H 0.076 0.924 20 C -0.240 4.240 21 N -0.561 5.561 22 Si 0.783 3.217 23 H -0.225 1.225 24 H -0.216 1.216 25 H -0.198 1.198 26 C 0.028 3.972 27 C -0.185 4.185 28 N -0.116 5.116 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.149 0.851 37 H 0.078 0.922 38 H 0.257 0.743 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.080 0.920 48 H 0.100 0.900 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -22.858 3.805 -12.805 26.475 hybrid contribution 1.662 0.323 0.022 1.693 sum -21.197 4.128 -12.783 25.095 Atomic orbital electron populations 1.22178 0.87505 1.04916 1.05999 1.22248 0.98316 0.93240 0.78195 1.22317 1.02342 0.91264 1.05770 1.22315 1.02342 1.01275 0.95690 1.51333 0.99909 1.32950 1.18440 1.78750 1.21393 1.08921 0.95590 1.76071 0.99439 1.18165 1.19996 1.25109 0.94394 1.03148 0.94000 1.16447 0.84489 0.78736 0.81542 1.90884 1.27190 1.56592 1.67825 1.46061 1.11728 1.54974 1.20916 1.21085 0.84394 0.96421 0.91614 0.93121 1.21300 0.98384 1.03047 0.91787 1.20756 0.95108 1.00800 0.99674 1.20128 0.96335 0.93269 0.85874 1.44473 1.11588 1.58371 1.17966 1.19367 0.92891 1.03251 1.23493 0.92425 1.25513 1.01542 0.94743 1.02192 1.70130 1.34252 1.04589 1.47082 0.85473 0.82340 0.77389 0.76453 1.22461 1.21639 1.19813 1.20389 0.91355 0.92165 0.93298 1.23142 0.99637 0.96402 0.99310 1.74991 1.04207 1.17187 1.15221 0.91053 0.85353 0.90949 0.92265 0.85077 0.91889 0.91767 0.85091 0.92247 0.74308 0.89270 0.89590 0.93324 0.92136 0.94657 0.92576 0.94525 0.95296 0.91997 0.89972 0.95916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 7.90 71.98 0.57 -0.47 16 2 C 0.16 2.03 1.30 3.61 0.00 2.04 16 3 C -0.16 -1.69 8.66 71.98 0.62 -1.07 16 4 C -0.16 -1.62 8.66 71.98 0.62 -1.00 16 5 N -0.11 -2.55 3.72 -152.25 -0.57 -3.12 16 6 N -0.05 -1.37 12.21 37.02 0.45 -0.92 16 7 N -0.26 -7.65 12.26 -52.36 -0.64 -8.29 16 8 C 0.12 3.90 8.14 137.15 1.12 5.02 16 9 C 0.61 23.46 7.79 86.84 0.68 24.13 16 10 O -0.55 -26.66 16.76 -3.84 -0.06 -26.72 16 11 N -0.68 -22.90 4.97 -446.66 -2.22 -25.12 16 12 C 0.17 6.55 2.22 44.69 0.10 6.65 16 13 H 0.05 2.62 6.26 -2.39 -0.01 2.60 16 14 C -0.11 -3.58 5.34 29.51 0.16 -3.42 16 15 C -0.12 -5.19 5.02 28.35 0.14 -5.04 16 16 C 0.17 7.61 5.25 83.58 0.44 8.05 16 17 N -0.60 -29.65 2.61 -708.86 -1.85 -31.50 16 18 C -0.26 -14.56 9.62 84.03 0.81 -13.75 16 19 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16 20 C -0.04 -2.49 4.91 84.86 0.42 -2.07 16 21 N -0.91 -53.23 9.43 21.65 0.20 -53.03 16 22 Si 0.95 46.59 29.60 68.60 2.03 48.62 16 23 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 26 C 0.16 6.43 5.13 87.42 0.45 6.87 16 27 C -0.14 -5.59 5.97 31.70 0.19 -5.40 16 28 N -0.26 -8.12 11.85 -52.32 -0.62 -8.74 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.42 11.10 8.23 -92.71 -0.76 10.34 16 39 H 0.09 2.62 6.28 -2.39 -0.01 2.61 16 40 H 0.09 2.39 7.85 -2.39 -0.02 2.37 16 41 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.06 3.12 5.26 -2.39 -0.01 3.11 16 43 H 0.04 1.40 8.13 -2.39 -0.02 1.38 16 44 H 0.06 2.94 6.08 -2.39 -0.01 2.92 16 45 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.03 1.21 7.99 -2.39 -0.02 1.19 16 47 H 0.06 2.15 6.89 -2.38 -0.02 2.14 16 48 H 0.08 2.64 8.13 -2.38 -0.02 2.62 16 49 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -75.45 387.48 3.24 -72.21 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.20 Total: 16.07 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 6.31 Total: 20.54 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -5.24 Total: -130.71 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.06 Total: -26.72 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -75.45 3.24 -72.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052397813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.951 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds