Wall clock time and date at job start Tue Mar 31 2020 19:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00035 * 2 1 4 4 C 1.53002 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47287 * 180.02562 * 4 3 2 6 6 N 1.28447 * 125.18744 * 271.96560 * 5 4 3 7 7 C 1.30869 * 110.92493 * 179.87905 * 6 5 4 8 8 C 1.39675 * 107.86208 * 0.38164 * 7 6 5 9 9 C 1.36600 * 125.19509 * 92.27002 * 5 4 3 10 10 C 1.47167 * 126.88014 * 359.97438 * 9 5 4 11 11 O 1.21627 * 119.99952 * 354.82135 * 10 9 5 12 12 N 1.34773 * 120.00039 * 174.81576 * 10 9 5 13 13 C 1.46502 * 120.00224 * 184.92960 * 12 10 9 14 14 H 1.09003 * 108.44673 * 327.31727 * 13 12 10 15 15 C 1.52568 * 108.51535 * 209.76680 * 13 12 10 16 16 C 1.50879 * 109.35643 * 153.73409 * 15 13 12 17 17 C 1.53942 * 110.09492 * 91.88833 * 16 15 13 18 18 N 1.47601 * 112.14460 * 319.43237 * 17 16 15 19 19 C 1.36935 * 118.64499 * 137.84703 * 18 17 16 20 20 H 1.08005 * 119.99870 * 209.70698 * 19 18 17 21 21 C 1.38809 * 120.00332 * 29.70469 * 19 18 17 22 22 N 1.31626 * 119.99654 * 23.42603 * 21 19 18 23 23 Si 1.86797 * 120.00335 * 203.42467 * 21 19 18 24 24 H 1.48501 * 109.47201 * 94.96203 * 23 21 19 25 25 H 1.48502 * 109.47306 * 214.95858 * 23 21 19 26 26 H 1.48503 * 109.47221 * 334.96204 * 23 21 19 27 27 C 1.44584 * 122.71201 * 317.87094 * 18 17 16 28 28 C 1.47100 * 108.51091 * 84.99786 * 13 12 10 29 29 H 1.09003 * 109.47008 * 299.99565 * 1 2 3 30 30 H 1.08995 * 109.47402 * 59.99979 * 1 2 3 31 31 H 1.09006 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46980 * 60.00013 * 3 2 1 33 33 H 1.09001 * 109.47007 * 300.00345 * 3 2 1 34 34 H 1.08998 * 109.46845 * 299.99981 * 4 3 2 35 35 H 1.09002 * 109.47090 * 60.00055 * 4 3 2 36 36 H 1.07999 * 126.06842 * 180.13572 * 7 6 5 37 37 H 1.07997 * 127.32403 * 179.80001 * 8 7 6 38 38 H 0.97000 * 120.00170 * 4.92959 * 12 10 9 39 39 H 1.08995 * 109.48702 * 273.70132 * 15 13 12 40 40 H 1.09003 * 109.48871 * 33.77089 * 15 13 12 41 41 H 1.09004 * 109.36783 * 331.69484 * 16 15 13 42 42 H 1.09003 * 109.26264 * 212.01451 * 16 15 13 43 43 H 1.09002 * 108.94584 * 198.74486 * 17 16 15 44 44 H 1.09001 * 108.95162 * 80.12276 * 17 16 15 45 45 H 0.96998 * 119.99527 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.44749 * 330.68406 * 27 18 17 47 47 H 1.08996 * 109.44733 * 210.76462 * 27 18 17 48 48 H 1.08992 * 109.32744 * 304.32302 * 28 13 12 49 49 H 1.09005 * 109.32135 * 63.79997 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 7 4.3991 3.2144 -1.0488 7 6 4.9228 4.3695 -0.7260 8 6 5.0091 4.4264 0.6669 9 6 4.4923 3.2235 1.1157 10 6 4.3588 2.7865 2.5146 11 8 3.7988 1.7383 2.7735 12 7 4.8571 3.5478 3.5089 13 6 4.8209 3.0632 4.8910 14 1 3.9275 2.4520 5.0189 15 6 4.7187 4.2663 5.8236 16 6 4.0520 3.8464 7.1103 17 6 5.1128 3.4175 8.1402 18 7 6.1980 2.6282 7.5253 19 6 7.4894 2.8812 7.9039 20 1 8.2982 2.7188 7.2067 21 6 7.7591 3.3465 9.1836 22 7 6.9059 3.1194 10.1598 23 14 9.3329 4.2947 9.5203 24 1 9.0617 5.7520 9.4299 25 1 9.8268 3.9668 10.8819 26 1 10.3613 3.9194 8.5169 27 6 5.9537 1.5992 6.5395 28 6 6.0022 2.2173 5.1204 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8574 0.6436 0.8891 35 1 3.8567 0.6439 -0.8909 36 1 5.2366 5.1401 -1.4145 37 1 5.3963 5.2370 1.2664 38 1 5.2398 4.4165 3.3094 39 1 5.7177 4.6457 6.0385 40 1 4.1276 5.0477 5.3459 41 1 3.3805 3.0106 6.9135 42 1 3.4794 4.6840 7.5087 43 1 4.6331 2.8175 8.9135 44 1 5.5402 4.3085 8.6003 45 1 7.0946 3.4443 11.0541 46 1 4.9713 1.1589 6.7102 47 1 6.7173 0.8261 6.6250 48 1 6.0232 1.4183 4.3794 49 1 6.9037 2.8220 5.0209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052477588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:16 Heat of formation + Delta-G solvation = 21.817773 kcal Electronic energy + Delta-G solvation = -29859.426158 eV Core-core repulsion = 25824.325697 eV Total energy + Delta-G solvation = -4035.100461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.76535 -39.78658 -38.28368 -37.65138 -35.00837 -34.05915 -32.67325 -31.72754 -31.17398 -29.73054 -29.55613 -26.63352 -26.14915 -24.50480 -23.88493 -23.49625 -22.67384 -21.51742 -20.31899 -19.85384 -19.28724 -18.10638 -16.97299 -16.71197 -16.39079 -16.31239 -16.05825 -15.55260 -15.12637 -15.03192 -14.72332 -14.43745 -14.12247 -13.95564 -13.78081 -13.61646 -13.41904 -13.10431 -12.85903 -12.57133 -12.40357 -12.02937 -11.83915 -11.65572 -11.48363 -11.31587 -11.04154 -10.85256 -10.78904 -10.50593 -10.31285 -10.19858 -10.07011 -10.02028 -9.82398 -9.80251 -9.60292 -9.46889 -9.29428 -8.90177 -8.40792 -6.65868 -5.81493 -3.24541 1.07946 2.01182 2.39053 3.04853 3.21248 3.35649 3.44497 3.45364 3.64344 4.26737 4.49064 4.49693 4.57508 4.70956 4.89915 4.95315 5.01196 5.04751 5.10839 5.26990 5.28713 5.34205 5.37923 5.41378 5.46336 5.54497 5.57331 5.66293 5.96239 6.00054 6.12277 6.22383 6.27170 6.41099 6.43899 6.45034 6.57926 6.68893 6.71673 6.73226 6.79098 6.87785 7.01688 7.30492 7.48171 7.56962 7.82758 7.84258 8.13938 8.46758 9.21316 9.88807 10.36943 11.24976 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.002632 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.413100 B =10635.137110 C =11530.558953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.057 3.943 4 C 0.120 3.880 5 N -0.257 5.257 6 N -0.280 5.280 7 C 0.000 4.000 8 C -0.190 4.190 9 C -0.029 4.029 10 C 0.584 3.416 11 O -0.539 6.539 12 N -0.709 5.709 13 C 0.162 3.838 14 H 0.079 0.921 15 C -0.112 4.112 16 C -0.139 4.139 17 C 0.176 3.824 18 N -0.587 5.587 19 C -0.266 4.266 20 H 0.063 0.937 21 C 0.012 3.988 22 N -0.892 5.892 23 Si 0.892 3.108 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.163 3.837 28 C -0.155 4.155 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.399 0.601 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.027 0.973 44 H 0.062 0.938 45 H 0.253 0.747 46 H 0.033 0.967 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 2.066 -20.138 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C -0.021 4.021 4 C -0.001 4.001 5 N -0.045 5.045 6 N -0.112 5.112 7 C -0.177 4.177 8 C -0.219 4.219 9 C -0.158 4.158 10 C 0.369 3.631 11 O -0.417 6.417 12 N -0.359 5.359 13 C 0.060 3.940 14 H 0.097 0.903 15 C -0.150 4.150 16 C -0.178 4.178 17 C 0.051 3.949 18 N -0.308 5.308 19 C -0.396 4.396 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.203 1.203 27 C 0.034 3.966 28 C -0.196 4.196 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.204 0.796 37 H 0.180 0.820 38 H 0.233 0.767 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.500 0.343 -20.638 23.158 hybrid contribution 1.078 1.836 0.732 2.252 sum -9.422 2.179 -19.906 22.131 Atomic orbital electron populations 1.22780 0.80085 1.03138 1.00224 1.87797 1.20414 1.26492 1.95523 1.22607 0.92464 0.85735 1.01297 1.21840 0.92600 0.78369 1.07272 1.45487 1.42579 1.14511 1.01954 1.73221 1.17961 1.06288 1.13731 1.23594 1.03541 0.95533 0.95013 1.22293 1.06288 0.97625 0.95668 1.21641 1.08953 0.95120 0.90036 1.16939 0.79000 0.84221 0.82971 1.90805 1.43272 1.23553 1.84050 1.46226 1.60778 1.21120 1.07733 1.20139 1.00285 0.96006 0.77574 0.90339 1.21257 1.02677 0.95742 0.95351 1.21938 0.99271 1.00033 0.96569 1.20947 0.87206 0.95487 0.91252 1.43630 1.03651 1.37555 1.45972 1.19118 0.84429 1.41254 0.94768 0.91882 1.25030 0.97351 1.01342 0.95132 1.70148 1.37622 1.45765 0.99954 0.86438 0.83591 0.80473 0.77293 1.21475 1.21890 1.20330 1.20562 0.98516 0.90678 0.86809 1.21887 0.97624 0.99079 1.01044 0.93682 0.93981 0.89107 0.92181 0.92677 0.85496 0.87595 0.79573 0.82037 0.76661 0.89900 0.92977 0.93154 0.92413 0.95490 0.91961 0.93695 0.94819 0.93136 0.93003 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.30 10.70 -35.23 -0.38 -4.68 16 3 C 0.06 0.62 6.26 37.16 0.23 0.85 16 4 C 0.12 1.36 6.18 -4.04 -0.02 1.34 16 5 N -0.26 -3.16 3.35 -57.14 -0.19 -3.35 16 6 N -0.28 -3.34 11.90 30.59 0.36 -2.97 16 7 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -1.88 10.50 -38.99 -0.41 -2.29 16 9 C -0.03 -0.36 6.96 -82.06 -0.57 -0.93 16 10 C 0.58 8.27 7.63 -12.64 -0.10 8.17 16 11 O -0.54 -9.08 14.27 5.25 0.07 -9.00 16 12 N -0.71 -9.26 4.87 -57.97 -0.28 -9.55 16 13 C 0.16 2.54 2.00 -70.98 -0.14 2.40 16 14 H 0.08 1.36 6.58 -51.93 -0.34 1.01 16 15 C -0.11 -1.76 5.00 -28.02 -0.14 -1.90 16 16 C -0.14 -2.41 5.71 -27.30 -0.16 -2.57 16 17 C 0.18 3.95 4.74 -2.95 -0.01 3.94 16 18 N -0.59 -13.84 2.25 -172.09 -0.39 -14.23 16 19 C -0.27 -6.99 9.33 -15.06 -0.14 -7.13 16 20 H 0.06 1.66 7.93 -52.48 -0.42 1.24 16 21 C 0.01 0.31 4.63 -17.43 -0.08 0.23 16 22 N -0.89 -25.32 11.81 55.49 0.66 -24.66 16 23 Si 0.89 21.08 29.61 -169.99 -5.03 16.04 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.16 3.36 5.65 -4.09 -0.02 3.34 16 28 C -0.15 -2.72 5.20 -28.58 -0.15 -2.87 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.13 1.63 6.30 -51.93 -0.33 1.30 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.19 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.16 1.14 7.58 -52.49 -0.40 0.74 16 38 H 0.40 4.19 7.64 -40.82 -0.31 3.88 16 39 H 0.08 1.47 7.48 -51.93 -0.39 1.08 16 40 H 0.05 0.69 8.05 -51.93 -0.42 0.27 16 41 H 0.05 0.86 7.31 -51.93 -0.38 0.48 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 44 H 0.06 1.54 6.79 -51.93 -0.35 1.19 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 47 H 0.05 1.08 7.99 -51.93 -0.41 0.66 16 48 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -31.33 392.23 -8.02 -39.35 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.94 Total: 3.38 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.81 Total: 3.75 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.16 Total: -54.76 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.30 Total: -13.68 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.33 -8.02 -39.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052477588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.172 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds