Wall clock time and date at job start Tue Mar 31 2020 19:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00035 * 2 1 4 4 C 1.53002 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47287 * 180.02562 * 4 3 2 6 6 N 1.28447 * 125.18744 * 271.96560 * 5 4 3 7 7 C 1.30869 * 110.92493 * 179.87905 * 6 5 4 8 8 C 1.39675 * 107.86208 * 0.38164 * 7 6 5 9 9 C 1.36600 * 125.19509 * 92.27002 * 5 4 3 10 10 C 1.47167 * 126.88014 * 359.97438 * 9 5 4 11 11 O 1.21627 * 119.99952 * 354.82135 * 10 9 5 12 12 N 1.34773 * 120.00039 * 174.81576 * 10 9 5 13 13 C 1.46502 * 120.00224 * 184.92960 * 12 10 9 14 14 H 1.09003 * 108.44673 * 327.31727 * 13 12 10 15 15 C 1.52568 * 108.51535 * 209.76680 * 13 12 10 16 16 C 1.50879 * 109.35643 * 153.73409 * 15 13 12 17 17 C 1.53942 * 110.09492 * 91.88833 * 16 15 13 18 18 N 1.47601 * 112.14460 * 319.43237 * 17 16 15 19 19 C 1.36935 * 118.64499 * 137.84703 * 18 17 16 20 20 H 1.08005 * 119.99870 * 209.70698 * 19 18 17 21 21 C 1.38809 * 120.00332 * 29.70469 * 19 18 17 22 22 N 1.31626 * 119.99654 * 23.42603 * 21 19 18 23 23 Si 1.86797 * 120.00335 * 203.42467 * 21 19 18 24 24 H 1.48501 * 109.47201 * 94.96203 * 23 21 19 25 25 H 1.48502 * 109.47306 * 214.95858 * 23 21 19 26 26 H 1.48503 * 109.47221 * 334.96204 * 23 21 19 27 27 C 1.44584 * 122.71201 * 317.87094 * 18 17 16 28 28 C 1.47100 * 108.51091 * 84.99786 * 13 12 10 29 29 H 1.09003 * 109.47008 * 299.99565 * 1 2 3 30 30 H 1.08995 * 109.47402 * 59.99979 * 1 2 3 31 31 H 1.09006 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46980 * 60.00013 * 3 2 1 33 33 H 1.09001 * 109.47007 * 300.00345 * 3 2 1 34 34 H 1.08998 * 109.46845 * 299.99981 * 4 3 2 35 35 H 1.09002 * 109.47090 * 60.00055 * 4 3 2 36 36 H 1.07999 * 126.06842 * 180.13572 * 7 6 5 37 37 H 1.07997 * 127.32403 * 179.80001 * 8 7 6 38 38 H 0.97000 * 120.00170 * 4.92959 * 12 10 9 39 39 H 1.08995 * 109.48702 * 273.70132 * 15 13 12 40 40 H 1.09003 * 109.48871 * 33.77089 * 15 13 12 41 41 H 1.09004 * 109.36783 * 331.69484 * 16 15 13 42 42 H 1.09003 * 109.26264 * 212.01451 * 16 15 13 43 43 H 1.09002 * 108.94584 * 198.74486 * 17 16 15 44 44 H 1.09001 * 108.95162 * 80.12276 * 17 16 15 45 45 H 0.96998 * 119.99527 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.44749 * 330.68406 * 27 18 17 47 47 H 1.08996 * 109.44733 * 210.76462 * 27 18 17 48 48 H 1.08992 * 109.32744 * 304.32302 * 28 13 12 49 49 H 1.09005 * 109.32135 * 63.79997 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 7 4.3991 3.2144 -1.0488 7 6 4.9228 4.3695 -0.7260 8 6 5.0091 4.4264 0.6669 9 6 4.4923 3.2235 1.1157 10 6 4.3588 2.7865 2.5146 11 8 3.7988 1.7383 2.7735 12 7 4.8571 3.5478 3.5089 13 6 4.8209 3.0632 4.8910 14 1 3.9275 2.4520 5.0189 15 6 4.7187 4.2663 5.8236 16 6 4.0520 3.8464 7.1103 17 6 5.1128 3.4175 8.1402 18 7 6.1980 2.6282 7.5253 19 6 7.4894 2.8812 7.9039 20 1 8.2982 2.7188 7.2067 21 6 7.7591 3.3465 9.1836 22 7 6.9059 3.1194 10.1598 23 14 9.3329 4.2947 9.5203 24 1 9.0617 5.7520 9.4299 25 1 9.8268 3.9668 10.8819 26 1 10.3613 3.9194 8.5169 27 6 5.9537 1.5992 6.5395 28 6 6.0022 2.2173 5.1204 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8574 0.6436 0.8891 35 1 3.8567 0.6439 -0.8909 36 1 5.2366 5.1401 -1.4145 37 1 5.3963 5.2370 1.2664 38 1 5.2398 4.4165 3.3094 39 1 5.7177 4.6457 6.0385 40 1 4.1276 5.0477 5.3459 41 1 3.3805 3.0106 6.9135 42 1 3.4794 4.6840 7.5087 43 1 4.6331 2.8175 8.9135 44 1 5.5402 4.3085 8.6003 45 1 7.0946 3.4443 11.0541 46 1 4.9713 1.1589 6.7102 47 1 6.7173 0.8261 6.6250 48 1 6.0232 1.4183 4.3794 49 1 6.9037 2.8220 5.0209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052477588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:15 Heat of formation + Delta-G solvation = 1.395674 kcal Electronic energy + Delta-G solvation = -29860.311727 eV Core-core repulsion = 25824.325697 eV Total energy + Delta-G solvation = -4035.986030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.60021 -40.99887 -39.15722 -39.03367 -36.46520 -34.99286 -34.16076 -33.30839 -32.53278 -31.05365 -30.35694 -27.89457 -27.30559 -25.92904 -25.35004 -24.61312 -23.79514 -22.46829 -21.57911 -21.19904 -20.71657 -19.09429 -18.52948 -17.82758 -17.38243 -17.17869 -17.10384 -16.95154 -16.49904 -16.00112 -15.84446 -15.71686 -15.44583 -15.29069 -15.07500 -14.86494 -14.49944 -14.34516 -14.15916 -13.88699 -13.60654 -13.26440 -13.14685 -12.99761 -12.69280 -12.63913 -12.42469 -12.37773 -12.13889 -12.06127 -11.86602 -11.76845 -11.54542 -11.49142 -11.31558 -11.08508 -10.83749 -10.45520 -10.39937 -10.13818 -10.00466 -8.62745 -7.85044 -5.31228 0.16806 1.16845 1.47782 1.50423 1.58895 1.61809 2.03447 2.19086 2.54208 2.86733 3.25692 3.46006 3.52488 3.67020 3.76150 3.79346 3.94506 4.08370 4.11088 4.15245 4.31868 4.40401 4.41471 4.44373 4.45092 4.51231 4.54659 4.63127 4.70508 4.77201 4.78312 4.85762 4.94762 4.97787 5.12849 5.15781 5.23407 5.32642 5.47626 5.48343 5.52704 5.57627 5.65918 5.70476 5.76674 5.97342 6.42635 6.45270 7.00093 7.10937 7.20212 7.95416 8.37791 9.19041 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.002632 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.413100 B =10635.137110 C =11530.558953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.067 3.933 4 C 0.121 3.879 5 N -0.267 5.267 6 N -0.298 5.298 7 C 0.002 3.998 8 C -0.172 4.172 9 C -0.056 4.056 10 C 0.585 3.415 11 O -0.572 6.572 12 N -0.697 5.697 13 C 0.171 3.829 14 H 0.066 0.934 15 C -0.102 4.102 16 C -0.127 4.127 17 C 0.185 3.815 18 N -0.598 5.598 19 C -0.268 4.268 20 H 0.061 0.939 21 C -0.039 4.039 22 N -0.928 5.928 23 Si 0.956 3.044 24 H -0.283 1.283 25 H -0.299 1.299 26 H -0.269 1.269 27 C 0.160 3.840 28 C -0.135 4.135 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.223 0.777 37 H 0.193 0.807 38 H 0.415 0.585 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.080 0.920 43 H -0.007 1.007 44 H 0.035 0.965 45 H 0.249 0.751 46 H 0.035 0.965 47 H 0.036 0.964 48 H 0.052 0.948 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 4.072 -22.541 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.011 4.011 4 C 0.000 4.000 5 N -0.056 5.056 6 N -0.130 5.130 7 C -0.174 4.174 8 C -0.201 4.201 9 C -0.183 4.183 10 C 0.371 3.629 11 O -0.452 6.452 12 N -0.348 5.348 13 C 0.067 3.933 14 H 0.084 0.916 15 C -0.140 4.140 16 C -0.167 4.167 17 C 0.060 3.940 18 N -0.320 5.320 19 C -0.398 4.398 20 H 0.079 0.921 21 C -0.236 4.236 22 N -0.573 5.573 23 Si 0.784 3.216 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.194 1.194 27 C 0.032 3.968 28 C -0.176 4.176 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.239 0.761 37 H 0.211 0.789 38 H 0.252 0.748 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.011 0.989 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.486 2.366 -23.084 25.464 hybrid contribution 1.055 1.154 1.427 2.117 sum -9.431 3.520 -21.657 23.882 Atomic orbital electron populations 1.22993 0.78531 1.04439 1.00929 1.87770 1.22211 1.26735 1.95614 1.22479 0.92142 0.85613 1.00866 1.21776 0.92958 0.78494 1.06774 1.45539 1.43234 1.14740 1.02062 1.73225 1.18602 1.07273 1.13853 1.24264 1.02117 0.95337 0.95640 1.22739 1.04232 0.97037 0.96087 1.21563 1.11093 0.96509 0.89148 1.17176 0.78228 0.83646 0.83828 1.90796 1.44714 1.25034 1.84649 1.45924 1.60725 1.21693 1.06415 1.19810 0.98529 0.95762 0.79158 0.91606 1.21146 1.02066 0.96325 0.94462 1.21795 0.97774 1.01025 0.96062 1.20771 0.87667 0.93514 0.92051 1.43814 1.03225 1.38557 1.46369 1.19368 0.85574 1.40275 0.94599 0.92095 1.25726 1.00351 1.02526 0.95013 1.70279 1.39602 1.47276 1.00098 0.85439 0.80352 0.79139 0.76649 1.20983 1.22648 1.19404 1.20640 0.98046 0.90108 0.87986 1.21610 0.98395 0.99126 0.98505 0.93767 0.92454 0.87604 0.93753 0.91729 0.87457 0.86522 0.76106 0.78949 0.74783 0.91609 0.89440 0.92648 0.90148 0.98915 0.94688 0.94175 0.94652 0.94573 0.92946 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.98 10.70 -148.98 -1.59 -10.58 16 3 C 0.07 1.44 6.26 71.98 0.45 1.89 16 4 C 0.12 2.73 6.18 86.38 0.53 3.27 16 5 N -0.27 -6.24 3.35 -334.70 -1.12 -7.36 16 6 N -0.30 -6.44 11.90 -57.14 -0.68 -7.12 16 7 C 0.00 0.04 12.03 85.18 1.02 1.06 16 8 C -0.17 -2.80 10.50 22.66 0.24 -2.56 16 9 C -0.06 -1.28 6.96 40.79 0.28 -0.99 16 10 C 0.59 15.80 7.63 86.59 0.66 16.46 16 11 O -0.57 -19.24 14.27 -4.12 -0.06 -19.29 16 12 N -0.70 -16.63 4.87 -455.58 -2.22 -18.84 16 13 C 0.17 5.10 2.00 43.01 0.09 5.18 16 14 H 0.07 2.20 6.58 -2.39 -0.02 2.18 16 15 C -0.10 -2.96 5.00 29.76 0.15 -2.81 16 16 C -0.13 -4.27 5.71 30.22 0.17 -4.10 16 17 C 0.19 8.46 4.74 86.49 0.41 8.87 16 18 N -0.60 -28.67 2.25 -698.38 -1.57 -30.24 16 19 C -0.27 -14.23 9.33 84.03 0.78 -13.45 16 20 H 0.06 3.22 7.93 -2.91 -0.02 3.19 16 21 C -0.04 -2.15 4.63 84.86 0.39 -1.76 16 22 N -0.93 -54.12 11.81 21.65 0.26 -53.87 16 23 Si 0.96 43.75 29.61 68.60 2.03 45.78 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 C 0.16 6.69 5.65 87.37 0.49 7.18 16 28 C -0.14 -4.67 5.20 29.39 0.15 -4.52 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 2.85 6.30 -2.39 -0.02 2.83 16 35 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.22 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.19 1.77 7.58 -2.91 -0.02 1.75 16 38 H 0.41 7.27 7.64 -92.71 -0.71 6.57 16 39 H 0.07 2.20 7.48 -2.39 -0.02 2.18 16 40 H 0.09 1.97 8.05 -2.39 -0.02 1.96 16 41 H 0.05 1.82 7.31 -2.39 -0.02 1.80 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H -0.01 -0.37 8.05 -2.39 -0.02 -0.39 16 44 H 0.03 1.77 6.79 -2.39 -0.02 1.75 16 45 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 47 H 0.04 1.58 7.99 -2.39 -0.02 1.56 16 48 H 0.05 1.81 8.04 -2.39 -0.02 1.79 16 49 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -69.74 392.23 2.36 -67.38 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.24 Total: 18.78 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 7.08 Total: 15.38 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -5.33 Total: -117.44 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.65 Total: -29.87 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.74 2.36 -67.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052477588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.774 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds