Wall clock time and date at job start Tue Mar 31 2020 19:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00394 * 2 1 4 4 C 1.53000 * 109.47193 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47023 * 180.02562 * 4 3 2 6 6 N 1.28447 * 125.19010 * 93.14617 * 5 4 3 7 7 C 1.30864 * 110.92794 * 179.97438 * 6 5 4 8 8 C 1.39673 * 107.86319 * 359.97438 * 7 6 5 9 9 C 1.36600 * 125.19174 * 273.41767 * 5 4 3 10 10 C 1.47165 * 126.88589 * 359.97438 * 9 5 4 11 11 O 1.21629 * 119.99830 * 5.93507 * 10 9 5 12 12 N 1.34776 * 120.00398 * 185.93753 * 10 9 5 13 13 C 1.46494 * 120.00331 * 185.02185 * 12 10 9 14 14 H 1.09006 * 109.20089 * 35.63542 * 13 12 10 15 15 C 1.50124 * 109.21374 * 154.99499 * 13 12 10 16 16 C 1.52516 * 105.41891 * 218.02623 * 15 13 12 17 17 C 1.46246 * 114.27958 * 270.59453 * 16 15 13 18 18 N 1.50172 * 107.53019 * 58.40902 * 17 16 15 19 19 C 1.36934 * 120.53642 * 109.56848 * 18 17 16 20 20 H 1.08000 * 119.99700 * 160.15724 * 19 18 17 21 21 C 1.38810 * 120.00113 * 340.15761 * 19 18 17 22 22 N 1.31626 * 119.99958 * 338.48246 * 21 19 18 23 23 Si 1.86793 * 120.00383 * 158.48843 * 21 19 18 24 24 H 1.48504 * 109.47331 * 89.99519 * 23 21 19 25 25 H 1.48496 * 109.47507 * 210.00066 * 23 21 19 26 26 H 1.48506 * 109.46872 * 329.99635 * 23 21 19 27 27 C 1.43431 * 118.92194 * 289.58567 * 18 17 16 28 28 C 1.54845 * 109.20668 * 276.32347 * 13 12 10 29 29 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46717 * 299.99977 * 1 2 3 31 31 H 1.09004 * 109.47022 * 59.99623 * 1 2 3 32 32 H 1.09002 * 109.47015 * 59.99952 * 3 2 1 33 33 H 1.09001 * 109.47114 * 300.00113 * 3 2 1 34 34 H 1.08998 * 109.46949 * 60.00279 * 4 3 2 35 35 H 1.09001 * 109.47044 * 299.99987 * 4 3 2 36 36 H 1.08001 * 126.07020 * 179.97438 * 7 6 5 37 37 H 1.08008 * 127.32417 * 179.97438 * 8 7 6 38 38 H 0.97006 * 119.99439 * 5.01847 * 12 10 9 39 39 H 1.09005 * 110.24569 * 337.00547 * 15 13 12 40 40 H 1.09003 * 110.24223 * 99.04834 * 15 13 12 41 41 H 1.08993 * 108.52603 * 31.83838 * 16 15 13 42 42 H 1.09007 * 108.52345 * 149.51326 * 16 15 13 43 43 H 1.09000 * 109.84311 * 177.91486 * 17 16 15 44 44 H 1.08998 * 109.84046 * 298.83714 * 17 16 15 45 45 H 0.96999 * 120.00265 * 180.02562 * 22 21 19 46 46 H 1.08994 * 108.15898 * 213.28565 * 27 18 17 47 47 H 1.08999 * 108.16077 * 330.06640 * 27 18 17 48 48 H 1.08996 * 109.36063 * 320.99318 * 28 13 12 49 49 H 1.09004 * 109.35829 * 80.58343 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 4.1315 2.5228 0.0000 6 7 4.4856 3.1749 1.0484 7 6 4.9857 4.3407 0.7270 8 6 4.9519 4.4524 -0.6648 9 6 4.3905 3.2697 -1.1140 10 6 4.1300 2.8906 -2.5119 11 8 3.5354 1.8594 -2.7617 12 7 4.5502 3.6861 -3.5155 13 6 4.1963 3.3667 -4.9007 14 1 3.1928 2.9418 -4.9254 15 6 4.2202 4.6248 -5.7194 16 6 3.0498 4.4999 -6.6892 17 6 3.3839 3.8455 -7.9537 18 7 3.9102 2.4769 -7.6296 19 6 3.1739 1.3606 -7.9245 20 1 3.6578 0.3976 -7.9944 21 6 1.8058 1.4667 -8.1335 22 7 1.1448 2.4987 -7.6533 23 14 0.9026 0.1450 -9.0960 24 1 0.4274 -0.9088 -8.1638 25 1 -0.2602 0.7488 -9.7948 26 1 1.8228 -0.4560 -10.0948 27 6 5.1962 2.3580 -7.0058 28 6 5.2018 2.3289 -5.4570 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6434 0.8891 36 1 5.3585 5.0845 1.4157 37 1 5.2873 5.2868 -1.2632 38 1 5.0871 4.4702 -3.3204 39 1 4.0868 5.4954 -5.0771 40 1 5.1589 4.6997 -6.2684 41 1 2.2571 3.9308 -6.2038 42 1 2.6731 5.4991 -6.9080 43 1 2.4916 3.7616 -8.5740 44 1 4.1463 4.4215 -8.4783 45 1 0.1887 2.5727 -7.7990 46 1 5.6643 1.4413 -7.3644 47 1 5.8097 3.1990 -7.3291 48 1 6.2023 2.5649 -5.0948 49 1 4.9208 1.3333 -5.1134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052477592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:21 Heat of formation + Delta-G solvation = 32.875574 kcal Electronic energy + Delta-G solvation = -30467.837916 eV Core-core repulsion = 26433.216957 eV Total energy + Delta-G solvation = -4034.620959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.64674 -39.47994 -38.08156 -37.62326 -34.84911 -33.90655 -32.45275 -31.61746 -31.06449 -29.58160 -29.38707 -26.44675 -26.19887 -24.33980 -23.81712 -23.35716 -22.43736 -21.34143 -20.34415 -19.58219 -19.13494 -17.93356 -16.79051 -16.72462 -16.20444 -16.10619 -15.75787 -15.36946 -15.09485 -14.76927 -14.61987 -14.36822 -13.92940 -13.81896 -13.73993 -13.61892 -13.19177 -12.95316 -12.50281 -12.25832 -12.22966 -11.89191 -11.67489 -11.48190 -11.45327 -11.25840 -10.93759 -10.77444 -10.66668 -10.41503 -10.27559 -10.09572 -9.84534 -9.77273 -9.63546 -9.52194 -9.37883 -9.34018 -9.17367 -8.65052 -8.35743 -6.73878 -5.77299 -3.11958 1.22609 2.14745 2.49631 3.29147 3.35826 3.41378 3.48668 3.51213 3.83322 4.38781 4.54826 4.66064 4.75355 4.86054 5.03332 5.10414 5.19610 5.28714 5.32599 5.39211 5.40956 5.52146 5.54697 5.57017 5.57838 5.64649 5.70430 5.83448 5.98858 6.23799 6.25974 6.34226 6.38659 6.44749 6.56733 6.67195 6.79875 6.87077 6.91298 6.91738 6.99583 7.07121 7.19186 7.60742 7.69917 7.76184 7.94754 7.94985 8.37631 8.43160 9.20972 9.89624 10.39970 11.30766 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.003709 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.615983 B = 7548.178320 C = 9374.742207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.056 3.944 4 C 0.123 3.877 5 N -0.256 5.256 6 N -0.282 5.282 7 C -0.002 4.002 8 C -0.194 4.194 9 C -0.025 4.025 10 C 0.578 3.422 11 O -0.526 6.526 12 N -0.710 5.710 13 C 0.158 3.842 14 H 0.102 0.898 15 C -0.122 4.122 16 C -0.126 4.126 17 C 0.161 3.839 18 N -0.589 5.589 19 C -0.246 4.246 20 H 0.069 0.931 21 C 0.001 3.999 22 N -0.901 5.901 23 Si 0.897 3.103 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.161 3.839 28 C -0.152 4.152 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.186 0.814 37 H 0.161 0.839 38 H 0.394 0.606 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.031 0.969 43 H 0.097 0.903 44 H 0.006 0.994 45 H 0.252 0.748 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.046 0.954 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 5.781 14.593 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C -0.022 4.022 4 C 0.003 3.997 5 N -0.045 5.045 6 N -0.114 5.114 7 C -0.178 4.178 8 C -0.223 4.223 9 C -0.154 4.154 10 C 0.362 3.638 11 O -0.402 6.402 12 N -0.360 5.360 13 C 0.056 3.944 14 H 0.120 0.880 15 C -0.160 4.160 16 C -0.165 4.165 17 C 0.037 3.963 18 N -0.310 5.310 19 C -0.375 4.375 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.727 3.273 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.032 3.968 28 C -0.194 4.194 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.124 0.876 36 H 0.203 0.797 37 H 0.178 0.822 38 H 0.228 0.772 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.050 0.950 43 H 0.115 0.885 44 H 0.024 0.976 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.825 4.037 15.239 16.486 hybrid contribution -0.323 0.557 -0.724 0.969 sum 4.503 4.594 14.514 15.876 Atomic orbital electron populations 1.22780 0.80038 1.03096 1.00298 1.87778 1.20473 1.26444 1.95539 1.22617 0.92310 0.85873 1.01419 1.21778 0.92762 0.78266 1.06898 1.45504 1.42526 1.14387 1.02078 1.73210 1.16747 1.07686 1.13733 1.23564 1.04058 0.95191 0.95018 1.22251 1.06326 0.98104 0.95620 1.21753 1.08772 0.94576 0.90270 1.16981 0.79867 0.84154 0.82842 1.90879 1.41330 1.23656 1.84337 1.46261 1.54067 1.28328 1.07355 1.21356 1.01127 0.95553 0.76338 0.87961 1.21386 1.00924 0.95368 0.98339 1.20887 0.97667 0.99384 0.98611 1.20268 0.97859 0.83141 0.94998 1.44321 1.17449 1.02892 1.66325 1.19215 0.89367 0.88112 1.40843 0.91363 1.24783 0.96069 0.97774 1.00978 1.69987 1.07250 1.31319 1.46085 0.86368 0.79226 0.81390 0.80278 1.21606 1.21684 1.20689 1.20351 0.88852 0.98341 0.89292 1.23331 0.96507 0.98970 1.00612 0.89169 0.94113 0.93428 0.92924 0.91716 0.85915 0.87590 0.79686 0.82182 0.77178 0.92675 0.91644 0.88369 0.95004 0.88544 0.97554 0.93833 0.94726 0.95242 0.93572 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.35 10.70 -35.23 -0.38 -5.73 16 3 C 0.06 0.75 6.23 37.16 0.23 0.98 16 4 C 0.12 1.64 6.00 -4.04 -0.02 1.61 16 5 N -0.26 -3.55 3.35 -57.14 -0.19 -3.74 16 6 N -0.28 -3.68 11.90 30.59 0.36 -3.32 16 7 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 8 C -0.19 -2.11 10.50 -38.98 -0.41 -2.52 16 9 C -0.03 -0.35 6.96 -82.06 -0.57 -0.92 16 10 C 0.58 9.50 7.73 -12.64 -0.10 9.40 16 11 O -0.53 -10.64 14.17 5.25 0.07 -10.56 16 12 N -0.71 -10.51 4.95 -55.41 -0.27 -10.78 16 13 C 0.16 2.88 2.18 -68.39 -0.15 2.73 16 14 H 0.10 2.40 6.34 -51.93 -0.33 2.07 16 15 C -0.12 -2.02 5.34 -28.41 -0.15 -2.17 16 16 C -0.13 -2.56 5.02 -30.19 -0.15 -2.71 16 17 C 0.16 3.60 5.25 -5.20 -0.03 3.57 16 18 N -0.59 -14.07 2.61 -175.08 -0.46 -14.53 16 19 C -0.25 -6.61 9.64 -15.06 -0.15 -6.76 16 20 H 0.07 1.85 7.90 -52.49 -0.41 1.43 16 21 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 22 N -0.90 -24.73 9.48 55.49 0.53 -24.20 16 23 Si 0.90 21.65 29.60 -169.99 -5.03 16.62 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 C 0.16 3.29 5.18 -4.66 -0.02 3.27 16 28 C -0.15 -2.86 5.98 -24.75 -0.15 -3.01 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.00 7.76 -51.93 -0.40 0.60 16 34 H 0.12 1.82 6.66 -51.93 -0.35 1.47 16 35 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.16 1.24 7.63 -52.48 -0.40 0.84 16 38 H 0.39 4.45 7.56 -40.82 -0.31 4.15 16 39 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 40 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 41 H 0.10 2.37 5.50 -51.93 -0.29 2.09 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 2.44 5.84 -51.93 -0.30 2.14 16 44 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 45 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 46 H 0.03 0.71 7.99 -51.93 -0.41 0.30 16 47 H 0.03 0.54 6.88 -51.93 -0.36 0.19 16 48 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 49 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -31.14 385.83 -8.06 -39.21 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.66 Total: 6.55 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.85 Total: 4.68 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.03 Total: -56.58 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.30 Total: -16.29 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.14 -8.06 -39.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052477592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.081 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds