Wall clock time and date at job start Tue Mar 31 2020 19:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00394 * 2 1 4 4 C 1.53000 * 109.47193 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47023 * 180.02562 * 4 3 2 6 6 N 1.28447 * 125.19010 * 93.14617 * 5 4 3 7 7 C 1.30864 * 110.92794 * 179.97438 * 6 5 4 8 8 C 1.39673 * 107.86319 * 359.97438 * 7 6 5 9 9 C 1.36600 * 125.19174 * 273.41767 * 5 4 3 10 10 C 1.47165 * 126.88589 * 359.97438 * 9 5 4 11 11 O 1.21629 * 119.99830 * 5.93507 * 10 9 5 12 12 N 1.34776 * 120.00398 * 185.93753 * 10 9 5 13 13 C 1.46494 * 120.00331 * 185.02185 * 12 10 9 14 14 H 1.09006 * 109.20089 * 35.63542 * 13 12 10 15 15 C 1.50124 * 109.21374 * 154.99499 * 13 12 10 16 16 C 1.52516 * 105.41891 * 218.02623 * 15 13 12 17 17 C 1.46246 * 114.27958 * 270.59453 * 16 15 13 18 18 N 1.50172 * 107.53019 * 58.40902 * 17 16 15 19 19 C 1.36934 * 120.53642 * 109.56848 * 18 17 16 20 20 H 1.08000 * 119.99700 * 160.15724 * 19 18 17 21 21 C 1.38810 * 120.00113 * 340.15761 * 19 18 17 22 22 N 1.31626 * 119.99958 * 338.48246 * 21 19 18 23 23 Si 1.86793 * 120.00383 * 158.48843 * 21 19 18 24 24 H 1.48504 * 109.47331 * 89.99519 * 23 21 19 25 25 H 1.48496 * 109.47507 * 210.00066 * 23 21 19 26 26 H 1.48506 * 109.46872 * 329.99635 * 23 21 19 27 27 C 1.43431 * 118.92194 * 289.58567 * 18 17 16 28 28 C 1.54845 * 109.20668 * 276.32347 * 13 12 10 29 29 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46717 * 299.99977 * 1 2 3 31 31 H 1.09004 * 109.47022 * 59.99623 * 1 2 3 32 32 H 1.09002 * 109.47015 * 59.99952 * 3 2 1 33 33 H 1.09001 * 109.47114 * 300.00113 * 3 2 1 34 34 H 1.08998 * 109.46949 * 60.00279 * 4 3 2 35 35 H 1.09001 * 109.47044 * 299.99987 * 4 3 2 36 36 H 1.08001 * 126.07020 * 179.97438 * 7 6 5 37 37 H 1.08008 * 127.32417 * 179.97438 * 8 7 6 38 38 H 0.97006 * 119.99439 * 5.01847 * 12 10 9 39 39 H 1.09005 * 110.24569 * 337.00547 * 15 13 12 40 40 H 1.09003 * 110.24223 * 99.04834 * 15 13 12 41 41 H 1.08993 * 108.52603 * 31.83838 * 16 15 13 42 42 H 1.09007 * 108.52345 * 149.51326 * 16 15 13 43 43 H 1.09000 * 109.84311 * 177.91486 * 17 16 15 44 44 H 1.08998 * 109.84046 * 298.83714 * 17 16 15 45 45 H 0.96999 * 120.00265 * 180.02562 * 22 21 19 46 46 H 1.08994 * 108.15898 * 213.28565 * 27 18 17 47 47 H 1.08999 * 108.16077 * 330.06640 * 27 18 17 48 48 H 1.08996 * 109.36063 * 320.99318 * 28 13 12 49 49 H 1.09004 * 109.35829 * 80.58343 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 4.1315 2.5228 0.0000 6 7 4.4856 3.1749 1.0484 7 6 4.9857 4.3407 0.7270 8 6 4.9519 4.4524 -0.6648 9 6 4.3905 3.2697 -1.1140 10 6 4.1300 2.8906 -2.5119 11 8 3.5354 1.8594 -2.7617 12 7 4.5502 3.6861 -3.5155 13 6 4.1963 3.3667 -4.9007 14 1 3.1928 2.9418 -4.9254 15 6 4.2202 4.6248 -5.7194 16 6 3.0498 4.4999 -6.6892 17 6 3.3839 3.8455 -7.9537 18 7 3.9102 2.4769 -7.6296 19 6 3.1739 1.3606 -7.9245 20 1 3.6578 0.3976 -7.9944 21 6 1.8058 1.4667 -8.1335 22 7 1.1448 2.4987 -7.6533 23 14 0.9026 0.1450 -9.0960 24 1 0.4274 -0.9088 -8.1638 25 1 -0.2602 0.7488 -9.7948 26 1 1.8228 -0.4560 -10.0948 27 6 5.1962 2.3580 -7.0058 28 6 5.2018 2.3289 -5.4570 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6434 0.8891 36 1 5.3585 5.0845 1.4157 37 1 5.2873 5.2868 -1.2632 38 1 5.0871 4.4702 -3.3204 39 1 4.0868 5.4954 -5.0771 40 1 5.1589 4.6997 -6.2684 41 1 2.2571 3.9308 -6.2038 42 1 2.6731 5.4991 -6.9080 43 1 2.4916 3.7616 -8.5740 44 1 4.1463 4.4215 -8.4783 45 1 0.1887 2.5727 -7.7990 46 1 5.6643 1.4413 -7.3644 47 1 5.8097 3.1990 -7.3291 48 1 6.2023 2.5649 -5.0948 49 1 4.9208 1.3333 -5.1134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052477592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:20 Heat of formation + Delta-G solvation = 11.568427 kcal Electronic energy + Delta-G solvation = -30468.761863 eV Core-core repulsion = 26433.216957 eV Total energy + Delta-G solvation = -4035.544906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.60152 -40.86068 -39.23651 -39.08342 -36.37694 -34.98667 -34.07047 -33.31261 -32.43936 -31.00336 -30.37554 -27.98525 -27.35919 -25.80882 -25.35264 -24.59973 -23.67731 -22.42884 -21.89367 -20.89729 -20.64579 -19.07000 -18.58981 -17.84034 -17.28342 -17.20162 -17.05382 -16.88259 -16.55917 -16.11126 -15.81981 -15.67473 -15.49704 -15.26198 -14.97172 -14.88484 -14.51588 -14.15124 -13.92519 -13.85348 -13.49790 -13.23308 -13.18951 -13.12911 -12.70273 -12.65542 -12.43483 -12.38985 -12.14771 -11.93334 -11.86068 -11.75283 -11.56506 -11.20290 -11.12232 -11.03672 -10.89306 -10.43072 -10.37162 -10.12144 -9.91960 -8.66506 -7.82843 -5.18082 0.17749 1.16033 1.44464 1.47212 1.55422 1.63427 2.11013 2.16684 2.54947 2.82921 3.30104 3.43677 3.56927 3.63965 3.72357 3.92186 4.03387 4.03734 4.10607 4.16498 4.33875 4.34831 4.36774 4.48174 4.50502 4.52048 4.63416 4.65934 4.70998 4.75231 4.85659 4.88901 4.91918 5.08333 5.19177 5.29029 5.31543 5.41657 5.48342 5.53443 5.64354 5.67358 5.67947 5.81236 5.91776 6.20816 6.42309 6.50200 7.01736 7.19026 7.20095 7.95292 8.40956 9.21647 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.003709 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.615983 B = 7548.178320 C = 9374.742207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.065 3.935 4 C 0.127 3.873 5 N -0.269 5.269 6 N -0.298 5.298 7 C 0.005 3.995 8 C -0.168 4.168 9 C -0.056 4.056 10 C 0.575 3.425 11 O -0.576 6.576 12 N -0.693 5.693 13 C 0.173 3.827 14 H 0.042 0.958 15 C -0.107 4.107 16 C -0.120 4.120 17 C 0.162 3.838 18 N -0.603 5.603 19 C -0.259 4.259 20 H 0.057 0.943 21 C -0.043 4.043 22 N -0.915 5.915 23 Si 0.950 3.050 24 H -0.297 1.297 25 H -0.290 1.290 26 H -0.275 1.275 27 C 0.156 3.844 28 C -0.141 4.141 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.227 0.773 37 H 0.199 0.801 38 H 0.417 0.583 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.033 0.967 45 H 0.245 0.755 46 H 0.026 0.974 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.842 8.423 16.045 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.013 4.013 4 C 0.006 3.994 5 N -0.058 5.058 6 N -0.129 5.129 7 C -0.171 4.171 8 C -0.197 4.197 9 C -0.184 4.184 10 C 0.361 3.639 11 O -0.456 6.456 12 N -0.345 5.345 13 C 0.069 3.931 14 H 0.060 0.940 15 C -0.144 4.144 16 C -0.159 4.159 17 C 0.039 3.961 18 N -0.325 5.325 19 C -0.389 4.389 20 H 0.075 0.925 21 C -0.239 4.239 22 N -0.561 5.561 23 Si 0.780 3.220 24 H -0.224 1.224 25 H -0.216 1.216 26 H -0.200 1.200 27 C 0.027 3.973 28 C -0.183 4.183 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.243 0.757 37 H 0.216 0.784 38 H 0.255 0.745 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.025 6.720 16.695 19.319 hybrid contribution -0.960 -0.236 -1.120 1.494 sum 6.065 6.485 15.575 17.928 Atomic orbital electron populations 1.22982 0.78657 1.04458 1.00735 1.87751 1.22118 1.26769 1.95588 1.22499 0.92614 0.85610 1.00532 1.21653 0.92515 0.78754 1.06449 1.45510 1.43445 1.14539 1.02310 1.73217 1.17246 1.08825 1.13649 1.24314 1.02409 0.94785 0.95632 1.22757 1.03529 0.97283 0.96116 1.21592 1.11460 0.96349 0.88954 1.17392 0.78870 0.83434 0.84222 1.90865 1.43495 1.25971 1.85244 1.45929 1.53994 1.28827 1.05757 1.20867 0.97727 0.96082 0.78422 0.94018 1.21296 1.00059 0.95471 0.97617 1.20695 0.98094 0.99115 0.98026 1.20223 0.97140 0.82927 0.95787 1.44480 1.18173 1.02700 1.67119 1.19379 0.89893 0.88894 1.40742 0.92474 1.25371 0.96767 0.99686 1.02062 1.70155 1.06795 1.32464 1.46709 0.85546 0.78227 0.79244 0.79029 1.22424 1.21558 1.19978 1.20491 0.87487 0.99300 0.89990 1.23189 0.98419 0.97246 0.99478 0.87436 0.91944 0.94675 0.91443 0.94671 0.88372 0.85864 0.75683 0.78444 0.74500 0.89138 0.89497 0.92867 0.93333 0.92101 0.94851 0.94531 0.95603 0.92002 0.90080 0.96327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.86 16 2 O -0.40 -11.73 10.70 -148.98 -1.59 -13.32 16 3 C 0.07 1.85 6.23 71.98 0.45 2.30 16 4 C 0.13 3.51 6.00 86.38 0.52 4.03 16 5 N -0.27 -7.30 3.35 -334.69 -1.12 -8.42 16 6 N -0.30 -7.13 11.90 -57.14 -0.68 -7.81 16 7 C 0.00 0.08 12.03 85.18 1.02 1.11 16 8 C -0.17 -3.00 10.50 22.66 0.24 -2.77 16 9 C -0.06 -1.50 6.96 40.79 0.28 -1.22 16 10 C 0.57 19.10 7.73 86.59 0.67 19.77 16 11 O -0.58 -24.98 14.17 -4.12 -0.06 -25.04 16 12 N -0.69 -19.49 4.95 -447.48 -2.22 -21.70 16 13 C 0.17 6.22 2.18 44.70 0.10 6.32 16 14 H 0.04 2.06 6.34 -2.38 -0.02 2.05 16 15 C -0.11 -3.24 5.34 29.51 0.16 -3.08 16 16 C -0.12 -4.80 5.02 28.35 0.14 -4.66 16 17 C 0.16 7.24 5.25 83.58 0.44 7.68 16 18 N -0.60 -29.20 2.61 -707.82 -1.85 -31.05 16 19 C -0.26 -14.41 9.64 84.03 0.81 -13.59 16 20 H 0.06 3.23 7.90 -2.91 -0.02 3.20 16 21 C -0.04 -2.42 4.91 84.86 0.42 -2.00 16 22 N -0.91 -52.47 9.48 21.65 0.21 -52.26 16 23 Si 0.95 46.07 29.60 68.60 2.03 48.10 16 24 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 27 C 0.16 6.24 5.18 87.60 0.45 6.69 16 28 C -0.14 -5.28 5.98 31.88 0.19 -5.08 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.03 0.85 8.14 -2.38 -0.02 0.84 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.18 7.76 -2.39 -0.02 1.17 16 34 H 0.10 3.18 6.66 -2.39 -0.02 3.16 16 35 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.23 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.20 1.88 7.63 -2.91 -0.02 1.86 16 38 H 0.42 7.78 7.56 -92.70 -0.70 7.08 16 39 H 0.09 2.14 7.85 -2.38 -0.02 2.12 16 40 H 0.09 2.34 6.28 -2.39 -0.01 2.32 16 41 H 0.05 2.66 5.50 -2.39 -0.01 2.65 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.06 3.16 5.84 -2.39 -0.01 3.14 16 44 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 45 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 46 H 0.03 1.06 7.99 -2.39 -0.02 1.05 16 47 H 0.06 2.08 6.88 -2.39 -0.02 2.06 16 48 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 49 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -74.17 385.83 2.12 -72.06 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.26 Total: 22.09 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.14 Total: 17.35 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -5.66 Total: -121.24 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.65 Total: -38.36 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -74.17 2.12 -72.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052477592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.628 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds