Wall clock time and date at job start Tue Mar 31 2020 19:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99819 * 2 1 4 4 C 1.53002 * 109.46818 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47170 * 180.02562 * 4 3 2 6 6 C 1.35033 * 124.88384 * 125.02064 * 5 4 3 7 7 C 1.35362 * 107.22887 * 179.72875 * 6 5 4 8 8 C 1.41505 * 105.50110 * 0.41677 * 7 6 5 9 9 C 1.47711 * 126.51693 * 179.83919 * 8 7 6 10 10 O 1.21572 * 120.00173 * 359.71990 * 9 8 7 11 11 N 1.34775 * 120.00018 * 179.71488 * 9 8 7 12 12 C 1.46502 * 119.99961 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.49184 * 325.04165 * 12 11 9 14 14 C 1.52576 * 109.48705 * 205.00009 * 12 11 9 15 15 C 1.47090 * 114.32498 * 155.02300 * 14 12 11 16 16 C 1.54860 * 110.32374 * 62.79675 * 15 14 12 17 17 N 1.44575 * 109.60592 * 288.73620 * 16 15 14 18 18 C 1.36935 * 118.64242 * 270.70972 * 17 16 15 19 19 H 1.08002 * 120.00415 * 27.23781 * 18 17 16 20 20 C 1.38815 * 120.00137 * 206.96980 * 18 17 16 21 21 N 1.31620 * 119.99298 * 17.02045 * 20 18 17 22 22 Si 1.86791 * 120.00118 * 197.02174 * 20 18 17 23 23 H 1.48500 * 109.47253 * 90.00232 * 22 20 18 24 24 H 1.48502 * 109.47293 * 209.99654 * 22 20 18 25 25 H 1.48498 * 109.47439 * 329.99788 * 22 20 18 26 26 C 1.47605 * 122.71592 * 90.97965 * 17 16 15 27 27 C 1.50877 * 109.49263 * 85.11581 * 12 11 9 28 28 N 1.28464 * 124.88333 * 305.02821 * 5 4 3 29 29 H 1.08995 * 109.47167 * 299.99551 * 1 2 3 30 30 H 1.09000 * 109.47105 * 59.99628 * 1 2 3 31 31 H 1.08993 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46824 * 60.00626 * 3 2 1 33 33 H 1.08994 * 109.47356 * 299.99696 * 3 2 1 34 34 H 1.08996 * 109.47388 * 60.00119 * 4 3 2 35 35 H 1.09007 * 109.47294 * 300.00498 * 4 3 2 36 36 H 1.08005 * 126.38720 * 0.02562 * 6 5 4 37 37 H 1.08001 * 127.25438 * 180.26189 * 7 6 5 38 38 H 0.96997 * 120.00026 * 359.97438 * 11 9 8 39 39 H 1.09002 * 108.51087 * 33.76428 * 14 12 11 40 40 H 1.09001 * 108.38461 * 276.18839 * 14 12 11 41 41 H 1.08998 * 109.32303 * 302.53792 * 15 14 12 42 42 H 1.08998 * 109.18452 * 182.97207 * 15 14 12 43 43 H 1.08998 * 109.45004 * 168.69132 * 16 15 14 44 44 H 1.09004 * 109.44913 * 48.77621 * 16 15 14 45 45 H 0.97003 * 119.99220 * 179.97438 * 21 20 18 46 46 H 1.08996 * 108.94504 * 78.30134 * 26 17 16 47 47 H 1.08998 * 108.95095 * 196.93066 * 26 17 16 48 48 H 1.09008 * 109.36313 * 332.04027 * 27 12 11 49 49 H 1.08996 * 109.36870 * 91.65611 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0258 2.9697 0.9089 7 6 5.3400 4.2419 0.5697 8 6 4.5729 4.5258 -0.5850 9 6 4.5583 5.7951 -1.3404 10 8 5.2510 6.7262 -0.9780 11 7 3.7772 5.9210 -2.4314 12 6 3.7632 7.1797 -3.1810 13 1 3.8783 8.0153 -2.4907 14 6 2.4385 7.3137 -3.9260 15 6 2.0485 8.7003 -4.2240 16 6 3.0861 9.3605 -5.1651 17 7 4.3126 9.6049 -4.4396 18 6 4.4594 10.7965 -3.7812 19 1 3.5889 11.3289 -3.4273 20 6 5.7275 11.3177 -3.5636 21 7 6.7515 10.8684 -4.2578 22 14 5.9805 12.6563 -2.2856 23 1 6.2812 12.0350 -0.9708 24 1 7.1150 13.5230 -2.6944 25 1 4.7466 13.4752 -2.1755 26 6 5.4154 8.6254 -4.3842 27 6 4.8987 7.1867 -4.1745 28 7 3.8781 3.4404 -0.8615 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8575 0.6436 -0.8891 35 1 3.8568 0.6438 0.8909 36 1 5.4209 2.4138 1.7464 37 1 6.0290 4.9022 1.0754 38 1 3.2249 5.1780 -2.7209 39 1 1.6545 6.8555 -3.3231 40 1 2.5155 6.7663 -4.8655 41 1 1.9926 9.2669 -3.2945 42 1 1.0713 8.7017 -4.7068 43 1 2.6897 10.3054 -5.5365 44 1 3.2879 8.6965 -6.0057 45 1 7.6376 11.2329 -4.1060 46 1 5.9765 8.6711 -5.3175 47 1 6.0799 8.8866 -3.5606 48 1 5.7101 6.5622 -3.8004 49 1 4.5483 6.7888 -5.1267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052550657.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:26 Heat of formation + Delta-G solvation = 26.240275 kcal Electronic energy + Delta-G solvation = -29507.033414 eV Core-core repulsion = 25472.124727 eV Total energy + Delta-G solvation = -4034.908687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.80983 -39.41691 -38.50462 -37.45106 -34.56458 -34.25078 -32.77570 -31.16142 -30.72695 -30.34237 -29.57147 -26.92402 -25.98042 -24.79252 -23.67222 -23.18005 -22.17633 -21.53412 -20.09851 -19.68076 -19.11545 -18.03281 -17.16696 -16.68939 -16.50985 -16.40826 -15.96363 -15.70339 -15.21209 -14.91571 -14.41251 -14.19101 -14.09176 -13.83527 -13.62821 -13.45384 -13.24949 -13.03538 -12.70832 -12.52612 -12.33257 -12.15051 -11.88994 -11.83576 -11.51026 -11.03668 -11.00498 -10.78824 -10.69318 -10.33291 -10.29541 -10.12064 -9.98654 -9.86982 -9.63858 -9.59266 -9.47661 -9.41227 -9.20456 -8.58788 -8.23859 -6.53896 -5.65056 -3.08583 1.53289 1.99389 2.07997 3.25732 3.49882 3.52948 3.56412 3.57757 3.67439 4.04955 4.30922 4.55321 4.60180 4.63471 4.66895 4.81211 4.83886 5.05802 5.08451 5.16170 5.24029 5.28738 5.38607 5.55582 5.57487 5.65259 5.69920 5.85213 6.09956 6.20218 6.27088 6.30296 6.40929 6.43078 6.52526 6.56241 6.58704 6.69828 6.78144 6.86792 6.93957 7.10148 7.16802 7.55695 7.65530 7.83875 7.96630 7.98241 8.59300 8.61417 9.37125 10.04516 10.49335 11.42510 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.002597 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.224578 B =10777.436898 C =11780.199772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.287 5.287 6 C -0.018 4.018 7 C -0.177 4.177 8 C -0.003 4.003 9 C 0.595 3.405 10 O -0.518 6.518 11 N -0.714 5.714 12 C 0.154 3.846 13 H 0.104 0.896 14 C -0.106 4.106 15 C -0.145 4.145 16 C 0.157 3.843 17 N -0.591 5.591 18 C -0.259 4.259 19 H 0.064 0.936 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.898 3.102 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.280 1.280 26 C 0.183 3.817 27 C -0.147 4.147 28 N -0.266 5.266 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.182 0.818 37 H 0.164 0.836 38 H 0.396 0.604 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.032 0.968 45 H 0.252 0.748 46 H 0.026 0.974 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.386 -23.759 8.581 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.076 5.076 6 C -0.160 4.160 7 C -0.205 4.205 8 C -0.164 4.164 9 C 0.377 3.623 10 O -0.391 6.391 11 N -0.365 5.365 12 C 0.051 3.949 13 H 0.122 0.878 14 C -0.144 4.144 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.312 5.312 18 C -0.388 4.388 19 H 0.082 0.918 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.728 3.272 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.206 1.206 26 C 0.057 3.943 27 C -0.187 4.187 28 N -0.102 5.102 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.200 0.800 37 H 0.182 0.818 38 H 0.230 0.770 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.415 -23.744 8.059 27.152 hybrid contribution 0.319 0.633 1.204 1.397 sum -10.096 -23.111 9.263 26.867 Atomic orbital electron populations 1.22796 0.79752 1.03178 1.00553 1.87771 1.20734 1.26740 1.95642 1.22656 0.92213 0.85545 1.02404 1.21639 0.92986 0.78713 1.06115 1.45273 1.31589 1.11455 1.19295 1.22859 0.97999 0.96734 0.98396 1.21856 1.04296 0.95942 0.98393 1.22224 1.00850 0.94032 0.99341 1.16893 0.80459 0.84779 0.80121 1.90885 1.41375 1.38792 1.68026 1.46173 1.45094 1.17239 1.27981 1.20557 0.95030 0.85238 0.94052 0.87818 1.20567 0.95721 0.98841 0.99273 1.21448 0.99180 0.95664 1.02289 1.20690 0.87223 0.97351 0.91891 1.43676 1.14292 1.15354 1.57893 1.19160 0.92184 0.98094 1.29409 0.91807 1.25008 0.96771 0.98272 0.99112 1.70067 0.99620 1.45092 1.39835 0.86358 0.77271 0.81402 0.82146 1.21286 1.21916 1.20550 1.21002 0.89227 0.83074 1.00961 1.22498 0.97534 1.01449 0.97211 1.73465 1.23147 0.97780 1.15792 0.93748 0.93524 0.89106 0.92441 0.91185 0.87962 0.87029 0.80049 0.81808 0.76990 0.93424 0.92807 0.91899 0.93071 0.93607 0.95012 0.93757 0.95566 0.90527 0.92575 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.83 10.70 -35.23 -0.38 -3.21 16 3 C 0.05 0.34 6.04 37.16 0.22 0.57 16 4 C 0.13 0.79 6.77 -4.04 -0.03 0.76 16 5 N -0.29 -2.77 3.41 -61.33 -0.21 -2.97 16 6 C -0.02 -0.16 11.40 -17.17 -0.20 -0.36 16 7 C -0.18 -2.24 10.81 -39.36 -0.43 -2.66 16 8 C 0.00 -0.05 7.13 -82.76 -0.59 -0.64 16 9 C 0.59 10.81 7.64 -12.39 -0.09 10.72 16 10 O -0.52 -11.65 16.59 5.30 0.09 -11.57 16 11 N -0.71 -11.80 4.93 -56.05 -0.28 -12.08 16 12 C 0.15 2.92 2.06 -69.21 -0.14 2.78 16 13 H 0.10 2.43 6.92 -51.93 -0.36 2.07 16 14 C -0.11 -1.73 4.70 -29.78 -0.14 -1.87 16 15 C -0.14 -2.57 5.74 -28.59 -0.16 -2.73 16 16 C 0.16 3.29 5.65 -4.09 -0.02 3.27 16 17 N -0.59 -14.97 2.26 -171.88 -0.39 -15.36 16 18 C -0.26 -7.27 9.43 -15.06 -0.14 -7.41 16 19 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 20 C 0.01 0.21 4.83 -17.43 -0.08 0.12 16 21 N -0.90 -27.17 11.12 55.49 0.62 -26.55 16 22 Si 0.90 22.85 29.59 -169.99 -5.03 17.82 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.18 4.60 4.71 -2.76 -0.01 4.59 16 27 C -0.15 -2.99 5.39 -27.12 -0.15 -3.14 16 28 N -0.27 -3.37 11.36 33.42 0.38 -2.99 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.41 8.04 -51.93 -0.42 0.00 16 36 H 0.18 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 38 H 0.40 5.51 8.33 -40.82 -0.34 5.17 16 39 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 40 H 0.05 0.81 7.35 -51.93 -0.38 0.43 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16 44 H 0.03 0.63 8.06 -51.93 -0.42 0.21 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 47 H 0.08 2.22 6.39 -51.93 -0.33 1.88 16 48 H 0.06 1.16 7.85 -51.92 -0.41 0.75 16 49 H 0.05 0.86 7.31 -51.93 -0.38 0.48 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -34.66 396.28 -8.13 -42.79 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.06 Total: 2.87 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -0.85 Total: 5.28 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.12 Total: -59.96 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.29 Total: -14.78 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.66 -8.13 -42.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052550657.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.032 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds