Wall clock time and date at job start Tue Mar 31 2020 19:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99819 * 2 1 4 4 C 1.53002 * 109.46818 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47170 * 180.02562 * 4 3 2 6 6 C 1.35033 * 124.88384 * 125.02064 * 5 4 3 7 7 C 1.35362 * 107.22887 * 179.72875 * 6 5 4 8 8 C 1.41505 * 105.50110 * 0.41677 * 7 6 5 9 9 C 1.47711 * 126.51693 * 179.83919 * 8 7 6 10 10 O 1.21572 * 120.00173 * 359.71990 * 9 8 7 11 11 N 1.34775 * 120.00018 * 179.71488 * 9 8 7 12 12 C 1.46502 * 119.99961 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.49184 * 325.04165 * 12 11 9 14 14 C 1.52576 * 109.48705 * 205.00009 * 12 11 9 15 15 C 1.47090 * 114.32498 * 155.02300 * 14 12 11 16 16 C 1.54860 * 110.32374 * 62.79675 * 15 14 12 17 17 N 1.44575 * 109.60592 * 288.73620 * 16 15 14 18 18 C 1.36935 * 118.64242 * 270.70972 * 17 16 15 19 19 H 1.08002 * 120.00415 * 27.23781 * 18 17 16 20 20 C 1.38815 * 120.00137 * 206.96980 * 18 17 16 21 21 N 1.31620 * 119.99298 * 17.02045 * 20 18 17 22 22 Si 1.86791 * 120.00118 * 197.02174 * 20 18 17 23 23 H 1.48500 * 109.47253 * 90.00232 * 22 20 18 24 24 H 1.48502 * 109.47293 * 209.99654 * 22 20 18 25 25 H 1.48498 * 109.47439 * 329.99788 * 22 20 18 26 26 C 1.47605 * 122.71592 * 90.97965 * 17 16 15 27 27 C 1.50877 * 109.49263 * 85.11581 * 12 11 9 28 28 N 1.28464 * 124.88333 * 305.02821 * 5 4 3 29 29 H 1.08995 * 109.47167 * 299.99551 * 1 2 3 30 30 H 1.09000 * 109.47105 * 59.99628 * 1 2 3 31 31 H 1.08993 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46824 * 60.00626 * 3 2 1 33 33 H 1.08994 * 109.47356 * 299.99696 * 3 2 1 34 34 H 1.08996 * 109.47388 * 60.00119 * 4 3 2 35 35 H 1.09007 * 109.47294 * 300.00498 * 4 3 2 36 36 H 1.08005 * 126.38720 * 0.02562 * 6 5 4 37 37 H 1.08001 * 127.25438 * 180.26189 * 7 6 5 38 38 H 0.96997 * 120.00026 * 359.97438 * 11 9 8 39 39 H 1.09002 * 108.51087 * 33.76428 * 14 12 11 40 40 H 1.09001 * 108.38461 * 276.18839 * 14 12 11 41 41 H 1.08998 * 109.32303 * 302.53792 * 15 14 12 42 42 H 1.08998 * 109.18452 * 182.97207 * 15 14 12 43 43 H 1.08998 * 109.45004 * 168.69132 * 16 15 14 44 44 H 1.09004 * 109.44913 * 48.77621 * 16 15 14 45 45 H 0.97003 * 119.99220 * 179.97438 * 21 20 18 46 46 H 1.08996 * 108.94504 * 78.30134 * 26 17 16 47 47 H 1.08998 * 108.95095 * 196.93066 * 26 17 16 48 48 H 1.09008 * 109.36313 * 332.04027 * 27 12 11 49 49 H 1.08996 * 109.36870 * 91.65611 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0258 2.9697 0.9089 7 6 5.3400 4.2419 0.5697 8 6 4.5729 4.5258 -0.5850 9 6 4.5583 5.7951 -1.3404 10 8 5.2510 6.7262 -0.9780 11 7 3.7772 5.9210 -2.4314 12 6 3.7632 7.1797 -3.1810 13 1 3.8783 8.0153 -2.4907 14 6 2.4385 7.3137 -3.9260 15 6 2.0485 8.7003 -4.2240 16 6 3.0861 9.3605 -5.1651 17 7 4.3126 9.6049 -4.4396 18 6 4.4594 10.7965 -3.7812 19 1 3.5889 11.3289 -3.4273 20 6 5.7275 11.3177 -3.5636 21 7 6.7515 10.8684 -4.2578 22 14 5.9805 12.6563 -2.2856 23 1 6.2812 12.0350 -0.9708 24 1 7.1150 13.5230 -2.6944 25 1 4.7466 13.4752 -2.1755 26 6 5.4154 8.6254 -4.3842 27 6 4.8987 7.1867 -4.1745 28 7 3.8781 3.4404 -0.8615 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8575 0.6436 -0.8891 35 1 3.8568 0.6438 0.8909 36 1 5.4209 2.4138 1.7464 37 1 6.0290 4.9022 1.0754 38 1 3.2249 5.1780 -2.7209 39 1 1.6545 6.8555 -3.3231 40 1 2.5155 6.7663 -4.8655 41 1 1.9926 9.2669 -3.2945 42 1 1.0713 8.7017 -4.7068 43 1 2.6897 10.3054 -5.5365 44 1 3.2879 8.6965 -6.0057 45 1 7.6376 11.2329 -4.1060 46 1 5.9765 8.6711 -5.3175 47 1 6.0799 8.8866 -3.5606 48 1 5.7101 6.5622 -3.8004 49 1 4.5483 6.7888 -5.1267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052550657.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:25 Heat of formation + Delta-G solvation = 1.580250 kcal Electronic energy + Delta-G solvation = -29508.102753 eV Core-core repulsion = 25472.124727 eV Total energy + Delta-G solvation = -4035.978026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.69091 -40.90360 -39.15877 -38.94511 -36.32621 -35.01428 -34.46618 -32.72442 -32.34899 -31.58136 -30.41422 -27.94567 -27.30956 -26.06035 -25.20495 -24.73534 -23.17598 -22.40130 -21.62097 -21.09516 -20.74425 -18.91288 -18.53795 -17.95914 -17.41097 -17.38456 -17.02499 -16.75912 -16.63376 -16.14886 -15.94248 -15.59158 -15.39961 -15.16810 -14.85573 -14.75294 -14.46403 -14.24334 -14.02882 -13.94706 -13.62919 -13.27030 -13.01526 -12.99825 -12.76418 -12.62609 -12.51722 -12.32927 -12.14787 -12.01472 -11.94631 -11.74721 -11.52363 -11.42242 -11.33870 -11.14199 -10.77030 -10.43372 -10.35487 -10.14933 -9.97950 -8.63544 -7.84733 -5.29899 0.49032 1.15681 1.31699 1.41234 1.47465 1.52257 2.16912 2.37601 2.51681 2.78891 3.29379 3.36379 3.69107 3.75813 3.81705 3.83396 3.97091 4.07764 4.14512 4.22571 4.38823 4.46245 4.46502 4.47600 4.49161 4.62879 4.66601 4.68520 4.73453 4.74581 4.83936 4.85234 4.94273 5.01363 5.15151 5.21465 5.24405 5.30129 5.35139 5.50470 5.58569 5.63427 5.70492 5.76868 5.80479 6.01896 6.42946 6.48983 6.87948 7.19712 7.24502 7.97547 8.36413 9.20426 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.002597 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.224578 B =10777.436898 C =11780.199772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.275 5.275 6 C 0.013 3.987 7 C -0.207 4.207 8 C -0.037 4.037 9 C 0.591 3.409 10 O -0.576 6.576 11 N -0.700 5.700 12 C 0.163 3.837 13 H 0.053 0.947 14 C -0.102 4.102 15 C -0.132 4.132 16 C 0.148 3.852 17 N -0.604 5.604 18 C -0.259 4.259 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.956 3.044 23 H -0.296 1.296 24 H -0.292 1.292 25 H -0.263 1.263 26 C 0.196 3.804 27 C -0.131 4.131 28 N -0.268 5.268 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.148 0.852 36 H 0.233 0.767 37 H 0.157 0.843 38 H 0.413 0.587 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.091 0.909 43 H 0.040 0.960 44 H 0.048 0.952 45 H 0.247 0.753 46 H 0.000 1.000 47 H 0.027 0.973 48 H 0.045 0.955 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.830 -26.952 9.284 31.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.025 4.025 4 C 0.002 3.998 5 N -0.065 5.065 6 C -0.130 4.130 7 C -0.236 4.236 8 C -0.196 4.196 9 C 0.376 3.624 10 O -0.453 6.453 11 N -0.351 5.351 12 C 0.059 3.941 13 H 0.072 0.928 14 C -0.140 4.140 15 C -0.172 4.172 16 C 0.022 3.978 17 N -0.326 5.326 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.785 3.215 23 H -0.224 1.224 24 H -0.218 1.218 25 H -0.188 1.188 26 C 0.070 3.930 27 C -0.171 4.171 28 N -0.105 5.105 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.165 0.835 36 H 0.249 0.751 37 H 0.175 0.825 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.018 0.982 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.941 -26.976 8.731 31.168 hybrid contribution 0.993 1.474 0.996 2.038 sum -11.948 -25.502 9.727 29.795 Atomic orbital electron populations 1.22966 0.78757 1.04284 1.00907 1.87748 1.21879 1.26728 1.95682 1.22577 0.92635 0.85484 1.01819 1.22000 0.92508 0.76904 1.08354 1.45666 1.30809 1.11825 1.18236 1.23464 0.95908 0.95286 0.98294 1.22017 1.05152 0.97893 0.98494 1.21791 1.03517 0.93610 1.00662 1.17403 0.79381 0.85427 0.80147 1.90849 1.43712 1.41153 1.69579 1.45944 1.44890 1.16877 1.27343 1.20244 0.96251 0.84803 0.92827 0.92842 1.20522 0.94469 0.98495 1.00519 1.21291 0.99813 0.95644 1.00447 1.20954 0.86072 0.97980 0.92841 1.43849 1.15561 1.14656 1.58535 1.19469 0.92141 0.98641 1.28758 0.91694 1.25740 0.96833 1.00924 1.01145 1.70213 0.99637 1.46721 1.41494 0.85421 0.77656 0.79196 0.79203 1.22395 1.21803 1.18761 1.20642 0.88913 0.85909 0.97505 1.22291 0.97911 0.97793 0.99123 1.73390 1.22837 0.97637 1.16666 0.93146 0.93445 0.87715 0.92393 0.92513 0.87154 0.83452 0.75108 0.82494 0.74996 0.90563 0.90194 0.94315 0.89038 0.94126 0.93347 0.94438 0.98228 0.95464 0.93581 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -4.73 10.70 -148.98 -1.59 -6.33 16 3 C 0.05 0.58 6.04 71.98 0.43 1.01 16 4 C 0.12 1.06 6.77 86.38 0.58 1.64 16 5 N -0.28 -4.47 3.41 -347.94 -1.19 -5.66 16 6 C 0.01 0.19 11.40 83.54 0.95 1.15 16 7 C -0.21 -5.13 10.81 22.41 0.24 -4.89 16 8 C -0.04 -1.10 7.13 42.46 0.30 -0.80 16 9 C 0.59 22.33 7.64 86.75 0.66 22.99 16 10 O -0.58 -27.82 16.59 -3.94 -0.07 -27.89 16 11 N -0.70 -23.04 4.93 -449.51 -2.22 -25.25 16 12 C 0.16 6.20 2.06 44.16 0.09 6.29 16 13 H 0.05 2.62 6.92 -2.39 -0.02 2.61 16 14 C -0.10 -3.05 4.70 28.62 0.13 -2.91 16 15 C -0.13 -4.37 5.74 29.39 0.17 -4.20 16 16 C 0.15 6.08 5.65 87.37 0.49 6.57 16 17 N -0.60 -31.49 2.26 -697.70 -1.58 -33.06 16 18 C -0.26 -15.07 9.43 84.03 0.79 -14.28 16 19 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 20 C -0.05 -3.08 4.83 84.86 0.41 -2.67 16 21 N -0.93 -59.29 11.12 21.65 0.24 -59.05 16 22 Si 0.96 48.86 29.59 68.60 2.03 50.89 16 23 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 24 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.20 10.39 4.71 86.61 0.41 10.80 16 27 C -0.13 -5.44 5.39 30.34 0.16 -5.28 16 28 N -0.27 -6.35 11.36 -48.17 -0.55 -6.90 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.15 0.30 8.04 -2.38 -0.02 0.28 16 36 H 0.23 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.41 10.80 8.33 -92.71 -0.77 10.03 16 39 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 40 H 0.08 2.04 7.35 -2.39 -0.02 2.03 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 43 H 0.04 1.69 7.99 -2.39 -0.02 1.67 16 44 H 0.05 1.83 8.06 -2.38 -0.02 1.81 16 45 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.00 -0.02 8.03 -2.39 -0.02 -0.04 16 47 H 0.03 1.68 6.39 -2.39 -0.02 1.67 16 48 H 0.05 1.98 7.85 -2.38 -0.02 1.96 16 49 H 0.07 2.68 7.31 -2.39 -0.02 2.66 16 Total: -1.00 -82.63 396.28 2.35 -80.28 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.17 Total: 16.09 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 7.09 Total: 16.88 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.28 Total: -129.92 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.66 Total: -34.21 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.89 kcal Total: -82.63 2.35 -80.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052550657.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.861 kcal (2) G-P(sol) polarization free energy of solvation -82.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds