Wall clock time and date at job start Tue Mar 31 2020 19:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 C 1.50701 * 109.47489 * 120.00404 * 2 1 3 5 5 N 1.31072 * 126.65557 * 300.02572 * 4 2 1 6 6 N 1.28841 * 107.99134 * 179.97438 * 5 4 2 7 7 N 1.28743 * 109.39660 * 359.97438 * 6 5 4 8 8 N 1.29024 * 108.80682 * 359.74590 * 7 6 5 9 9 C 1.46501 * 126.43927 * 180.24876 * 8 7 6 10 10 C 1.50703 * 109.47091 * 270.17935 * 9 8 7 11 11 O 1.21277 * 120.00000 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99818 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99879 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.20680 * 35.64456 * 13 12 10 15 15 C 1.50122 * 109.21240 * 155.00069 * 13 12 10 16 16 C 1.52521 * 105.42427 * 218.03180 * 15 13 12 17 17 C 1.46238 * 114.27690 * 270.59425 * 16 15 13 18 18 N 1.50178 * 107.53132 * 58.40479 * 17 16 15 19 19 C 1.36937 * 120.53755 * 109.56783 * 18 17 16 20 20 H 1.08006 * 119.99782 * 156.70530 * 19 18 17 21 21 C 1.38808 * 120.00180 * 336.70491 * 19 18 17 22 22 N 1.31624 * 120.00106 * 340.40791 * 21 19 18 23 23 Si 1.86797 * 119.99905 * 160.40124 * 21 19 18 24 24 H 1.48502 * 109.47280 * 90.00461 * 23 21 19 25 25 H 1.48502 * 109.47219 * 210.00112 * 23 21 19 26 26 H 1.48498 * 109.47297 * 330.00010 * 23 21 19 27 27 C 1.43434 * 118.92100 * 289.58681 * 18 17 16 28 28 C 1.54841 * 109.21207 * 276.32929 * 13 12 10 29 29 H 1.08997 * 109.46819 * 299.99946 * 1 2 3 30 30 H 1.09000 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47116 * 59.99740 * 1 2 3 32 32 H 1.09011 * 109.47327 * 240.00103 * 2 1 3 33 33 H 1.08997 * 109.47157 * 60.00261 * 3 2 1 34 34 H 1.09009 * 109.47136 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47345 * 299.99824 * 3 2 1 36 36 H 1.09000 * 109.46953 * 30.17549 * 9 8 7 37 37 H 1.09003 * 109.47150 * 150.17543 * 9 8 7 38 38 H 0.96998 * 119.99996 * 0.02562 * 12 10 9 39 39 H 1.09000 * 110.24689 * 337.00175 * 15 13 12 40 40 H 1.09000 * 110.24883 * 99.04955 * 15 13 12 41 41 H 1.09002 * 108.52089 * 31.83118 * 16 15 13 42 42 H 1.08996 * 108.52747 * 149.50731 * 16 15 13 43 43 H 1.09002 * 109.84921 * 177.91024 * 17 16 15 44 44 H 1.08996 * 109.85029 * 298.83226 * 17 16 15 45 45 H 0.96991 * 119.99717 * 179.97438 * 22 21 19 46 46 H 1.09004 * 108.15703 * 213.28484 * 27 18 17 47 47 H 1.09002 * 108.16306 * 330.06396 * 27 18 17 48 48 H 1.09000 * 109.35606 * 320.98806 * 28 13 12 49 49 H 1.09002 * 109.36372 * 80.58375 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7972 -0.3787 2.4764 6 7 2.3982 -1.2293 3.2349 7 7 3.0103 -2.0954 2.5050 8 7 2.8040 -1.8128 1.2631 9 6 3.3168 -2.5507 0.1061 10 6 4.6564 -1.9885 -0.2948 11 8 5.1353 -1.0624 0.3247 12 7 5.3221 -2.5149 -1.3417 13 6 6.6240 -1.9681 -1.7317 14 1 7.1677 -1.6638 -0.8373 15 6 7.4092 -3.0267 -2.4505 16 6 8.8517 -2.8449 -1.9896 17 6 9.6322 -1.9180 -2.8082 18 7 8.9303 -0.5906 -2.7825 19 6 9.4739 0.4710 -2.1096 20 1 9.2017 1.4799 -2.3825 21 6 10.3746 0.2504 -1.0767 22 7 10.4227 -0.9245 -0.4852 23 14 11.5185 1.6207 -0.5265 24 1 10.8635 2.4115 0.5464 25 1 12.7806 1.0340 -0.0086 26 1 11.8209 2.5061 -1.6796 27 6 7.6812 -0.4529 -3.4740 28 6 6.4065 -0.7327 -2.6395 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 3.4278 -3.6033 0.3665 37 1 2.6185 -2.4537 -0.7253 38 1 4.9389 -3.2554 -1.8374 39 1 7.0472 -4.0172 -2.1750 40 1 7.3367 -2.8834 -3.5286 41 1 8.8436 -2.4780 -0.9633 42 1 9.3452 -3.8167 -2.0048 43 1 10.6356 -1.8141 -2.3951 44 1 9.6902 -2.2872 -3.8321 45 1 11.0524 -1.0787 0.2363 46 1 7.6175 0.5641 -3.8610 47 1 7.6853 -1.1372 -4.3224 48 1 5.5690 -0.9210 -3.3113 49 1 6.1823 0.1358 -2.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052774954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:23 Heat of formation + Delta-G solvation = 106.467795 kcal Electronic energy + Delta-G solvation = -30671.594238 eV Core-core repulsion = 26672.457229 eV Total energy + Delta-G solvation = -3999.137009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -44.22427 -39.99071 -37.92534 -36.36382 -35.46859 -34.80322 -32.50672 -31.67827 -31.53358 -30.38979 -28.82609 -27.48331 -26.20349 -24.53053 -24.23348 -23.66698 -22.78715 -21.12661 -20.65109 -20.01930 -19.27594 -17.91571 -17.80862 -16.75111 -16.27567 -16.08736 -15.50542 -15.38005 -15.00411 -14.75004 -14.38220 -13.99598 -13.80573 -13.52805 -13.44867 -13.27670 -12.91423 -12.58127 -12.47823 -12.34073 -12.22108 -11.98716 -11.89542 -11.61367 -11.57463 -11.43636 -11.36518 -11.29505 -11.03048 -10.82328 -10.73839 -10.45880 -10.37873 -10.16987 -10.06504 -9.84695 -9.67807 -9.58546 -9.42639 -8.82424 -8.43489 -6.75539 -5.81392 -3.20246 1.13694 1.73398 2.24895 2.42249 3.08873 3.39346 3.47124 3.48218 3.70132 3.96602 4.22665 4.40101 4.48413 4.51146 4.67435 4.79760 4.95869 5.25216 5.31415 5.33741 5.34925 5.43878 5.43994 5.56737 5.59051 5.61925 5.66648 5.72118 5.88019 5.88730 6.00648 6.06737 6.12074 6.15990 6.29680 6.34181 6.56976 6.69515 6.78567 6.84391 6.87525 6.96068 7.12871 7.48955 7.53687 7.71983 7.91915 8.13719 8.40367 8.59801 9.16783 9.84258 10.35623 11.26492 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.003256 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.869283 B = 8597.273024 C = 9069.251455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.202 3.798 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.084 5.084 8 N -0.292 5.292 9 C 0.090 3.910 10 C 0.492 3.508 11 O -0.507 6.507 12 N -0.717 5.717 13 C 0.156 3.844 14 H 0.104 0.896 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.164 3.836 18 N -0.588 5.588 19 C -0.252 4.252 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.162 3.838 28 C -0.151 4.151 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.394 0.606 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.031 0.969 43 H 0.091 0.909 44 H 0.007 0.993 45 H 0.253 0.747 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.045 0.955 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.278 -6.393 -6.818 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.076 4.076 5 N -0.150 5.150 6 N -0.069 5.069 7 N -0.070 5.070 8 N -0.093 5.093 9 C -0.036 4.036 10 C 0.273 3.727 11 O -0.381 6.381 12 N -0.369 5.369 13 C 0.054 3.946 14 H 0.122 0.878 15 C -0.159 4.159 16 C -0.169 4.169 17 C 0.041 3.959 18 N -0.309 5.309 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.729 3.271 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.032 3.968 28 C -0.193 4.193 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.228 0.772 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.050 0.950 43 H 0.109 0.891 44 H 0.025 0.975 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.064 0.936 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.630 -5.916 -4.783 19.202 hybrid contribution 0.440 0.102 -0.706 0.838 sum -17.190 -5.814 -5.489 18.958 Atomic orbital electron populations 1.21848 0.92064 1.02511 1.03677 1.19781 0.97116 0.96727 0.89528 1.21836 1.02369 0.92854 1.03280 1.26057 0.95041 0.88552 0.97973 1.74927 1.20891 1.20831 0.98345 1.78592 1.06772 0.99073 1.22432 1.78891 1.18726 1.22133 0.87229 1.47850 1.33824 1.20752 1.06856 1.22064 0.96798 0.98587 0.86179 1.20218 0.86133 0.84509 0.81841 1.90889 1.67354 1.27563 1.52299 1.46442 1.22560 1.36628 1.31260 1.21400 0.80134 0.93248 0.99848 0.87788 1.21367 0.98122 0.96339 1.00040 1.20936 0.92328 0.98373 1.05282 1.20172 0.98297 0.83683 0.93768 1.44271 1.16986 1.09514 1.60137 1.19172 1.21663 0.86700 1.10623 0.91527 1.24874 1.01684 0.96781 0.95935 1.69938 1.37742 1.22583 1.24178 0.86354 0.80679 0.81705 0.78403 1.21497 1.21594 1.20598 1.20350 0.85357 0.98224 0.92849 1.23323 0.99974 0.97325 0.98715 0.90951 0.92504 0.90808 0.89212 0.91099 0.91574 0.90912 0.84242 0.84669 0.77228 0.92716 0.91672 0.87891 0.95031 0.89087 0.97501 0.93698 0.94739 0.95263 0.93610 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.18 37.15 0.34 -0.63 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.15 -1.45 9.18 37.16 0.34 -1.11 16 4 C 0.20 2.64 6.64 -155.43 -1.03 1.60 16 5 N -0.30 -4.80 12.36 32.70 0.40 -4.40 16 6 N -0.08 -1.32 13.43 60.35 0.81 -0.51 16 7 N -0.08 -1.39 13.29 60.35 0.80 -0.58 16 8 N -0.29 -3.86 2.83 -59.44 -0.17 -4.03 16 9 C 0.09 0.80 6.56 -5.19 -0.03 0.76 16 10 C 0.49 6.73 7.85 -10.98 -0.09 6.64 16 11 O -0.51 -10.19 16.10 5.56 0.09 -10.10 16 12 N -0.72 -8.72 4.97 -54.26 -0.27 -8.99 16 13 C 0.16 2.64 2.22 -68.39 -0.15 2.49 16 14 H 0.10 2.41 6.27 -51.93 -0.33 2.08 16 15 C -0.12 -1.88 5.34 -28.41 -0.15 -2.03 16 16 C -0.13 -2.58 5.02 -30.19 -0.15 -2.73 16 17 C 0.16 3.61 5.24 -5.20 -0.03 3.58 16 18 N -0.59 -13.78 2.60 -175.07 -0.46 -14.23 16 19 C -0.25 -6.72 9.63 -15.06 -0.14 -6.87 16 20 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 21 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 22 N -0.90 -24.80 9.43 55.49 0.52 -24.28 16 23 Si 0.90 21.77 29.60 -169.99 -5.03 16.74 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 C 0.16 3.16 5.18 -4.66 -0.02 3.14 16 28 C -0.15 -2.63 5.98 -24.76 -0.15 -2.78 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.62 6.85 -51.92 -0.36 0.26 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.14 0.56 7.13 -51.93 -0.37 0.19 16 38 H 0.39 3.02 8.48 -40.82 -0.35 2.68 16 39 H 0.05 0.71 7.85 -51.93 -0.41 0.30 16 40 H 0.06 0.96 6.28 -51.93 -0.33 0.64 16 41 H 0.10 2.47 5.29 -51.93 -0.27 2.20 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 2.28 6.05 -51.93 -0.31 1.96 16 44 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.03 0.68 7.99 -51.93 -0.41 0.27 16 47 H 0.03 0.51 6.88 -51.93 -0.36 0.15 16 48 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 49 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -34.89 386.90 -6.81 -41.70 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.69 Total: 1.11 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.65 Total: 1.75 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 1.65 Total: -57.03 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.89 -6.81 -41.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052774954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.164 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds