Wall clock time and date at job start Tue Mar 31 2020 19:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 C 1.50701 * 109.47489 * 120.00404 * 2 1 3 5 5 N 1.31072 * 126.65557 * 300.02572 * 4 2 1 6 6 N 1.28841 * 107.99134 * 179.97438 * 5 4 2 7 7 N 1.28743 * 109.39660 * 359.97438 * 6 5 4 8 8 N 1.29024 * 108.80682 * 359.74590 * 7 6 5 9 9 C 1.46501 * 126.43927 * 180.24876 * 8 7 6 10 10 C 1.50703 * 109.47091 * 270.17935 * 9 8 7 11 11 O 1.21277 * 120.00000 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99818 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99879 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.20680 * 35.64456 * 13 12 10 15 15 C 1.50122 * 109.21240 * 155.00069 * 13 12 10 16 16 C 1.52521 * 105.42427 * 218.03180 * 15 13 12 17 17 C 1.46238 * 114.27690 * 270.59425 * 16 15 13 18 18 N 1.50178 * 107.53132 * 58.40479 * 17 16 15 19 19 C 1.36937 * 120.53755 * 109.56783 * 18 17 16 20 20 H 1.08006 * 119.99782 * 156.70530 * 19 18 17 21 21 C 1.38808 * 120.00180 * 336.70491 * 19 18 17 22 22 N 1.31624 * 120.00106 * 340.40791 * 21 19 18 23 23 Si 1.86797 * 119.99905 * 160.40124 * 21 19 18 24 24 H 1.48502 * 109.47280 * 90.00461 * 23 21 19 25 25 H 1.48502 * 109.47219 * 210.00112 * 23 21 19 26 26 H 1.48498 * 109.47297 * 330.00010 * 23 21 19 27 27 C 1.43434 * 118.92100 * 289.58681 * 18 17 16 28 28 C 1.54841 * 109.21207 * 276.32929 * 13 12 10 29 29 H 1.08997 * 109.46819 * 299.99946 * 1 2 3 30 30 H 1.09000 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47116 * 59.99740 * 1 2 3 32 32 H 1.09011 * 109.47327 * 240.00103 * 2 1 3 33 33 H 1.08997 * 109.47157 * 60.00261 * 3 2 1 34 34 H 1.09009 * 109.47136 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47345 * 299.99824 * 3 2 1 36 36 H 1.09000 * 109.46953 * 30.17549 * 9 8 7 37 37 H 1.09003 * 109.47150 * 150.17543 * 9 8 7 38 38 H 0.96998 * 119.99996 * 0.02562 * 12 10 9 39 39 H 1.09000 * 110.24689 * 337.00175 * 15 13 12 40 40 H 1.09000 * 110.24883 * 99.04955 * 15 13 12 41 41 H 1.09002 * 108.52089 * 31.83118 * 16 15 13 42 42 H 1.08996 * 108.52747 * 149.50731 * 16 15 13 43 43 H 1.09002 * 109.84921 * 177.91024 * 17 16 15 44 44 H 1.08996 * 109.85029 * 298.83226 * 17 16 15 45 45 H 0.96991 * 119.99717 * 179.97438 * 22 21 19 46 46 H 1.09004 * 108.15703 * 213.28484 * 27 18 17 47 47 H 1.09002 * 108.16306 * 330.06396 * 27 18 17 48 48 H 1.09000 * 109.35606 * 320.98806 * 28 13 12 49 49 H 1.09002 * 109.36372 * 80.58375 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7972 -0.3787 2.4764 6 7 2.3982 -1.2293 3.2349 7 7 3.0103 -2.0954 2.5050 8 7 2.8040 -1.8128 1.2631 9 6 3.3168 -2.5507 0.1061 10 6 4.6564 -1.9885 -0.2948 11 8 5.1353 -1.0624 0.3247 12 7 5.3221 -2.5149 -1.3417 13 6 6.6240 -1.9681 -1.7317 14 1 7.1677 -1.6638 -0.8373 15 6 7.4092 -3.0267 -2.4505 16 6 8.8517 -2.8449 -1.9896 17 6 9.6322 -1.9180 -2.8082 18 7 8.9303 -0.5906 -2.7825 19 6 9.4739 0.4710 -2.1096 20 1 9.2017 1.4799 -2.3825 21 6 10.3746 0.2504 -1.0767 22 7 10.4227 -0.9245 -0.4852 23 14 11.5185 1.6207 -0.5265 24 1 10.8635 2.4115 0.5464 25 1 12.7806 1.0340 -0.0086 26 1 11.8209 2.5061 -1.6796 27 6 7.6812 -0.4529 -3.4740 28 6 6.4065 -0.7327 -2.6395 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 3.4278 -3.6033 0.3665 37 1 2.6185 -2.4537 -0.7253 38 1 4.9389 -3.2554 -1.8374 39 1 7.0472 -4.0172 -2.1750 40 1 7.3367 -2.8834 -3.5286 41 1 8.8436 -2.4780 -0.9633 42 1 9.3452 -3.8167 -2.0048 43 1 10.6356 -1.8141 -2.3951 44 1 9.6902 -2.2872 -3.8321 45 1 11.0524 -1.0787 0.2363 46 1 7.6175 0.5641 -3.8610 47 1 7.6853 -1.1372 -4.3224 48 1 5.5690 -0.9210 -3.3113 49 1 6.1823 0.1358 -2.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052774954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:21 Heat of formation + Delta-G solvation = 80.719907 kcal Electronic energy + Delta-G solvation = -30672.710750 eV Core-core repulsion = 26672.457229 eV Total energy + Delta-G solvation = -4000.253522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -45.30577 -41.19581 -39.41074 -37.19302 -36.58087 -36.21559 -34.12922 -33.31126 -32.61562 -31.90860 -29.92303 -28.13022 -27.90065 -25.75855 -25.50186 -25.13641 -24.11926 -22.25240 -21.80079 -21.32429 -20.79625 -18.97496 -18.86676 -18.51764 -17.39221 -17.15565 -16.90968 -16.60105 -16.40018 -15.89326 -15.64611 -15.51904 -15.11079 -15.03746 -14.47018 -14.21213 -14.12951 -13.93916 -13.77553 -13.50379 -13.26269 -13.24127 -13.11444 -13.09656 -12.72683 -12.70700 -12.51295 -12.39610 -12.32539 -12.29652 -12.14401 -11.97441 -11.91030 -11.76125 -11.58184 -11.20469 -11.17760 -11.11880 -10.87483 -10.46623 -10.04536 -8.64909 -7.86287 -5.24882 0.07830 0.86221 1.11790 1.39312 1.40537 1.43803 1.51198 2.07378 2.51085 2.86908 3.14588 3.27733 3.47598 3.60945 3.63168 3.88452 4.00063 4.03598 4.04505 4.12768 4.18217 4.33343 4.36509 4.51394 4.63289 4.65455 4.75092 4.75634 4.80459 4.87529 4.90205 4.91027 4.94494 5.07763 5.13691 5.19481 5.25179 5.29067 5.30723 5.35739 5.40214 5.52030 5.64981 5.65753 5.79167 6.21624 6.40582 6.47169 7.17859 7.19135 7.46538 7.92829 8.39001 9.17534 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.003256 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.869283 B = 8597.273024 C = 9069.251455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.208 3.792 5 N -0.330 5.330 6 N -0.110 5.110 7 N -0.106 5.106 8 N -0.291 5.291 9 C 0.091 3.909 10 C 0.489 3.511 11 O -0.582 6.582 12 N -0.695 5.695 13 C 0.169 3.831 14 H 0.033 0.967 15 C -0.105 4.105 16 C -0.125 4.125 17 C 0.166 3.834 18 N -0.603 5.603 19 C -0.259 4.259 20 H 0.057 0.943 21 C -0.043 4.043 22 N -0.915 5.915 23 Si 0.948 3.052 24 H -0.299 1.299 25 H -0.290 1.290 26 H -0.270 1.270 27 C 0.153 3.847 28 C -0.138 4.138 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.104 0.896 36 H 0.176 0.824 37 H 0.198 0.802 38 H 0.424 0.576 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.244 0.756 46 H 0.025 0.975 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.065 -8.483 -10.454 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.070 4.070 5 N -0.179 5.179 6 N -0.103 5.103 7 N -0.092 5.092 8 N -0.092 5.092 9 C -0.033 4.033 10 C 0.274 3.726 11 O -0.460 6.460 12 N -0.349 5.349 13 C 0.065 3.935 14 H 0.052 0.948 15 C -0.143 4.143 16 C -0.165 4.165 17 C 0.043 3.957 18 N -0.325 5.325 19 C -0.390 4.390 20 H 0.075 0.925 21 C -0.239 4.239 22 N -0.561 5.561 23 Si 0.778 3.222 24 H -0.227 1.227 25 H -0.217 1.217 26 H -0.195 1.195 27 C 0.025 3.975 28 C -0.180 4.180 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.122 0.878 36 H 0.194 0.806 37 H 0.215 0.785 38 H 0.263 0.737 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.081 0.919 48 H 0.111 0.889 49 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -20.454 -8.063 -8.481 23.564 hybrid contribution 1.318 0.787 0.338 1.572 sum -19.136 -7.276 -8.143 22.032 Atomic orbital electron populations 1.21841 0.89878 1.03555 1.04193 1.20124 0.98736 0.95546 0.88699 1.21824 0.99923 0.94232 1.04189 1.26833 0.93804 0.88070 0.98339 1.74829 1.21908 1.21329 0.99861 1.78540 1.08015 1.00048 1.23743 1.78768 1.19059 1.22591 0.88805 1.48132 1.33261 1.20996 1.06792 1.22581 0.94799 0.99311 0.86605 1.21032 0.87428 0.83275 0.80892 1.90890 1.69501 1.31048 1.54597 1.46041 1.20744 1.36925 1.31149 1.20815 0.81911 0.93906 0.96913 0.94840 1.21273 0.94470 0.97567 1.00953 1.20752 0.95407 0.98057 1.02240 1.20124 0.96681 0.83685 0.95252 1.44427 1.18872 1.09273 1.59952 1.19350 1.21645 0.87510 1.10452 0.92511 1.25455 1.03263 0.98509 0.96626 1.70123 1.37901 1.23681 1.24380 0.85574 0.79055 0.79779 0.77801 1.22696 1.21661 1.19544 1.20534 0.84634 0.98779 0.93550 1.23155 1.00302 0.96027 0.98542 0.92721 0.91203 0.88021 0.85900 0.92486 0.95232 0.87777 0.80627 0.78509 0.73700 0.89058 0.89282 0.92704 0.93700 0.93032 0.94639 0.94667 0.95649 0.91858 0.88896 0.96649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 71.98 0.66 -0.72 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -2.73 9.18 71.98 0.66 -2.07 16 4 C 0.21 5.19 6.64 138.13 0.92 6.11 16 5 N -0.33 -10.76 12.36 -50.45 -0.62 -11.38 16 6 N -0.11 -4.00 13.43 37.01 0.50 -3.50 16 7 N -0.11 -3.50 13.29 37.02 0.49 -3.01 16 8 N -0.29 -7.22 2.83 -341.97 -0.97 -8.19 16 9 C 0.09 1.23 6.56 85.63 0.56 1.79 16 10 C 0.49 12.41 7.85 87.66 0.69 13.10 16 11 O -0.58 -24.06 16.10 -3.02 -0.05 -24.11 16 12 N -0.70 -14.48 4.97 -443.96 -2.21 -16.69 16 13 C 0.17 5.47 2.22 44.69 0.10 5.57 16 14 H 0.03 1.61 6.27 -2.38 -0.01 1.60 16 15 C -0.10 -2.90 5.34 29.51 0.16 -2.74 16 16 C -0.13 -4.89 5.02 28.35 0.14 -4.75 16 17 C 0.17 7.25 5.24 83.58 0.44 7.69 16 18 N -0.60 -28.47 2.60 -707.79 -1.84 -30.31 16 19 C -0.26 -14.28 9.63 84.03 0.81 -13.47 16 20 H 0.06 3.16 7.89 -2.91 -0.02 3.14 16 21 C -0.04 -2.40 4.91 84.86 0.42 -1.98 16 22 N -0.91 -53.11 9.43 21.65 0.20 -52.91 16 23 Si 0.95 46.55 29.60 68.60 2.03 48.58 16 24 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 26 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 27 C 0.15 5.74 5.18 87.60 0.45 6.20 16 28 C -0.14 -4.58 5.98 31.87 0.19 -4.39 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.12 1.06 6.85 -2.38 -0.02 1.04 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.18 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.20 0.22 7.13 -2.39 -0.02 0.20 16 38 H 0.42 3.91 8.48 -92.71 -0.79 3.12 16 39 H 0.09 1.88 7.85 -2.39 -0.02 1.86 16 40 H 0.09 2.11 6.28 -2.39 -0.01 2.10 16 41 H 0.05 2.74 5.29 -2.39 -0.01 2.72 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 43 H 0.05 2.65 6.05 -2.39 -0.01 2.64 16 44 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 45 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.03 0.98 7.99 -2.38 -0.02 0.96 16 47 H 0.06 1.95 6.88 -2.39 -0.02 1.93 16 48 H 0.09 2.19 8.13 -2.39 -0.02 2.17 16 49 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -88.61 386.90 3.87 -84.73 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.18 Total: 6.64 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 6.16 Total: 10.14 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -4.45 Total: -125.99 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -88.61 3.87 -84.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052774954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.452 kcal (2) G-P(sol) polarization free energy of solvation -88.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds