Wall clock time and date at job start Tue Mar 31 2020 19:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00177 * 2 1 4 4 C 1.53003 * 109.47479 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.75229 * 125.00148 * 5 4 3 7 7 C 1.38047 * 107.41508 * 179.97438 * 6 5 4 8 8 C 1.47431 * 126.41454 * 179.97438 * 7 6 5 9 9 O 1.21604 * 119.99839 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00226 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99815 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.49588 * 325.04454 * 11 10 8 13 13 C 1.52567 * 109.48747 * 204.99815 * 11 10 8 14 14 C 1.47100 * 114.32638 * 155.00029 * 13 11 10 15 15 C 1.54867 * 110.31821 * 62.80448 * 14 13 11 16 16 N 1.44576 * 109.57815 * 288.74676 * 15 14 13 17 17 C 1.36936 * 118.64501 * 270.71540 * 16 15 14 18 18 H 1.07998 * 119.99825 * 26.54553 * 17 16 15 19 19 C 1.38816 * 120.00147 * 206.54702 * 17 16 15 20 20 N 1.31620 * 120.00010 * 15.71271 * 19 17 16 21 21 Si 1.86801 * 120.00173 * 195.70570 * 19 17 16 22 22 H 1.48498 * 109.46655 * 90.00102 * 21 19 17 23 23 H 1.48493 * 109.47402 * 210.00226 * 21 19 17 24 24 H 1.48497 * 109.46980 * 330.00537 * 21 19 17 25 25 C 1.47583 * 122.73176 * 90.76402 * 16 15 14 26 26 C 1.50880 * 109.50676 * 85.10617 * 11 10 8 27 27 C 1.41287 * 107.17266 * 0.22509 * 7 6 5 28 28 N 1.30452 * 108.02042 * 359.61915 * 27 7 6 29 29 H 1.08996 * 109.46793 * 60.00479 * 1 2 3 30 30 H 1.09000 * 109.46665 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47294 * 300.00226 * 1 2 3 32 32 H 1.09007 * 109.47292 * 59.99587 * 3 2 1 33 33 H 1.09004 * 109.47056 * 300.00141 * 3 2 1 34 34 H 1.08998 * 109.46558 * 59.99498 * 4 3 2 35 35 H 1.08997 * 109.46836 * 300.00063 * 4 3 2 36 36 H 1.07996 * 126.29191 * 359.97438 * 6 5 4 37 37 H 0.96995 * 120.00101 * 0.02562 * 10 8 7 38 38 H 1.09009 * 108.51355 * 33.75384 * 13 11 10 39 39 H 1.09000 * 108.51925 * 276.25679 * 13 11 10 40 40 H 1.09002 * 109.32725 * 302.54812 * 14 13 11 41 41 H 1.08994 * 109.18922 * 182.97739 * 14 13 11 42 42 H 1.09000 * 109.45067 * 48.76869 * 15 14 13 43 43 H 1.09000 * 109.44925 * 168.71914 * 15 14 13 44 44 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 45 45 H 1.09004 * 108.94507 * 197.15215 * 25 16 15 46 46 H 1.08999 * 108.89440 * 78.46204 * 25 16 15 47 47 H 1.08997 * 109.36857 * 332.05573 * 26 11 10 48 48 H 1.09005 * 109.36868 * 91.79468 * 26 11 10 49 49 H 1.08006 * 125.98949 * 179.73779 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0211 2.9859 0.8926 7 6 5.3270 4.2839 0.5358 8 6 6.2621 5.1859 1.2327 9 8 6.8507 4.8025 2.2253 10 7 6.4653 6.4350 0.7692 11 6 7.3941 7.3313 1.4621 12 1 7.3452 7.1469 2.5352 13 6 7.0112 8.7804 1.1768 14 6 7.4453 9.7360 2.2074 15 6 8.9909 9.7594 2.3022 16 7 9.4583 8.5290 2.9004 17 6 9.5819 8.4669 4.2628 18 1 8.9693 9.0977 4.8898 19 6 10.4945 7.5932 4.8378 20 7 11.4459 7.0576 4.1027 21 14 10.3726 7.1779 6.6550 22 1 9.4994 5.9901 6.8337 23 1 11.7269 6.8812 7.1869 24 1 9.7945 8.3322 7.3888 25 6 9.8088 7.3372 2.1037 26 6 8.7983 7.0792 0.9713 27 6 4.5719 4.5882 -0.6189 28 7 3.8697 3.5341 -0.9312 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6435 -0.8891 35 1 3.8568 0.6439 0.8908 36 1 5.4234 2.4428 1.7349 37 1 5.9961 6.7407 -0.0228 38 1 5.9267 8.8401 1.0843 39 1 7.4529 9.0741 0.2245 40 1 7.0292 9.4413 3.1708 41 1 7.0846 10.7312 1.9478 42 1 9.4144 9.8609 1.3030 43 1 9.3041 10.6036 2.9166 44 1 12.0839 6.4473 4.5046 45 1 9.8342 6.4675 2.7603 46 1 10.7980 7.4814 1.6693 47 1 8.8847 6.0448 0.6385 48 1 9.0150 7.7465 0.1370 49 1 4.5767 5.5280 -1.1510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052900969.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:40 Heat of formation + Delta-G solvation = 21.390179 kcal Electronic energy + Delta-G solvation = -29203.549418 eV Core-core repulsion = 25168.430415 eV Total energy + Delta-G solvation = -4035.119003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.56345 -39.30958 -38.45873 -37.39893 -34.56459 -34.24006 -32.75136 -31.01447 -30.62433 -30.40850 -29.24904 -26.82647 -25.91531 -24.32762 -23.74097 -23.24439 -22.41429 -20.94937 -20.09987 -19.77321 -19.11680 -18.02086 -16.94581 -16.75260 -16.51703 -15.94964 -15.72036 -15.60452 -15.09313 -14.96235 -14.51831 -14.28844 -14.15666 -13.77152 -13.69281 -13.37772 -13.15286 -12.90215 -12.76788 -12.50757 -12.34071 -12.16957 -11.87597 -11.83511 -11.49642 -11.21144 -11.00320 -10.76908 -10.70541 -10.31761 -10.26947 -10.12712 -9.98167 -9.85593 -9.84452 -9.61561 -9.49275 -9.43460 -8.89106 -8.53277 -8.24434 -6.54826 -5.65553 -3.09277 1.40414 1.89860 2.07904 3.25402 3.48495 3.54903 3.55837 3.58292 3.71723 4.14849 4.37051 4.56641 4.60254 4.62128 4.72134 4.81496 4.83297 5.01116 5.13476 5.14579 5.16817 5.26020 5.33534 5.38043 5.56938 5.58482 5.68039 5.84534 6.09958 6.18166 6.21411 6.29316 6.41288 6.45279 6.52793 6.57680 6.58922 6.70024 6.79995 6.88178 6.93065 7.10550 7.18041 7.30049 7.57097 7.84413 7.94544 7.96429 8.60254 8.68300 9.36633 10.03946 10.48176 11.41888 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.002395 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.506167 B =11689.912386 C =12735.546367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.129 3.871 7 C -0.283 4.283 8 C 0.586 3.414 9 O -0.535 6.535 10 N -0.724 5.724 11 C 0.156 3.844 12 H 0.103 0.897 13 C -0.106 4.106 14 C -0.145 4.145 15 C 0.157 3.843 16 N -0.591 5.591 17 C -0.257 4.257 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.903 5.903 21 Si 0.899 3.101 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.280 1.280 25 C 0.183 3.817 26 C -0.146 4.146 27 C 0.083 3.917 28 N -0.301 5.301 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.190 0.810 37 H 0.389 0.611 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.045 0.955 44 H 0.252 0.748 45 H 0.078 0.922 46 H 0.024 0.976 47 H 0.056 0.944 48 H 0.044 0.956 49 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 -8.881 -12.421 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.145 5.145 6 C -0.021 4.021 7 C -0.298 4.298 8 C 0.372 3.628 9 O -0.412 6.412 10 N -0.374 5.374 11 C 0.053 3.947 12 H 0.121 0.879 13 C -0.144 4.144 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.312 5.312 17 C -0.387 4.387 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.729 3.271 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.206 1.206 25 C 0.057 3.943 26 C -0.186 4.186 27 C -0.105 4.105 28 N -0.120 5.120 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.207 0.793 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.042 0.958 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -20.058 -10.085 -12.485 25.689 hybrid contribution 0.054 0.403 1.018 1.096 sum -20.004 -9.682 -11.467 25.008 Atomic orbital electron populations 1.22785 0.79903 1.03145 1.00407 1.87781 1.20615 1.26894 1.95611 1.22655 0.92510 0.85370 1.02115 1.21475 0.92668 0.78754 1.05764 1.48270 1.33300 1.12007 1.20922 1.23038 0.90563 0.94445 0.94087 1.20452 1.09913 0.96401 1.03005 1.17193 0.80728 0.81350 0.83508 1.90860 1.49416 1.75181 1.25778 1.46076 1.46475 1.13507 1.31308 1.20502 0.87757 0.87500 0.98931 0.87937 1.20571 0.99587 0.94422 0.99854 1.21452 1.01513 0.96798 0.98849 1.20693 0.90504 0.89813 0.96165 1.43669 1.76744 1.07377 1.03432 1.19174 1.15407 1.21919 0.82223 0.91791 1.25009 0.95422 1.01227 0.97579 1.70057 1.15829 1.33791 1.35081 0.86342 0.76742 0.78564 0.85431 1.21351 1.21914 1.20564 1.20944 0.92032 0.90784 0.90534 1.22441 0.95849 1.00179 1.00176 1.24078 0.93651 0.97689 0.95082 1.77111 1.24645 0.96840 1.13448 0.93709 0.89137 0.93750 0.92526 0.91483 0.88364 0.87231 0.79312 0.77810 0.93439 0.92856 0.91936 0.93113 0.95002 0.93645 0.93777 0.90363 0.95751 0.92562 0.93680 0.79347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.05 10.70 -35.23 -0.38 -3.43 16 3 C 0.05 0.38 6.11 37.16 0.23 0.60 16 4 C 0.13 0.97 6.86 -4.04 -0.03 0.95 16 5 N -0.36 -3.67 3.65 -60.81 -0.22 -3.89 16 6 C 0.13 1.47 11.25 -16.56 -0.19 1.28 16 7 C -0.28 -3.68 6.13 -105.07 -0.64 -4.32 16 8 C 0.59 9.70 7.64 -12.52 -0.10 9.61 16 9 O -0.54 -11.49 16.56 5.27 0.09 -11.41 16 10 N -0.72 -10.68 4.92 -56.14 -0.28 -10.95 16 11 C 0.16 2.82 2.06 -69.22 -0.14 2.67 16 12 H 0.10 2.34 6.92 -51.93 -0.36 1.98 16 13 C -0.11 -1.64 4.69 -29.78 -0.14 -1.78 16 14 C -0.15 -2.50 5.74 -28.58 -0.16 -2.67 16 15 C 0.16 3.23 5.66 -4.08 -0.02 3.20 16 16 N -0.59 -14.76 2.27 -172.11 -0.39 -15.15 16 17 C -0.26 -7.16 9.44 -15.06 -0.14 -7.30 16 18 H 0.06 1.76 7.88 -52.49 -0.41 1.34 16 19 C 0.01 0.18 4.87 -17.43 -0.08 0.09 16 20 N -0.90 -26.99 11.01 55.49 0.61 -26.38 16 21 Si 0.90 22.66 29.58 -169.99 -5.03 17.63 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.18 4.52 4.67 -2.96 -0.01 4.51 16 26 C -0.15 -2.88 5.39 -27.30 -0.15 -3.03 16 27 C 0.08 0.89 11.50 -16.98 -0.20 0.69 16 28 N -0.30 -3.38 12.33 30.86 0.38 -3.00 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.11 0.59 8.06 -51.93 -0.42 0.17 16 36 H 0.19 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.39 4.27 7.55 -40.82 -0.31 3.96 16 38 H 0.05 0.64 8.04 -51.92 -0.42 0.22 16 39 H 0.05 0.76 7.36 -51.93 -0.38 0.38 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 43 H 0.05 0.95 7.99 -51.93 -0.41 0.54 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.08 2.24 6.33 -51.93 -0.33 1.91 16 46 H 0.02 0.65 8.03 -51.93 -0.42 0.23 16 47 H 0.06 1.13 7.85 -51.93 -0.41 0.72 16 48 H 0.04 0.81 7.32 -51.93 -0.38 0.43 16 49 H 0.19 1.38 7.50 -52.48 -0.39 0.98 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -34.90 395.75 -7.92 -42.82 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.00 Total: 2.01 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.67 Total: 5.79 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.10 Total: -59.38 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.29 Total: -14.84 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.90 -7.92 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052900969.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.210 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds