Wall clock time and date at job start Tue Mar 31 2020 19:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00177 * 2 1 4 4 C 1.53003 * 109.47479 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.75229 * 125.00148 * 5 4 3 7 7 C 1.38047 * 107.41508 * 179.97438 * 6 5 4 8 8 C 1.47431 * 126.41454 * 179.97438 * 7 6 5 9 9 O 1.21604 * 119.99839 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00226 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99815 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.49588 * 325.04454 * 11 10 8 13 13 C 1.52567 * 109.48747 * 204.99815 * 11 10 8 14 14 C 1.47100 * 114.32638 * 155.00029 * 13 11 10 15 15 C 1.54867 * 110.31821 * 62.80448 * 14 13 11 16 16 N 1.44576 * 109.57815 * 288.74676 * 15 14 13 17 17 C 1.36936 * 118.64501 * 270.71540 * 16 15 14 18 18 H 1.07998 * 119.99825 * 26.54553 * 17 16 15 19 19 C 1.38816 * 120.00147 * 206.54702 * 17 16 15 20 20 N 1.31620 * 120.00010 * 15.71271 * 19 17 16 21 21 Si 1.86801 * 120.00173 * 195.70570 * 19 17 16 22 22 H 1.48498 * 109.46655 * 90.00102 * 21 19 17 23 23 H 1.48493 * 109.47402 * 210.00226 * 21 19 17 24 24 H 1.48497 * 109.46980 * 330.00537 * 21 19 17 25 25 C 1.47583 * 122.73176 * 90.76402 * 16 15 14 26 26 C 1.50880 * 109.50676 * 85.10617 * 11 10 8 27 27 C 1.41287 * 107.17266 * 0.22509 * 7 6 5 28 28 N 1.30452 * 108.02042 * 359.61915 * 27 7 6 29 29 H 1.08996 * 109.46793 * 60.00479 * 1 2 3 30 30 H 1.09000 * 109.46665 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47294 * 300.00226 * 1 2 3 32 32 H 1.09007 * 109.47292 * 59.99587 * 3 2 1 33 33 H 1.09004 * 109.47056 * 300.00141 * 3 2 1 34 34 H 1.08998 * 109.46558 * 59.99498 * 4 3 2 35 35 H 1.08997 * 109.46836 * 300.00063 * 4 3 2 36 36 H 1.07996 * 126.29191 * 359.97438 * 6 5 4 37 37 H 0.96995 * 120.00101 * 0.02562 * 10 8 7 38 38 H 1.09009 * 108.51355 * 33.75384 * 13 11 10 39 39 H 1.09000 * 108.51925 * 276.25679 * 13 11 10 40 40 H 1.09002 * 109.32725 * 302.54812 * 14 13 11 41 41 H 1.08994 * 109.18922 * 182.97739 * 14 13 11 42 42 H 1.09000 * 109.45067 * 48.76869 * 15 14 13 43 43 H 1.09000 * 109.44925 * 168.71914 * 15 14 13 44 44 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 45 45 H 1.09004 * 108.94507 * 197.15215 * 25 16 15 46 46 H 1.08999 * 108.89440 * 78.46204 * 25 16 15 47 47 H 1.08997 * 109.36857 * 332.05573 * 26 11 10 48 48 H 1.09005 * 109.36868 * 91.79468 * 26 11 10 49 49 H 1.08006 * 125.98949 * 179.73779 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0211 2.9859 0.8926 7 6 5.3270 4.2839 0.5358 8 6 6.2621 5.1859 1.2327 9 8 6.8507 4.8025 2.2253 10 7 6.4653 6.4350 0.7692 11 6 7.3941 7.3313 1.4621 12 1 7.3452 7.1469 2.5352 13 6 7.0112 8.7804 1.1768 14 6 7.4453 9.7360 2.2074 15 6 8.9909 9.7594 2.3022 16 7 9.4583 8.5290 2.9004 17 6 9.5819 8.4669 4.2628 18 1 8.9693 9.0977 4.8898 19 6 10.4945 7.5932 4.8378 20 7 11.4459 7.0576 4.1027 21 14 10.3726 7.1779 6.6550 22 1 9.4994 5.9901 6.8337 23 1 11.7269 6.8812 7.1869 24 1 9.7945 8.3322 7.3888 25 6 9.8088 7.3372 2.1037 26 6 8.7983 7.0792 0.9713 27 6 4.5719 4.5882 -0.6189 28 7 3.8697 3.5341 -0.9312 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6435 -0.8891 35 1 3.8568 0.6439 0.8908 36 1 5.4234 2.4428 1.7349 37 1 5.9961 6.7407 -0.0228 38 1 5.9267 8.8401 1.0843 39 1 7.4529 9.0741 0.2245 40 1 7.0292 9.4413 3.1708 41 1 7.0846 10.7312 1.9478 42 1 9.4144 9.8609 1.3030 43 1 9.3041 10.6036 2.9166 44 1 12.0839 6.4473 4.5046 45 1 9.8342 6.4675 2.7603 46 1 10.7980 7.4814 1.6693 47 1 8.8847 6.0448 0.6385 48 1 9.0150 7.7465 0.1370 49 1 4.5767 5.5280 -1.1510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052900969.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:39 Heat of formation + Delta-G solvation = -3.286845 kcal Electronic energy + Delta-G solvation = -29204.619494 eV Core-core repulsion = 25168.430415 eV Total energy + Delta-G solvation = -4036.189079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.44026 -40.67582 -39.09181 -38.89576 -36.23755 -35.02537 -34.36816 -32.67743 -32.23560 -31.41147 -30.14471 -27.82628 -27.24082 -25.74291 -25.10404 -24.49330 -23.60890 -21.80751 -21.49108 -21.05505 -20.77438 -18.94623 -18.51389 -17.65775 -17.37492 -17.27041 -16.72614 -16.57956 -16.43977 -16.12185 -15.82103 -15.67843 -15.37903 -15.07214 -14.96317 -14.74162 -14.31397 -14.25459 -13.99738 -13.78471 -13.56327 -13.19895 -13.05834 -12.97476 -12.75436 -12.74207 -12.46476 -12.36952 -12.15997 -12.00119 -11.92312 -11.70134 -11.45236 -11.33602 -11.29994 -10.82755 -10.78258 -10.64903 -10.40717 -10.07878 -9.66301 -8.60761 -7.82463 -5.27560 0.47994 1.14161 1.18405 1.42252 1.47676 1.52946 2.37575 2.52575 2.53021 2.71690 3.31733 3.48781 3.73473 3.77349 3.83570 3.84853 3.90926 4.11906 4.15418 4.17444 4.28027 4.43936 4.44830 4.47450 4.52845 4.53996 4.60881 4.64500 4.73100 4.76745 4.81623 4.91802 4.99544 5.08718 5.23019 5.28525 5.31294 5.39004 5.42347 5.58392 5.63971 5.70676 5.72882 5.78161 5.82685 6.00833 6.44795 6.45530 6.77935 7.22159 7.46901 8.00756 8.38501 9.22380 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.002395 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.506167 B =11689.912386 C =12735.546367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.058 3.942 4 C 0.129 3.871 5 N -0.357 5.357 6 C 0.132 3.868 7 C -0.307 4.307 8 C 0.585 3.415 9 O -0.597 6.597 10 N -0.706 5.706 11 C 0.166 3.834 12 H 0.049 0.951 13 C -0.103 4.103 14 C -0.132 4.132 15 C 0.147 3.853 16 N -0.603 5.603 17 C -0.257 4.257 18 H 0.065 0.935 19 C -0.053 4.053 20 N -0.935 5.935 21 Si 0.957 3.043 22 H -0.296 1.296 23 H -0.293 1.293 24 H -0.264 1.264 25 C 0.195 3.805 26 C -0.131 4.131 27 C 0.095 3.905 28 N -0.314 5.314 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.199 0.801 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.246 0.754 45 H 0.027 0.973 46 H -0.005 1.005 47 H 0.047 0.953 48 H 0.075 0.925 49 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.546 -8.005 -14.360 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.020 4.020 4 C 0.009 3.991 5 N -0.137 5.137 6 C -0.020 4.020 7 C -0.322 4.322 8 C 0.373 3.627 9 O -0.478 6.478 10 N -0.357 5.357 11 C 0.061 3.939 12 H 0.067 0.933 13 C -0.141 4.141 14 C -0.172 4.172 15 C 0.021 3.979 16 N -0.326 5.326 17 C -0.388 4.388 18 H 0.083 0.917 19 C -0.248 4.248 20 N -0.582 5.582 21 Si 0.786 3.214 22 H -0.223 1.223 23 H -0.219 1.219 24 H -0.188 1.188 25 C 0.070 3.930 26 C -0.171 4.171 27 C -0.092 4.092 28 N -0.134 5.134 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.216 0.784 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.013 0.987 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -22.836 -9.168 -14.488 28.556 hybrid contribution 0.829 0.103 1.580 1.787 sum -22.008 -9.065 -12.908 27.076 Atomic orbital electron populations 1.22971 0.78662 1.04287 1.00961 1.87756 1.22036 1.26993 1.95681 1.22539 0.92427 0.85291 1.01694 1.21731 0.92676 0.77553 1.07154 1.48454 1.32557 1.12600 1.20054 1.23253 0.90255 0.94278 0.94226 1.20208 1.10851 0.96635 1.04495 1.17695 0.80365 0.81858 0.82741 1.90837 1.51986 1.76372 1.28631 1.45769 1.45644 1.12600 1.31690 1.20137 0.87511 0.90093 0.96165 0.93300 1.20523 1.01915 0.91441 1.00223 1.21292 0.98033 0.99492 0.98429 1.20966 0.93087 0.87436 0.96441 1.43841 1.77023 1.08986 1.02740 1.19482 1.14272 1.21086 0.83953 0.91722 1.25734 0.95712 1.01996 1.01342 1.70213 1.16789 1.34765 1.36442 0.85411 0.76343 0.78232 0.81428 1.22328 1.21935 1.18847 1.20587 0.92501 0.89125 0.90828 1.22232 0.95732 1.00344 0.98759 1.24533 0.92100 0.98682 0.93918 1.77109 1.25084 0.97217 1.13979 0.93103 0.87795 0.93250 0.92759 0.92061 0.87544 0.85372 0.78434 0.74973 0.90123 0.90083 0.94500 0.89204 0.93308 0.94394 0.94519 0.95408 0.98674 0.93440 0.90694 0.76062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -5.75 10.70 -148.98 -1.59 -7.35 16 3 C 0.06 0.77 6.11 71.98 0.44 1.21 16 4 C 0.13 1.65 6.86 86.38 0.59 2.24 16 5 N -0.36 -6.59 3.65 -346.31 -1.26 -7.86 16 6 C 0.13 2.88 11.25 84.28 0.95 3.83 16 7 C -0.31 -7.60 6.13 -20.15 -0.12 -7.72 16 8 C 0.58 19.27 7.64 86.67 0.66 19.94 16 9 O -0.60 -26.80 16.56 -4.04 -0.07 -26.86 16 10 N -0.71 -19.59 4.92 -449.80 -2.21 -21.80 16 11 C 0.17 5.81 2.06 44.16 0.09 5.90 16 12 H 0.05 2.30 6.92 -2.39 -0.02 2.28 16 13 C -0.10 -2.79 4.69 28.62 0.13 -2.66 16 14 C -0.13 -4.18 5.74 29.40 0.17 -4.01 16 15 C 0.15 5.88 5.66 87.38 0.49 6.37 16 16 N -0.60 -30.83 2.27 -698.42 -1.58 -32.41 16 17 C -0.26 -14.74 9.44 84.03 0.79 -13.95 16 18 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 19 C -0.05 -3.15 4.87 84.86 0.41 -2.73 16 20 N -0.94 -58.80 11.01 21.65 0.24 -58.56 16 21 Si 0.96 48.31 29.58 68.60 2.03 50.34 16 22 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 23 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 24 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 25 C 0.20 10.11 4.67 86.49 0.40 10.51 16 26 C -0.13 -5.13 5.39 30.22 0.16 -4.97 16 27 C 0.10 1.78 11.50 85.65 0.99 2.76 16 28 N -0.31 -6.34 12.33 -56.27 -0.69 -7.04 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.13 1.15 8.06 -2.39 -0.02 1.13 16 36 H 0.20 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.41 7.50 7.55 -92.71 -0.70 6.79 16 38 H 0.08 1.73 8.04 -2.38 -0.02 1.71 16 39 H 0.08 1.84 7.36 -2.39 -0.02 1.82 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.78 8.07 -2.39 -0.02 1.77 16 43 H 0.04 1.55 7.99 -2.39 -0.02 1.53 16 44 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.03 1.69 6.33 -2.38 -0.02 1.68 16 46 H 0.00 -0.27 8.03 -2.39 -0.02 -0.29 16 47 H 0.05 1.93 7.85 -2.39 -0.02 1.91 16 48 H 0.07 2.50 7.32 -2.38 -0.02 2.48 16 49 H 0.22 2.29 7.50 -2.91 -0.02 2.27 16 Total: -1.00 -81.67 395.75 2.51 -79.16 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.24 Total: 14.18 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 7.41 Total: 18.21 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -5.52 Total: -127.68 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.66 Total: -34.21 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -81.67 2.51 -79.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052900969.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.875 kcal (2) G-P(sol) polarization free energy of solvation -81.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds