Wall clock time and date at job start Tue Mar 31 2020 21:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.77953 * 2 1 4 4 C 1.54336 * 110.84702 * 236.93176 * 2 1 3 5 5 N 1.47020 * 107.26772 * 219.67560 * 4 2 1 6 6 C 1.34777 * 125.64991 * 178.85471 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.71166 * 6 5 4 8 8 C 1.50702 * 119.99928 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.46869 * 179.72354 * 8 6 5 10 10 N 1.33312 * 126.54693 * 269.68246 * 9 8 6 11 11 N 1.29002 * 107.35466 * 179.83826 * 10 9 8 12 12 N 1.28778 * 108.71970 * 0.43285 * 11 10 9 13 13 C 1.46503 * 125.44648 * 179.72272 * 12 11 10 14 14 C 1.53003 * 109.47605 * 240.00360 * 13 12 11 15 15 C 1.53001 * 109.46795 * 0.02562 * 13 12 11 16 16 C 1.52998 * 109.47171 * 119.99821 * 13 12 11 17 17 N 1.28878 * 109.10611 * 359.72717 * 12 11 10 18 18 C 1.47424 * 108.70071 * 358.58770 * 5 4 2 19 19 C 1.54912 * 104.83227 * 24.35330 * 18 5 4 20 20 H 1.09006 * 110.99759 * 81.06710 * 19 18 5 21 21 N 1.46501 * 111.00351 * 204.91398 * 19 18 5 22 22 C 1.36937 * 120.00074 * 273.54664 * 21 19 18 23 23 H 1.07997 * 120.00034 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99777 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00087 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00012 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47078 * 60.00196 * 26 24 22 28 28 H 1.48492 * 109.47199 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47104 * 300.00319 * 26 24 22 30 30 H 1.09001 * 109.47001 * 296.76462 * 1 2 3 31 31 H 1.09004 * 109.46807 * 56.75322 * 1 2 3 32 32 H 1.08997 * 109.47727 * 176.75556 * 1 2 3 33 33 H 1.09004 * 109.98992 * 100.19657 * 4 2 1 34 34 H 1.09000 * 109.78269 * 339.03615 * 4 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 37 37 H 1.09002 * 109.46739 * 59.99738 * 14 13 12 38 38 H 1.08992 * 109.46922 * 179.97438 * 14 13 12 39 39 H 1.09003 * 109.46525 * 300.00108 * 14 13 12 40 40 H 1.09000 * 109.47197 * 60.00306 * 15 13 12 41 41 H 1.09004 * 109.46977 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47223 * 299.99253 * 15 13 12 43 43 H 1.09009 * 109.47082 * 60.00346 * 16 13 12 44 44 H 1.08993 * 109.47449 * 179.97438 * 16 13 12 45 45 H 1.08994 * 109.47597 * 300.00676 * 16 13 12 46 46 H 1.08993 * 110.36793 * 143.19471 * 18 5 4 47 47 H 1.09004 * 110.36721 * 265.41008 * 18 5 4 48 48 H 0.97001 * 119.99549 * 93.55332 * 21 19 18 49 49 H 0.96996 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0793 -0.7870 -1.2087 5 7 3.2444 -1.5508 -0.7391 6 6 3.9922 -2.3836 -1.4900 7 8 3.7191 -2.5563 -2.6590 8 6 5.1641 -3.1048 -0.8754 9 6 5.8230 -3.9716 -1.9173 10 7 5.5317 -5.2433 -2.1918 11 7 6.3148 -5.6203 -3.1451 12 7 7.0824 -4.6363 -3.4630 13 6 8.1166 -4.6662 -4.5002 14 6 9.4792 -4.3697 -3.8707 15 6 8.1455 -6.0502 -5.1517 16 6 7.8046 -3.6097 -5.5620 17 7 6.7954 -3.6212 -2.7226 18 6 3.4632 -1.2500 0.6874 19 6 2.0789 -0.7955 1.2137 20 1 1.4451 -1.6537 1.4374 21 7 2.2215 0.0694 2.3875 22 6 2.3174 -0.4824 3.6370 23 1 2.2883 -1.5553 3.7572 24 6 2.4520 0.3372 4.7493 25 7 2.4869 1.6448 4.6028 26 14 2.5835 -0.4155 6.4538 27 1 3.7749 -1.3000 6.5137 28 1 2.7176 0.6653 7.4632 29 1 1.3622 -1.2104 6.7395 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5634 -0.8595 32 1 -0.3634 -1.0260 -0.0582 33 1 2.3814 -0.0969 -1.9966 34 1 1.3155 -1.4686 -1.5830 35 1 5.8834 -2.3763 -0.5011 36 1 4.8159 -3.7279 -0.0517 37 1 9.7014 -5.1224 -3.1143 38 1 10.2486 -4.3924 -4.6424 39 1 9.4582 -3.3835 -3.4068 40 1 7.1748 -6.2610 -5.6004 41 1 8.9147 -6.0724 -5.9238 42 1 8.3677 -6.8032 -4.3955 43 1 7.7836 -2.6235 -5.0982 44 1 8.5742 -3.6316 -6.3335 45 1 6.8339 -3.8209 -6.0105 46 1 3.7959 -2.1428 1.2167 47 1 4.1946 -0.4494 0.7984 48 1 2.2479 1.0330 2.2794 49 1 2.5805 2.2175 5.3800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054682927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:11 Heat of formation + Delta-G solvation = 99.671816 kcal Electronic energy + Delta-G solvation = -29249.902247 eV Core-core repulsion = 25250.470542 eV Total energy + Delta-G solvation = -3999.431705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.37169 -39.87707 -38.02164 -37.53156 -34.10426 -33.61386 -33.27124 -32.49539 -30.76409 -29.65549 -28.02554 -27.93393 -27.53146 -26.05225 -24.65540 -24.02310 -22.64437 -21.47204 -20.79468 -19.93151 -19.13338 -17.48290 -17.29124 -17.17803 -16.64636 -16.07965 -15.52594 -14.89196 -14.74662 -14.55290 -14.28601 -14.15418 -13.78274 -13.53288 -13.42442 -13.13625 -12.99425 -12.97760 -12.89768 -12.79548 -12.72048 -12.32875 -12.23335 -12.02097 -11.93136 -11.83028 -11.66405 -11.48602 -11.12768 -11.01616 -10.91867 -10.85839 -10.74791 -10.62900 -10.31160 -10.28942 -9.95383 -9.81070 -9.64740 -9.03770 -8.38201 -7.11735 -5.87559 -3.18542 1.23353 1.72821 2.12300 2.75380 3.18195 3.38765 3.44271 3.44448 3.68961 3.99806 4.06883 4.17029 4.47246 4.48130 4.64619 4.91180 4.94532 5.00386 5.02759 5.10345 5.11308 5.15075 5.17891 5.20594 5.21240 5.40219 5.46820 5.51811 5.59071 5.61793 5.63227 5.69126 5.75634 5.81043 5.86312 5.92456 6.00214 6.18079 6.20049 6.23250 6.33812 6.44219 6.49836 6.59861 6.85441 7.60847 7.72411 8.27433 8.30798 8.38640 9.42015 9.95309 10.30284 11.34200 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.002365 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.052070 B =11837.689591 C =12857.451617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 H 0.084 0.916 4 C 0.118 3.882 5 N -0.610 5.610 6 C 0.535 3.465 7 O -0.547 6.547 8 C -0.041 4.041 9 C 0.191 3.809 10 N -0.276 5.276 11 N -0.065 5.065 12 N -0.132 5.132 13 C 0.179 3.821 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.159 4.159 17 N -0.296 5.296 18 C 0.068 3.932 19 C 0.177 3.823 20 H 0.067 0.933 21 N -0.710 5.710 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.929 5.929 26 Si 0.908 3.092 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.387 0.613 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 -9.944 -18.861 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.005 4.005 5 N -0.344 5.344 6 C 0.322 3.678 7 O -0.425 6.425 8 C -0.084 4.084 9 C -0.092 4.092 10 N -0.147 5.147 11 N -0.057 5.057 12 N -0.046 5.046 13 C 0.098 3.902 14 C -0.216 4.216 15 C -0.210 4.210 16 C -0.217 4.217 17 N -0.146 5.146 18 C -0.058 4.058 19 C 0.065 3.935 20 H 0.085 0.915 21 N -0.350 5.350 22 C -0.380 4.380 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.222 0.778 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.451 -10.712 -19.716 25.191 hybrid contribution 0.093 0.453 1.305 1.385 sum 11.544 -10.259 -18.411 24.030 Atomic orbital electron populations 1.21668 0.93881 1.01612 1.02049 1.22480 0.96486 0.99829 0.94476 0.89723 1.21982 0.87373 0.94248 0.96851 1.48440 1.29864 1.43611 1.12486 1.19717 0.83089 0.79087 0.85911 1.90699 1.70969 1.64366 1.16489 1.19840 0.96209 0.97661 0.94660 1.24630 0.94289 0.91578 0.98734 1.75804 1.18401 1.11392 1.09121 1.78871 1.01399 1.15428 1.10036 1.50394 1.24756 1.04699 1.24702 1.21351 0.84581 0.99730 0.84521 1.22227 0.93354 1.03934 1.02121 1.22082 1.04368 0.93018 1.01558 1.22229 1.03454 0.98528 0.97509 1.74539 1.18231 1.15022 1.06762 1.23614 1.02872 1.01038 0.78258 1.21358 0.91704 0.93786 0.86662 0.91547 1.42291 1.86884 1.05148 1.00688 1.19187 1.43272 0.91887 0.83622 0.90976 1.24761 1.02298 0.95338 0.98007 1.69644 1.56393 1.02067 1.29544 0.86269 0.77991 0.77823 0.84082 1.21119 1.21695 1.21149 0.91298 0.93204 0.92829 0.91986 0.91581 0.85927 0.85540 0.91424 0.89255 0.90362 0.90599 0.89354 0.90625 0.90376 0.89308 0.91327 0.90959 0.90859 0.77825 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.16 37.16 0.34 -1.54 16 2 C -0.11 -1.72 3.16 -88.78 -0.28 -2.00 16 3 H 0.08 1.32 8.00 -51.93 -0.42 0.91 16 4 C 0.12 1.77 6.48 -3.06 -0.02 1.75 16 5 N -0.61 -9.52 3.33 -170.51 -0.57 -10.09 16 6 C 0.54 8.73 7.84 -10.98 -0.09 8.65 16 7 O -0.55 -10.78 16.36 5.55 0.09 -10.69 16 8 C -0.04 -0.55 5.33 -29.03 -0.15 -0.71 16 9 C 0.19 2.92 6.86 -156.64 -1.07 1.84 16 10 N -0.28 -4.51 12.50 32.44 0.41 -4.11 16 11 N -0.06 -0.95 12.24 60.35 0.74 -0.21 16 12 N -0.13 -1.66 3.73 0.48 0.00 -1.66 16 13 C 0.18 1.42 1.30 -131.82 -0.17 1.25 16 14 C -0.16 -0.95 8.67 37.16 0.32 -0.63 16 15 C -0.15 -0.91 7.91 37.16 0.29 -0.61 16 16 C -0.16 -1.11 8.66 37.16 0.32 -0.79 16 17 N -0.30 -4.24 11.83 32.46 0.38 -3.86 16 18 C 0.07 1.09 6.39 -2.53 -0.02 1.07 16 19 C 0.18 3.18 3.14 -65.78 -0.21 2.97 16 20 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 21 N -0.71 -16.05 5.28 -51.35 -0.27 -16.32 16 22 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 25 N -0.93 -26.48 13.06 55.49 0.72 -25.76 16 26 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.71 8.07 -51.93 -0.42 0.30 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.98 7.77 -51.93 -0.40 0.58 16 35 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.13 1.48 7.84 -51.93 -0.41 1.07 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.09 7.47 -51.93 -0.39 0.70 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.39 9.39 7.71 -40.82 -0.31 9.07 16 49 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 404.58 15.07 6.10 6.10 Total: -1.00 -33.14 404.58 -6.63 -39.77 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.23 Total: 6.11 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.98 Total: 4.46 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 1.42 Total: -62.00 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.14 -6.63 -39.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054682927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.441 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds