Wall clock time and date at job start Tue Mar 31 2020 21:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.77953 * 2 1 4 4 C 1.54336 * 110.84702 * 236.93176 * 2 1 3 5 5 N 1.47020 * 107.26772 * 219.67560 * 4 2 1 6 6 C 1.34777 * 125.64991 * 178.85471 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.71166 * 6 5 4 8 8 C 1.50702 * 119.99928 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.46869 * 179.72354 * 8 6 5 10 10 N 1.33312 * 126.54693 * 269.68246 * 9 8 6 11 11 N 1.29002 * 107.35466 * 179.83826 * 10 9 8 12 12 N 1.28778 * 108.71970 * 0.43285 * 11 10 9 13 13 C 1.46503 * 125.44648 * 179.72272 * 12 11 10 14 14 C 1.53003 * 109.47605 * 240.00360 * 13 12 11 15 15 C 1.53001 * 109.46795 * 0.02562 * 13 12 11 16 16 C 1.52998 * 109.47171 * 119.99821 * 13 12 11 17 17 N 1.28878 * 109.10611 * 359.72717 * 12 11 10 18 18 C 1.47424 * 108.70071 * 358.58770 * 5 4 2 19 19 C 1.54912 * 104.83227 * 24.35330 * 18 5 4 20 20 H 1.09006 * 110.99759 * 81.06710 * 19 18 5 21 21 N 1.46501 * 111.00351 * 204.91398 * 19 18 5 22 22 C 1.36937 * 120.00074 * 273.54664 * 21 19 18 23 23 H 1.07997 * 120.00034 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99777 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00087 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00012 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47078 * 60.00196 * 26 24 22 28 28 H 1.48492 * 109.47199 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47104 * 300.00319 * 26 24 22 30 30 H 1.09001 * 109.47001 * 296.76462 * 1 2 3 31 31 H 1.09004 * 109.46807 * 56.75322 * 1 2 3 32 32 H 1.08997 * 109.47727 * 176.75556 * 1 2 3 33 33 H 1.09004 * 109.98992 * 100.19657 * 4 2 1 34 34 H 1.09000 * 109.78269 * 339.03615 * 4 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 37 37 H 1.09002 * 109.46739 * 59.99738 * 14 13 12 38 38 H 1.08992 * 109.46922 * 179.97438 * 14 13 12 39 39 H 1.09003 * 109.46525 * 300.00108 * 14 13 12 40 40 H 1.09000 * 109.47197 * 60.00306 * 15 13 12 41 41 H 1.09004 * 109.46977 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47223 * 299.99253 * 15 13 12 43 43 H 1.09009 * 109.47082 * 60.00346 * 16 13 12 44 44 H 1.08993 * 109.47449 * 179.97438 * 16 13 12 45 45 H 1.08994 * 109.47597 * 300.00676 * 16 13 12 46 46 H 1.08993 * 110.36793 * 143.19471 * 18 5 4 47 47 H 1.09004 * 110.36721 * 265.41008 * 18 5 4 48 48 H 0.97001 * 119.99549 * 93.55332 * 21 19 18 49 49 H 0.96996 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0793 -0.7870 -1.2087 5 7 3.2444 -1.5508 -0.7391 6 6 3.9922 -2.3836 -1.4900 7 8 3.7191 -2.5563 -2.6590 8 6 5.1641 -3.1048 -0.8754 9 6 5.8230 -3.9716 -1.9173 10 7 5.5317 -5.2433 -2.1918 11 7 6.3148 -5.6203 -3.1451 12 7 7.0824 -4.6363 -3.4630 13 6 8.1166 -4.6662 -4.5002 14 6 9.4792 -4.3697 -3.8707 15 6 8.1455 -6.0502 -5.1517 16 6 7.8046 -3.6097 -5.5620 17 7 6.7954 -3.6212 -2.7226 18 6 3.4632 -1.2500 0.6874 19 6 2.0789 -0.7955 1.2137 20 1 1.4451 -1.6537 1.4374 21 7 2.2215 0.0694 2.3875 22 6 2.3174 -0.4824 3.6370 23 1 2.2883 -1.5553 3.7572 24 6 2.4520 0.3372 4.7493 25 7 2.4869 1.6448 4.6028 26 14 2.5835 -0.4155 6.4538 27 1 3.7749 -1.3000 6.5137 28 1 2.7176 0.6653 7.4632 29 1 1.3622 -1.2104 6.7395 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5634 -0.8595 32 1 -0.3634 -1.0260 -0.0582 33 1 2.3814 -0.0969 -1.9966 34 1 1.3155 -1.4686 -1.5830 35 1 5.8834 -2.3763 -0.5011 36 1 4.8159 -3.7279 -0.0517 37 1 9.7014 -5.1224 -3.1143 38 1 10.2486 -4.3924 -4.6424 39 1 9.4582 -3.3835 -3.4068 40 1 7.1748 -6.2610 -5.6004 41 1 8.9147 -6.0724 -5.9238 42 1 8.3677 -6.8032 -4.3955 43 1 7.7836 -2.6235 -5.0982 44 1 8.5742 -3.6316 -6.3335 45 1 6.8339 -3.8209 -6.0105 46 1 3.7959 -2.1428 1.2167 47 1 4.1946 -0.4494 0.7984 48 1 2.2479 1.0330 2.2794 49 1 2.5805 2.2175 5.3800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054682927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:10 Heat of formation + Delta-G solvation = 77.485237 kcal Electronic energy + Delta-G solvation = -29250.864329 eV Core-core repulsion = 25250.470542 eV Total energy + Delta-G solvation = -4000.393787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.42187 -41.19581 -39.09482 -38.54312 -35.84312 -34.72846 -34.30293 -33.83679 -32.48745 -30.72172 -29.09704 -28.53298 -28.47303 -27.21977 -25.84198 -25.62217 -23.81267 -22.86760 -21.64459 -21.31177 -20.38634 -19.06442 -18.59327 -18.04427 -17.83422 -17.42664 -16.75900 -16.46376 -15.70640 -15.61185 -15.27853 -15.17787 -15.15583 -14.82118 -14.50112 -14.44981 -14.31602 -14.17878 -13.92863 -13.46128 -13.34594 -13.23447 -13.13034 -13.05566 -12.90185 -12.86309 -12.85115 -12.77121 -12.57425 -12.22727 -12.17799 -12.13951 -11.97342 -11.96633 -11.89317 -11.67200 -11.43195 -11.33112 -10.97590 -10.83369 -9.72119 -9.00151 -7.90185 -5.19373 0.18876 0.89304 1.00708 1.47724 1.54127 1.55011 1.60724 1.94840 2.60308 2.75550 3.12324 3.34964 3.41768 3.51331 3.56817 3.65331 3.77712 3.82065 3.96888 4.14938 4.20243 4.33219 4.42204 4.44500 4.48472 4.50508 4.51590 4.57032 4.59417 4.62828 4.70072 4.71095 4.72066 4.75909 4.90985 4.93493 5.00941 5.10306 5.10842 5.16075 5.20155 5.21593 5.33940 5.36141 5.48552 5.60480 6.30508 6.42625 6.99701 7.30181 7.38995 8.10351 8.34602 9.32348 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.002365 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.052070 B =11837.689591 C =12857.451617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 H 0.081 0.919 4 C 0.120 3.880 5 N -0.607 5.607 6 C 0.536 3.464 7 O -0.583 6.583 8 C -0.037 4.037 9 C 0.177 3.823 10 N -0.308 5.308 11 N -0.076 5.076 12 N -0.118 5.118 13 C 0.161 3.839 14 C -0.153 4.153 15 C -0.148 4.148 16 C -0.155 4.155 17 N -0.304 5.304 18 C 0.080 3.920 19 C 0.170 3.830 20 H 0.064 0.936 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.080 0.920 24 C -0.069 4.069 25 N -0.966 5.966 26 Si 0.966 3.034 27 H -0.277 1.277 28 H -0.301 1.301 29 H -0.281 1.281 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.061 0.939 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.126 0.874 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.128 0.872 45 H 0.051 0.949 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.377 0.623 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.774 -11.052 -20.049 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.340 5.340 6 C 0.324 3.676 7 O -0.464 6.464 8 C -0.079 4.079 9 C -0.106 4.106 10 N -0.178 5.178 11 N -0.068 5.068 12 N -0.034 5.034 13 C 0.082 3.918 14 C -0.211 4.211 15 C -0.206 4.206 16 C -0.213 4.213 17 N -0.155 5.155 18 C -0.045 4.045 19 C 0.060 3.940 20 H 0.082 0.918 21 N -0.358 5.358 22 C -0.370 4.370 23 H 0.098 0.902 24 C -0.261 4.261 25 N -0.616 5.616 26 Si 0.796 3.204 27 H -0.203 1.203 28 H -0.228 1.228 29 H -0.207 1.207 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.145 0.855 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.147 0.853 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.210 0.790 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.817 -11.873 -20.930 27.264 hybrid contribution -0.299 0.765 1.499 1.710 sum 12.518 -11.108 -19.431 25.644 Atomic orbital electron populations 1.21627 0.92770 1.02259 1.02078 1.22387 0.97366 0.99237 0.93192 0.90072 1.22000 0.87317 0.94308 0.96651 1.48429 1.29935 1.43427 1.12183 1.20133 0.83389 0.78643 0.85409 1.90683 1.72063 1.65558 1.18109 1.19936 0.95499 0.97995 0.94519 1.24927 0.94734 0.91600 0.99366 1.75750 1.19579 1.12225 1.10231 1.78782 1.01848 1.16072 1.10079 1.50983 1.24393 1.03703 1.24337 1.22041 0.84410 1.01327 0.84057 1.22254 0.92916 1.02891 1.03021 1.22138 1.04943 0.91443 1.02117 1.22259 1.03991 0.97152 0.97916 1.74504 1.18285 1.15710 1.07005 1.23333 1.01226 1.01483 0.78479 1.21507 0.92883 0.93466 0.86189 0.91828 1.42377 1.87053 1.05111 1.01290 1.19560 1.40552 0.92235 0.84678 0.90173 1.25459 1.03663 0.95738 1.01265 1.69789 1.58861 1.03206 1.29762 0.85327 0.78167 0.76768 0.80173 1.20258 1.22772 1.20712 0.93157 0.90989 0.92155 0.91434 0.91168 0.83756 0.83713 0.91962 0.85559 0.91613 0.91941 0.85541 0.91213 0.91965 0.85349 0.92986 0.89584 0.91268 0.79023 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.16 71.98 0.66 -2.80 16 2 C -0.10 -3.00 3.16 -9.60 -0.03 -3.03 16 3 H 0.08 2.47 8.00 -2.39 -0.02 2.45 16 4 C 0.12 3.41 6.48 86.73 0.56 3.97 16 5 N -0.61 -18.09 3.33 -811.76 -2.70 -20.79 16 6 C 0.54 16.96 7.84 87.66 0.69 17.65 16 7 O -0.58 -22.80 16.36 -3.04 -0.05 -22.85 16 8 C -0.04 -0.96 5.33 29.10 0.16 -0.81 16 9 C 0.18 5.34 6.86 138.55 0.95 6.29 16 10 N -0.31 -10.07 12.50 -51.27 -0.64 -10.71 16 11 N -0.08 -2.21 12.24 37.02 0.45 -1.76 16 12 N -0.12 -2.92 3.73 -152.39 -0.57 -3.49 16 13 C 0.16 2.30 1.30 3.60 0.00 2.30 16 14 C -0.15 -1.50 8.67 71.98 0.62 -0.88 16 15 C -0.15 -1.47 7.91 71.98 0.57 -0.91 16 16 C -0.15 -1.91 8.66 71.98 0.62 -1.29 16 17 N -0.30 -8.62 11.83 -51.21 -0.61 -9.22 16 18 C 0.08 2.45 6.39 86.86 0.55 3.00 16 19 C 0.17 5.92 3.14 46.38 0.15 6.06 16 20 H 0.06 2.28 8.04 -2.38 -0.02 2.26 16 21 N -0.72 -32.28 5.28 -316.37 -1.67 -33.95 16 22 C -0.24 -12.02 9.98 84.03 0.84 -11.18 16 23 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 25 N -0.97 -55.81 13.06 21.65 0.28 -55.53 16 26 Si 0.97 43.70 29.55 68.60 2.03 45.73 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.51 8.07 -2.39 -0.02 1.50 16 33 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.07 1.97 7.77 -2.39 -0.02 1.95 16 35 H 0.14 3.03 8.14 -2.38 -0.02 3.01 16 36 H 0.15 3.15 7.84 -2.39 -0.02 3.13 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.13 0.27 8.14 -2.38 -0.02 0.26 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.09 2.41 7.47 -2.39 -0.02 2.39 16 47 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 48 H 0.38 18.43 7.71 -92.71 -0.71 17.71 16 49 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -72.54 404.58 3.57 -68.97 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.23 Total: 28.41 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.81 Total: 15.18 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -5.45 Total: -135.45 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.54 3.57 -68.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054682927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.458 kcal (2) G-P(sol) polarization free energy of solvation -72.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds