Wall clock time and date at job start Tue Mar 31 2020 21:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.88483 * 2 1 4 4 C 1.55129 * 110.94230 * 124.07634 * 2 1 3 5 5 N 1.47421 * 104.72458 * 155.28681 * 4 2 1 6 6 C 1.34784 * 125.64843 * 155.81647 * 5 4 2 7 7 O 1.21283 * 119.99667 * 359.71852 * 6 5 4 8 8 C 1.50693 * 119.99987 * 179.72186 * 6 5 4 9 9 C 1.50698 * 109.47173 * 180.02562 * 8 6 5 10 10 N 1.33319 * 126.54781 * 269.68899 * 9 8 6 11 11 N 1.29001 * 107.35428 * 179.83138 * 10 9 8 12 12 N 1.28785 * 108.72489 * 0.43340 * 11 10 9 13 13 C 1.46502 * 125.44796 * 179.72589 * 12 11 10 14 14 C 1.52996 * 109.46762 * 239.99699 * 13 12 11 15 15 C 1.53002 * 109.47127 * 359.97438 * 13 12 11 16 16 C 1.53000 * 109.46729 * 119.99709 * 13 12 11 17 17 N 1.28880 * 109.10320 * 359.72323 * 12 11 10 18 18 C 1.47018 * 108.70379 * 335.55582 * 5 4 2 19 19 C 1.54320 * 107.27210 * 1.28563 * 18 5 4 20 20 H 1.08998 * 110.72014 * 263.65340 * 19 18 5 21 21 N 1.46500 * 110.71992 * 140.55662 * 19 18 5 22 22 C 1.36932 * 119.99778 * 86.45822 * 21 19 18 23 23 H 1.08000 * 120.00478 * 359.97438 * 22 21 19 24 24 C 1.38824 * 119.99819 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99729 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 119.99787 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47603 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46980 * 120.00326 * 26 24 22 29 29 H 1.48508 * 109.47064 * 239.99579 * 26 24 22 30 30 H 1.09008 * 109.46727 * 183.88279 * 1 2 3 31 31 H 1.09000 * 109.47082 * 303.87776 * 1 2 3 32 32 H 1.08995 * 109.47036 * 63.88413 * 1 2 3 33 33 H 1.09005 * 110.49746 * 36.45095 * 4 2 1 34 34 H 1.08997 * 110.34301 * 274.05502 * 4 2 1 35 35 H 1.09002 * 109.47106 * 299.99491 * 8 6 5 36 36 H 1.09003 * 109.47551 * 59.99749 * 8 6 5 37 37 H 1.09000 * 109.47316 * 60.00379 * 14 13 12 38 38 H 1.09004 * 109.47009 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47531 * 299.99501 * 14 13 12 40 40 H 1.08995 * 109.47055 * 59.99710 * 15 13 12 41 41 H 1.08996 * 109.46852 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.46802 * 300.00107 * 15 13 12 43 43 H 1.09000 * 109.47529 * 60.00520 * 16 13 12 44 44 H 1.09004 * 109.46452 * 179.97438 * 16 13 12 45 45 H 1.08993 * 109.47151 * 299.99592 * 16 13 12 46 46 H 1.09010 * 109.88204 * 120.70275 * 18 5 4 47 47 H 1.09004 * 109.88434 * 241.70985 * 18 5 4 48 48 H 0.96996 * 119.99540 * 266.44867 * 21 19 18 49 49 H 0.96995 * 119.99841 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0845 -0.8118 1.2000 5 7 3.4280 -1.2422 0.7725 6 6 4.4491 -1.5603 1.5928 7 8 4.3026 -1.4989 2.7952 8 6 5.7726 -1.9922 1.0160 9 6 6.7360 -2.2888 2.1362 10 7 7.5752 -1.4269 2.7107 11 7 8.2201 -2.0691 3.6249 12 7 7.8195 -3.2930 3.6312 13 6 8.3151 -4.3447 4.5226 14 6 8.9198 -5.4764 3.6893 15 6 9.3863 -3.7653 5.4487 16 6 7.1570 -4.8907 5.3602 17 7 6.9128 -3.4447 2.7279 18 6 3.4678 -1.2730 -0.6969 19 6 2.0862 -0.8075 -1.2025 20 1 1.4482 -1.6631 -1.4241 21 7 2.2278 0.0502 -2.3817 22 6 2.3023 -0.5085 -3.6297 23 1 2.2570 -1.5814 -3.7447 24 6 2.4360 0.3043 -4.7472 25 7 2.4917 1.6118 -4.6070 26 14 2.5383 -0.4578 -6.4494 27 1 2.4534 -1.9361 -6.3360 28 1 1.4143 0.0396 -7.2829 29 1 3.8280 -0.0827 -7.0830 30 1 -0.3633 -1.0254 0.0696 31 1 -0.3633 0.5728 0.8532 32 1 -0.3633 0.4523 -0.9227 33 1 1.4538 -1.6785 1.3986 34 1 2.1524 -0.1801 2.0857 35 1 5.6307 -2.8887 0.4124 36 1 6.1749 -1.1940 0.3921 37 1 9.7448 -5.0873 3.0925 38 1 9.2890 -6.2587 4.3525 39 1 8.1570 -5.8893 3.0292 40 1 8.9559 -2.9589 6.0423 41 1 9.7553 -4.5479 6.1116 42 1 10.2112 -3.3766 4.8516 43 1 6.3942 -5.3036 4.7002 44 1 7.5257 -5.6735 6.0232 45 1 6.7263 -4.0845 5.9539 46 1 4.2426 -0.5981 -1.0610 47 1 3.6686 -2.2876 -1.0411 48 1 2.2687 1.0138 -2.2784 49 1 2.5848 2.1797 -5.3878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054682931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:20 Heat of formation + Delta-G solvation = 99.845063 kcal Electronic energy + Delta-G solvation = -29261.563563 eV Core-core repulsion = 25262.139370 eV Total energy + Delta-G solvation = -3999.424193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.35625 -39.86062 -38.01463 -37.52163 -34.09533 -33.59944 -33.25699 -32.48120 -30.75381 -29.64438 -28.02522 -27.93147 -27.51404 -26.04663 -24.64350 -24.02874 -22.61960 -21.45822 -20.78461 -19.97599 -19.08570 -17.47128 -17.26242 -17.14703 -16.64729 -16.15870 -15.35948 -14.94965 -14.79270 -14.56158 -14.42832 -14.00018 -13.73833 -13.57453 -13.47595 -13.20517 -13.05512 -12.95557 -12.81152 -12.70551 -12.56197 -12.32817 -12.19849 -12.09945 -11.92377 -11.90683 -11.55718 -11.47899 -11.16582 -11.02653 -10.90607 -10.84631 -10.77398 -10.62068 -10.31415 -10.23975 -9.96873 -9.79354 -9.63841 -9.03167 -8.36351 -7.11943 -5.87313 -3.18313 1.24399 1.73733 2.13893 2.76492 3.19731 3.37579 3.43740 3.45892 3.69854 4.01220 4.07194 4.17261 4.47883 4.49668 4.64608 4.91449 4.94467 5.00507 5.03088 5.11200 5.12502 5.15540 5.18137 5.20720 5.23355 5.41899 5.47187 5.53968 5.59099 5.61344 5.62646 5.71474 5.75608 5.82168 5.87383 5.90197 5.98794 6.17888 6.19418 6.24281 6.35228 6.46740 6.52516 6.59975 6.85492 7.61287 7.73903 8.28248 8.31046 8.40028 9.42201 9.95947 10.30781 11.34554 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002372 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.399426 B =11799.318467 C =12812.900700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.115 3.885 5 N -0.610 5.610 6 C 0.536 3.464 7 O -0.548 6.548 8 C -0.041 4.041 9 C 0.191 3.809 10 N -0.275 5.275 11 N -0.065 5.065 12 N -0.132 5.132 13 C 0.179 3.821 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.159 4.159 17 N -0.296 5.296 18 C 0.068 3.932 19 C 0.177 3.823 20 H 0.067 0.933 21 N -0.712 5.712 22 C -0.248 4.248 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.928 5.928 26 Si 0.907 3.093 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.387 0.613 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.361 -13.677 18.422 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.344 5.344 6 C 0.323 3.677 7 O -0.426 6.426 8 C -0.084 4.084 9 C -0.092 4.092 10 N -0.146 5.146 11 N -0.057 5.057 12 N -0.046 5.046 13 C 0.098 3.902 14 C -0.216 4.216 15 C -0.210 4.210 16 C -0.217 4.217 17 N -0.146 5.146 18 C -0.058 4.058 19 C 0.065 3.935 20 H 0.085 0.915 21 N -0.352 5.352 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.205 4.205 25 N -0.575 5.575 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.222 0.778 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.839 -13.666 19.388 25.679 hybrid contribution -0.197 -0.114 -1.429 1.447 sum 9.642 -13.780 17.959 24.604 Atomic orbital electron populations 1.21612 0.93863 1.01543 1.02121 1.22666 0.96322 0.99821 0.94502 0.89687 1.22309 0.82457 0.98108 0.97852 1.48451 1.11820 1.65922 1.08173 1.19717 0.84334 0.77530 0.86144 1.90697 1.83105 1.54147 1.14639 1.19836 0.89853 1.05490 0.93199 1.24639 0.98901 0.85709 0.99949 1.75818 1.07829 1.25817 1.05154 1.78879 1.19636 0.91248 1.15961 1.50393 1.22713 1.08693 1.22792 1.21346 0.96009 0.84420 0.88402 1.22225 1.01947 0.96766 1.00691 1.22080 0.97488 1.02440 0.99027 1.22226 0.97129 1.02252 1.00089 1.74532 1.09346 1.26214 1.04553 1.23442 1.03720 1.01466 0.77174 1.21238 0.91488 0.93865 0.86903 0.91522 1.42374 1.86918 1.05328 1.00538 1.19274 1.43138 0.91934 0.83545 0.90899 1.24773 1.02351 0.95357 0.98005 1.69667 1.56438 1.02294 1.29120 0.86134 0.77275 0.78228 0.84593 1.20464 1.21821 1.21789 0.92847 0.93174 0.91291 0.91591 0.90951 0.86017 0.85464 0.91420 0.89270 0.90390 0.90587 0.89362 0.90621 0.90396 0.89324 0.91323 0.90469 0.92002 0.77823 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.31 37.16 0.35 -1.49 16 2 C -0.11 -1.74 3.26 -88.35 -0.29 -2.03 16 3 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 4 C 0.12 1.71 6.38 -2.41 -0.02 1.69 16 5 N -0.61 -9.57 3.32 -170.38 -0.57 -10.13 16 6 C 0.54 8.83 7.84 -10.99 -0.09 8.75 16 7 O -0.55 -10.84 16.29 5.56 0.09 -10.75 16 8 C -0.04 -0.56 5.52 -29.04 -0.16 -0.72 16 9 C 0.19 2.96 6.86 -156.62 -1.07 1.89 16 10 N -0.28 -4.59 12.50 32.45 0.41 -4.19 16 11 N -0.06 -0.96 12.24 60.35 0.74 -0.22 16 12 N -0.13 -1.68 3.73 0.48 0.00 -1.67 16 13 C 0.18 1.43 1.30 -131.82 -0.17 1.26 16 14 C -0.16 -0.95 8.66 37.16 0.32 -0.63 16 15 C -0.15 -0.92 7.91 37.16 0.29 -0.63 16 16 C -0.16 -1.10 8.66 37.16 0.32 -0.78 16 17 N -0.30 -4.26 11.83 32.47 0.38 -3.88 16 18 C 0.07 1.09 6.24 -3.07 -0.02 1.07 16 19 C 0.18 3.15 3.05 -66.10 -0.20 2.95 16 20 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16 21 N -0.71 -16.14 5.18 -51.65 -0.27 -16.41 16 22 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -26.62 13.06 55.49 0.72 -25.89 16 26 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.05 0.67 8.07 -51.92 -0.42 0.25 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 34 H 0.07 1.09 8.03 -51.93 -0.42 0.68 16 35 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 1.34 8.03 -51.92 -0.42 0.92 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.39 9.51 7.71 -40.82 -0.31 9.20 16 49 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 405.49 15.07 6.11 6.11 Total: -1.00 -33.32 405.49 -6.66 -39.98 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.28 Total: 6.26 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.98 Total: 4.55 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 1.42 Total: -62.39 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.32 -6.66 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054682931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.826 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds