Wall clock time and date at job start Tue Mar 31 2020 21:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.88483 * 2 1 4 4 C 1.55129 * 110.94230 * 124.07634 * 2 1 3 5 5 N 1.47421 * 104.72458 * 155.28681 * 4 2 1 6 6 C 1.34784 * 125.64843 * 155.81647 * 5 4 2 7 7 O 1.21283 * 119.99667 * 359.71852 * 6 5 4 8 8 C 1.50693 * 119.99987 * 179.72186 * 6 5 4 9 9 C 1.50698 * 109.47173 * 180.02562 * 8 6 5 10 10 N 1.33319 * 126.54781 * 269.68899 * 9 8 6 11 11 N 1.29001 * 107.35428 * 179.83138 * 10 9 8 12 12 N 1.28785 * 108.72489 * 0.43340 * 11 10 9 13 13 C 1.46502 * 125.44796 * 179.72589 * 12 11 10 14 14 C 1.52996 * 109.46762 * 239.99699 * 13 12 11 15 15 C 1.53002 * 109.47127 * 359.97438 * 13 12 11 16 16 C 1.53000 * 109.46729 * 119.99709 * 13 12 11 17 17 N 1.28880 * 109.10320 * 359.72323 * 12 11 10 18 18 C 1.47018 * 108.70379 * 335.55582 * 5 4 2 19 19 C 1.54320 * 107.27210 * 1.28563 * 18 5 4 20 20 H 1.08998 * 110.72014 * 263.65340 * 19 18 5 21 21 N 1.46500 * 110.71992 * 140.55662 * 19 18 5 22 22 C 1.36932 * 119.99778 * 86.45822 * 21 19 18 23 23 H 1.08000 * 120.00478 * 359.97438 * 22 21 19 24 24 C 1.38824 * 119.99819 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99729 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 119.99787 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47603 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46980 * 120.00326 * 26 24 22 29 29 H 1.48508 * 109.47064 * 239.99579 * 26 24 22 30 30 H 1.09008 * 109.46727 * 183.88279 * 1 2 3 31 31 H 1.09000 * 109.47082 * 303.87776 * 1 2 3 32 32 H 1.08995 * 109.47036 * 63.88413 * 1 2 3 33 33 H 1.09005 * 110.49746 * 36.45095 * 4 2 1 34 34 H 1.08997 * 110.34301 * 274.05502 * 4 2 1 35 35 H 1.09002 * 109.47106 * 299.99491 * 8 6 5 36 36 H 1.09003 * 109.47551 * 59.99749 * 8 6 5 37 37 H 1.09000 * 109.47316 * 60.00379 * 14 13 12 38 38 H 1.09004 * 109.47009 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47531 * 299.99501 * 14 13 12 40 40 H 1.08995 * 109.47055 * 59.99710 * 15 13 12 41 41 H 1.08996 * 109.46852 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.46802 * 300.00107 * 15 13 12 43 43 H 1.09000 * 109.47529 * 60.00520 * 16 13 12 44 44 H 1.09004 * 109.46452 * 179.97438 * 16 13 12 45 45 H 1.08993 * 109.47151 * 299.99592 * 16 13 12 46 46 H 1.09010 * 109.88204 * 120.70275 * 18 5 4 47 47 H 1.09004 * 109.88434 * 241.70985 * 18 5 4 48 48 H 0.96996 * 119.99540 * 266.44867 * 21 19 18 49 49 H 0.96995 * 119.99841 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0845 -0.8118 1.2000 5 7 3.4280 -1.2422 0.7725 6 6 4.4491 -1.5603 1.5928 7 8 4.3026 -1.4989 2.7952 8 6 5.7726 -1.9922 1.0160 9 6 6.7360 -2.2888 2.1362 10 7 7.5752 -1.4269 2.7107 11 7 8.2201 -2.0691 3.6249 12 7 7.8195 -3.2930 3.6312 13 6 8.3151 -4.3447 4.5226 14 6 8.9198 -5.4764 3.6893 15 6 9.3863 -3.7653 5.4487 16 6 7.1570 -4.8907 5.3602 17 7 6.9128 -3.4447 2.7279 18 6 3.4678 -1.2730 -0.6969 19 6 2.0862 -0.8075 -1.2025 20 1 1.4482 -1.6631 -1.4241 21 7 2.2278 0.0502 -2.3817 22 6 2.3023 -0.5085 -3.6297 23 1 2.2570 -1.5814 -3.7447 24 6 2.4360 0.3043 -4.7472 25 7 2.4917 1.6118 -4.6070 26 14 2.5383 -0.4578 -6.4494 27 1 2.4534 -1.9361 -6.3360 28 1 1.4143 0.0396 -7.2829 29 1 3.8280 -0.0827 -7.0830 30 1 -0.3633 -1.0254 0.0696 31 1 -0.3633 0.5728 0.8532 32 1 -0.3633 0.4523 -0.9227 33 1 1.4538 -1.6785 1.3986 34 1 2.1524 -0.1801 2.0857 35 1 5.6307 -2.8887 0.4124 36 1 6.1749 -1.1940 0.3921 37 1 9.7448 -5.0873 3.0925 38 1 9.2890 -6.2587 4.3525 39 1 8.1570 -5.8893 3.0292 40 1 8.9559 -2.9589 6.0423 41 1 9.7553 -4.5479 6.1116 42 1 10.2112 -3.3766 4.8516 43 1 6.3942 -5.3036 4.7002 44 1 7.5257 -5.6735 6.0232 45 1 6.7263 -4.0845 5.9539 46 1 4.2426 -0.5981 -1.0610 47 1 3.6686 -2.2876 -1.0411 48 1 2.2687 1.0138 -2.2784 49 1 2.5848 2.1797 -5.3878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054682931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:18 Heat of formation + Delta-G solvation = 77.404949 kcal Electronic energy + Delta-G solvation = -29262.536639 eV Core-core repulsion = 25262.139370 eV Total energy + Delta-G solvation = -4000.397269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.42293 -41.18349 -39.08829 -38.54320 -35.83367 -34.72950 -34.30023 -33.82806 -32.47386 -30.72149 -29.08327 -28.52911 -28.47182 -27.20549 -25.84735 -25.62522 -23.80688 -22.84151 -21.64319 -21.35829 -20.34264 -19.03743 -18.59904 -18.02884 -17.84760 -17.46267 -16.67700 -16.47310 -15.85681 -15.56235 -15.29854 -15.20154 -15.14535 -14.78393 -14.61955 -14.53940 -14.14230 -14.05701 -13.78385 -13.49024 -13.40690 -13.23548 -13.19624 -12.98507 -12.90711 -12.86150 -12.84423 -12.80947 -12.57529 -12.18726 -12.17399 -12.08487 -11.98996 -11.97338 -11.89548 -11.64538 -11.46981 -11.31870 -10.98767 -10.83913 -9.68273 -9.01871 -7.90158 -5.19513 0.18410 0.89229 1.00420 1.47751 1.52574 1.53982 1.62742 1.96139 2.60247 2.75156 3.12325 3.36107 3.42292 3.51589 3.56752 3.65327 3.78647 3.84749 3.91944 4.14929 4.25807 4.32846 4.41397 4.44376 4.47846 4.50155 4.51952 4.58722 4.59734 4.65002 4.70190 4.71121 4.72202 4.75548 4.91856 4.95151 5.01153 5.10714 5.13010 5.17788 5.21080 5.23514 5.34105 5.35807 5.51490 5.61017 6.30360 6.43420 6.99884 7.29800 7.38515 8.10530 8.33945 9.33008 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002372 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.399426 B =11799.318467 C =12812.900700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 H 0.070 0.930 4 C 0.118 3.882 5 N -0.608 5.608 6 C 0.536 3.464 7 O -0.584 6.584 8 C -0.037 4.037 9 C 0.177 3.823 10 N -0.311 5.311 11 N -0.077 5.077 12 N -0.118 5.118 13 C 0.160 3.840 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.154 4.154 17 N -0.302 5.302 18 C 0.079 3.921 19 C 0.171 3.829 20 H 0.074 0.926 21 N -0.722 5.722 22 C -0.234 4.234 23 H 0.084 0.916 24 C -0.072 4.072 25 N -0.968 5.968 26 Si 0.966 3.034 27 H -0.262 1.262 28 H -0.299 1.299 29 H -0.298 1.298 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.061 0.939 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.128 0.872 45 H 0.050 0.950 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.375 0.625 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.783 -16.577 19.479 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 H 0.088 0.912 4 C -0.005 4.005 5 N -0.340 5.340 6 C 0.324 3.676 7 O -0.465 6.465 8 C -0.079 4.079 9 C -0.106 4.106 10 N -0.181 5.181 11 N -0.069 5.069 12 N -0.034 5.034 13 C 0.081 3.919 14 C -0.211 4.211 15 C -0.207 4.207 16 C -0.213 4.213 17 N -0.152 5.152 18 C -0.046 4.046 19 C 0.061 3.939 20 H 0.091 0.909 21 N -0.361 5.361 22 C -0.366 4.366 23 H 0.102 0.898 24 C -0.265 4.265 25 N -0.619 5.619 26 Si 0.797 3.203 27 H -0.186 1.186 28 H -0.227 1.227 29 H -0.226 1.226 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.145 0.855 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.147 0.853 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.207 0.793 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.260 -16.610 20.474 28.290 hybrid contribution -0.326 0.686 -1.587 1.759 sum 9.934 -15.924 18.887 26.626 Atomic orbital electron populations 1.21568 0.92377 1.02713 1.01911 1.22568 0.97492 0.98748 0.93578 0.91152 1.22354 0.82284 0.98614 0.97209 1.48456 1.12143 1.65515 1.07895 1.20109 0.85029 0.76794 0.85648 1.90680 1.83762 1.55830 1.16192 1.19920 0.88058 1.06984 0.92982 1.24927 0.99248 0.85899 1.00556 1.75766 1.08988 1.27049 1.06255 1.78790 1.19967 0.92169 1.15935 1.51003 1.21388 1.08866 1.22119 1.22054 0.97015 0.84163 0.88632 1.22255 1.01195 0.96671 1.00946 1.22138 0.96439 1.03257 0.98850 1.22259 0.96436 1.02629 0.99955 1.74493 1.09851 1.25937 1.04967 1.23157 1.01948 1.02215 0.77290 1.21435 0.92604 0.93736 0.86151 0.90851 1.42502 1.87054 1.05230 1.01312 1.19666 1.40079 0.92351 0.84488 0.89824 1.25496 1.03834 0.95768 1.01376 1.69816 1.59109 1.03568 1.29373 0.85173 0.76263 0.78317 0.80586 1.18622 1.22698 1.22600 0.91286 0.91247 0.93324 0.89780 0.91269 0.83378 0.84399 0.92038 0.85523 0.91495 0.91993 0.85489 0.91294 0.91832 0.85318 0.93037 0.91710 0.89966 0.79288 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.31 71.98 0.67 -2.64 16 2 C -0.10 -3.08 3.26 -9.32 -0.03 -3.11 16 3 H 0.07 2.31 8.00 -2.39 -0.02 2.29 16 4 C 0.12 3.30 6.38 86.93 0.55 3.85 16 5 N -0.61 -18.21 3.32 -811.35 -2.70 -20.91 16 6 C 0.54 17.23 7.84 87.65 0.69 17.91 16 7 O -0.58 -23.02 16.29 -3.04 -0.05 -23.07 16 8 C -0.04 -0.99 5.52 29.10 0.16 -0.83 16 9 C 0.18 5.45 6.86 138.55 0.95 6.40 16 10 N -0.31 -10.52 12.50 -51.26 -0.64 -11.16 16 11 N -0.08 -2.29 12.24 37.02 0.45 -1.84 16 12 N -0.12 -2.93 3.73 -152.39 -0.57 -3.50 16 13 C 0.16 2.29 1.30 3.60 0.00 2.29 16 14 C -0.15 -1.47 8.66 71.98 0.62 -0.84 16 15 C -0.15 -1.51 7.91 71.98 0.57 -0.94 16 16 C -0.15 -1.87 8.66 71.98 0.62 -1.24 16 17 N -0.30 -8.54 11.83 -51.20 -0.61 -9.15 16 18 C 0.08 2.42 6.24 86.73 0.54 2.96 16 19 C 0.17 5.85 3.05 46.18 0.14 5.99 16 20 H 0.07 2.45 8.02 -2.39 -0.02 2.43 16 21 N -0.72 -32.56 5.18 -317.33 -1.64 -34.21 16 22 C -0.23 -11.75 9.98 84.04 0.84 -10.91 16 23 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 24 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 25 N -0.97 -56.64 13.06 21.66 0.28 -56.36 16 26 Si 0.97 43.77 29.55 68.60 2.03 45.79 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 30 H 0.07 1.57 8.07 -2.38 -0.02 1.55 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 2.09 7.99 -2.38 -0.02 2.07 16 34 H 0.07 2.02 8.03 -2.39 -0.02 2.00 16 35 H 0.15 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.14 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 2.18 8.03 -2.38 -0.02 2.16 16 47 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 48 H 0.37 18.72 7.71 -92.71 -0.72 18.01 16 49 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -73.68 405.49 3.59 -70.10 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.23 Total: 28.83 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.80 Total: 15.47 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -5.42 Total: -137.12 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.68 3.59 -70.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054682931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.501 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds