Wall clock time and date at job start Tue Mar 31 2020 21:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.88846 * 2 1 4 4 C 1.54909 * 111.00534 * 123.88579 * 2 1 3 5 5 N 1.47418 * 104.83184 * 155.08374 * 4 2 1 6 6 C 1.34777 * 125.65118 * 155.90958 * 5 4 2 7 7 O 1.21284 * 119.99692 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00494 * 179.97438 * 6 5 4 9 9 C 1.50696 * 109.47263 * 179.97438 * 8 6 5 10 10 N 1.33311 * 126.55169 * 269.68603 * 9 8 6 11 11 N 1.28999 * 107.35365 * 179.83635 * 10 9 8 12 12 N 1.28782 * 108.72731 * 0.43716 * 11 10 9 13 13 C 1.46499 * 125.44880 * 179.73041 * 12 11 10 14 14 C 1.53008 * 109.46622 * 239.99210 * 13 12 11 15 15 C 1.52996 * 109.47149 * 359.97438 * 13 12 11 16 16 C 1.52995 * 109.47293 * 119.99732 * 13 12 11 17 17 N 1.28880 * 109.09898 * 359.72187 * 12 11 10 18 18 C 1.47024 * 108.70570 * 335.86900 * 5 4 2 19 19 C 1.54326 * 107.26637 * 1.05952 * 18 5 4 20 20 H 1.08999 * 110.71537 * 140.55908 * 19 18 5 21 21 N 1.46500 * 110.72191 * 263.82679 * 19 18 5 22 22 C 1.36938 * 120.00536 * 268.52549 * 21 19 18 23 23 H 1.08002 * 119.99518 * 359.97438 * 22 21 19 24 24 C 1.38806 * 120.00413 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99848 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00134 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47158 * 59.99832 * 26 24 22 28 28 H 1.48499 * 109.46987 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46779 * 299.99768 * 26 24 22 30 30 H 1.09001 * 109.47002 * 297.56794 * 1 2 3 31 31 H 1.08993 * 109.46955 * 57.57232 * 1 2 3 32 32 H 1.09000 * 109.47050 * 177.57060 * 1 2 3 33 33 H 1.09003 * 110.36235 * 273.92057 * 4 2 1 34 34 H 1.09000 * 110.36734 * 36.24379 * 4 2 1 35 35 H 1.09000 * 109.46834 * 300.00156 * 8 6 5 36 36 H 1.09005 * 109.46889 * 59.99263 * 8 6 5 37 37 H 1.09000 * 109.46849 * 60.00479 * 14 13 12 38 38 H 1.09001 * 109.46724 * 179.97438 * 14 13 12 39 39 H 1.08991 * 109.47405 * 300.00123 * 14 13 12 40 40 H 1.08998 * 109.47363 * 60.00572 * 15 13 12 41 41 H 1.09007 * 109.46993 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47072 * 300.00059 * 15 13 12 43 43 H 1.08998 * 109.47515 * 59.99323 * 16 13 12 44 44 H 1.09004 * 109.47280 * 179.97438 * 16 13 12 45 45 H 1.09003 * 109.47406 * 299.99682 * 16 13 12 46 46 H 1.08996 * 109.88300 * 120.48004 * 18 5 4 47 47 H 1.09001 * 109.88002 * 241.49547 * 18 5 4 48 48 H 0.97006 * 120.00063 * 88.52291 * 21 19 18 49 49 H 0.97004 * 120.00013 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8063 1.2005 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5611 1.5944 7 8 4.3010 -1.4991 2.7967 8 6 5.7712 -1.9941 1.0182 9 6 6.7344 -2.2896 2.1389 10 7 7.5738 -1.4273 2.7124 11 7 8.2185 -2.0686 3.6274 12 7 7.8176 -3.2924 3.6351 13 6 8.3127 -4.3431 4.5279 14 6 8.9172 -5.4761 3.6960 15 6 9.3839 -3.7629 5.4534 16 6 7.1545 -4.8878 5.3661 17 7 6.9109 -3.4448 2.7319 18 6 3.4675 -1.2744 -0.6957 19 6 2.0861 -0.8083 -1.2020 20 1 2.1922 -0.1707 -2.0796 21 7 1.2268 -1.9579 -1.4956 22 6 1.2056 -2.4928 -2.7560 23 1 1.8222 -2.0669 -3.5337 24 6 0.3918 -3.5824 -3.0340 25 7 -0.3600 -4.1011 -2.0863 26 14 0.3636 -4.3125 -4.7532 27 1 1.7257 -4.7806 -5.1146 28 1 -0.5800 -5.4586 -4.7888 29 1 -0.0780 -3.2782 -5.7230 30 1 -0.3633 0.4756 0.9110 31 1 -0.3633 0.5510 -0.8674 32 1 -0.3633 -1.0267 -0.0436 33 1 2.1561 -0.1713 2.0837 34 1 1.4520 -1.6700 1.4029 35 1 5.6289 -2.8908 0.4150 36 1 6.1741 -1.1965 0.3940 37 1 9.7423 -5.0880 3.0988 38 1 9.2860 -6.2576 4.3602 39 1 8.1543 -5.8894 3.0364 40 1 8.9536 -2.9557 6.0461 41 1 9.7527 -4.5448 6.1174 42 1 10.2090 -3.3751 4.8560 43 1 6.3915 -5.3012 4.7065 44 1 7.5229 -5.6699 6.0300 45 1 6.7238 -4.0807 5.9588 46 1 4.2426 -0.6001 -1.0598 47 1 3.6677 -2.2892 -1.0393 48 1 0.6727 -2.3402 -0.7972 49 1 -0.9284 -4.8627 -2.2805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054682932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:24 Heat of formation + Delta-G solvation = 103.767568 kcal Electronic energy + Delta-G solvation = -29548.025777 eV Core-core repulsion = 25548.771677 eV Total energy + Delta-G solvation = -3999.254100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.32527 -39.81826 -37.99265 -37.53089 -33.96251 -33.55417 -33.21172 -32.35937 -30.52931 -29.58671 -27.96749 -27.89525 -27.71697 -25.92827 -24.60489 -23.86978 -22.73136 -21.84330 -20.74675 -19.29483 -18.98424 -17.66226 -17.31094 -17.18952 -16.51083 -15.96374 -15.27706 -14.88022 -14.63958 -14.53511 -14.40147 -14.15703 -13.74636 -13.66759 -13.41063 -13.08816 -12.99372 -12.89538 -12.80851 -12.74006 -12.27583 -12.22347 -12.09153 -12.00045 -11.87310 -11.80371 -11.55680 -11.43807 -11.12541 -10.93282 -10.87472 -10.81044 -10.76850 -10.44709 -10.31072 -10.24649 -9.95565 -9.68753 -9.56859 -9.02735 -8.26836 -7.09296 -5.85719 -3.16010 1.28077 1.77706 2.16922 2.84974 3.29067 3.38643 3.43707 3.44760 3.74719 4.04735 4.11995 4.22255 4.50701 4.52577 4.69125 4.95695 4.99830 5.06118 5.09417 5.15692 5.17319 5.20739 5.23444 5.25318 5.34710 5.44928 5.51277 5.52690 5.62999 5.64511 5.68364 5.75444 5.78725 5.90749 5.94762 5.97454 6.17618 6.23055 6.26017 6.33787 6.37766 6.52702 6.61901 6.73919 6.96212 7.61524 7.83898 8.31853 8.38426 8.42925 9.43842 9.98447 10.33082 11.36187 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.002592 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.866205 B =10799.792759 C =11848.104542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.604 5.604 6 C 0.535 3.465 7 O -0.548 6.548 8 C -0.040 4.040 9 C 0.191 3.809 10 N -0.278 5.278 11 N -0.066 5.066 12 N -0.132 5.132 13 C 0.179 3.821 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.159 4.159 17 N -0.293 5.293 18 C 0.066 3.934 19 C 0.173 3.827 20 H 0.074 0.926 21 N -0.711 5.711 22 C -0.247 4.247 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.285 1.285 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.387 0.613 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.855 1.032 11.798 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.337 5.337 6 C 0.322 3.678 7 O -0.426 6.426 8 C -0.083 4.083 9 C -0.092 4.092 10 N -0.149 5.149 11 N -0.059 5.059 12 N -0.045 5.045 13 C 0.098 3.902 14 C -0.217 4.217 15 C -0.210 4.210 16 C -0.218 4.218 17 N -0.143 5.143 18 C -0.060 4.060 19 C 0.060 3.940 20 H 0.092 0.908 21 N -0.352 5.352 22 C -0.378 4.378 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.738 3.262 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.212 1.212 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.223 0.777 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.315 1.051 12.764 21.537 hybrid contribution -0.573 -0.765 -1.146 1.492 sum 16.742 0.286 11.618 20.381 Atomic orbital electron populations 1.21563 0.93371 1.03533 1.00523 1.22650 0.97001 0.98489 0.95405 0.90333 1.22257 0.82598 0.98369 0.97366 1.48355 1.11864 1.65627 1.07879 1.19667 0.84351 0.77625 0.86182 1.90698 1.83189 1.54101 1.14645 1.19829 0.89873 1.05394 0.93197 1.24639 0.98879 0.85726 0.99998 1.75778 1.07980 1.25869 1.05282 1.78848 1.19706 0.91356 1.15953 1.50396 1.22679 1.08666 1.22787 1.21351 0.96024 0.84437 0.88364 1.22229 1.01950 0.96748 1.00724 1.22078 0.97454 1.02429 0.99019 1.22235 0.97153 1.02270 1.00125 1.74579 1.09105 1.26236 1.04385 1.23386 1.01862 1.02359 0.78349 1.21185 0.88149 0.89862 0.94796 0.90787 1.42451 1.48880 1.32996 1.10836 1.19189 1.20871 1.10018 0.87759 0.90992 1.24752 0.99290 0.98793 0.97643 1.69647 1.30000 1.26143 1.31860 0.86276 0.77281 0.78555 0.84072 1.21215 1.21751 1.21202 0.93754 0.92317 0.90819 0.91311 0.91228 0.85878 0.85843 0.91472 0.89258 0.90301 0.90613 0.89362 0.90673 0.90277 0.89307 0.91325 0.92357 0.90272 0.77741 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.98 37.16 0.33 -1.73 16 2 C -0.12 -1.77 3.51 -88.47 -0.31 -2.08 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 1.93 6.33 -2.53 -0.02 1.91 16 5 N -0.60 -10.04 3.33 -170.52 -0.57 -10.61 16 6 C 0.54 9.26 7.84 -10.99 -0.09 9.17 16 7 O -0.55 -11.42 16.29 5.55 0.09 -11.33 16 8 C -0.04 -0.56 5.52 -29.04 -0.16 -0.72 16 9 C 0.19 3.02 6.86 -156.63 -1.07 1.95 16 10 N -0.28 -4.60 12.50 32.44 0.41 -4.19 16 11 N -0.07 -0.99 12.24 60.35 0.74 -0.25 16 12 N -0.13 -1.74 3.73 0.48 0.00 -1.74 16 13 C 0.18 1.55 1.30 -131.82 -0.17 1.38 16 14 C -0.16 -1.07 8.66 37.16 0.32 -0.75 16 15 C -0.15 -0.98 7.91 37.16 0.29 -0.68 16 16 C -0.16 -1.27 8.66 37.16 0.32 -0.95 16 17 N -0.29 -4.47 11.83 32.46 0.38 -4.09 16 18 C 0.07 1.05 6.23 -3.06 -0.02 1.03 16 19 C 0.17 3.03 3.39 -66.10 -0.22 2.81 16 20 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 21 N -0.71 -16.01 4.46 -51.65 -0.23 -16.24 16 22 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 26 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.36 6.27 -51.93 -0.33 1.03 16 33 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 34 H 0.07 1.26 8.04 -51.93 -0.42 0.85 16 35 H 0.12 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 48 H 0.39 9.47 6.25 -40.82 -0.25 9.22 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -33.49 401.96 -6.60 -40.09 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.14 Total: 7.40 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.04 Total: 4.59 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 1.46 Total: -63.08 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.49 -6.60 -40.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054682932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.853 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds