Wall clock time and date at job start Tue Mar 31 2020 21:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.88846 * 2 1 4 4 C 1.54909 * 111.00534 * 123.88579 * 2 1 3 5 5 N 1.47418 * 104.83184 * 155.08374 * 4 2 1 6 6 C 1.34777 * 125.65118 * 155.90958 * 5 4 2 7 7 O 1.21284 * 119.99692 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00494 * 179.97438 * 6 5 4 9 9 C 1.50696 * 109.47263 * 179.97438 * 8 6 5 10 10 N 1.33311 * 126.55169 * 269.68603 * 9 8 6 11 11 N 1.28999 * 107.35365 * 179.83635 * 10 9 8 12 12 N 1.28782 * 108.72731 * 0.43716 * 11 10 9 13 13 C 1.46499 * 125.44880 * 179.73041 * 12 11 10 14 14 C 1.53008 * 109.46622 * 239.99210 * 13 12 11 15 15 C 1.52996 * 109.47149 * 359.97438 * 13 12 11 16 16 C 1.52995 * 109.47293 * 119.99732 * 13 12 11 17 17 N 1.28880 * 109.09898 * 359.72187 * 12 11 10 18 18 C 1.47024 * 108.70570 * 335.86900 * 5 4 2 19 19 C 1.54326 * 107.26637 * 1.05952 * 18 5 4 20 20 H 1.08999 * 110.71537 * 140.55908 * 19 18 5 21 21 N 1.46500 * 110.72191 * 263.82679 * 19 18 5 22 22 C 1.36938 * 120.00536 * 268.52549 * 21 19 18 23 23 H 1.08002 * 119.99518 * 359.97438 * 22 21 19 24 24 C 1.38806 * 120.00413 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99848 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00134 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47158 * 59.99832 * 26 24 22 28 28 H 1.48499 * 109.46987 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46779 * 299.99768 * 26 24 22 30 30 H 1.09001 * 109.47002 * 297.56794 * 1 2 3 31 31 H 1.08993 * 109.46955 * 57.57232 * 1 2 3 32 32 H 1.09000 * 109.47050 * 177.57060 * 1 2 3 33 33 H 1.09003 * 110.36235 * 273.92057 * 4 2 1 34 34 H 1.09000 * 110.36734 * 36.24379 * 4 2 1 35 35 H 1.09000 * 109.46834 * 300.00156 * 8 6 5 36 36 H 1.09005 * 109.46889 * 59.99263 * 8 6 5 37 37 H 1.09000 * 109.46849 * 60.00479 * 14 13 12 38 38 H 1.09001 * 109.46724 * 179.97438 * 14 13 12 39 39 H 1.08991 * 109.47405 * 300.00123 * 14 13 12 40 40 H 1.08998 * 109.47363 * 60.00572 * 15 13 12 41 41 H 1.09007 * 109.46993 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47072 * 300.00059 * 15 13 12 43 43 H 1.08998 * 109.47515 * 59.99323 * 16 13 12 44 44 H 1.09004 * 109.47280 * 179.97438 * 16 13 12 45 45 H 1.09003 * 109.47406 * 299.99682 * 16 13 12 46 46 H 1.08996 * 109.88300 * 120.48004 * 18 5 4 47 47 H 1.09001 * 109.88002 * 241.49547 * 18 5 4 48 48 H 0.97006 * 120.00063 * 88.52291 * 21 19 18 49 49 H 0.97004 * 120.00013 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8063 1.2005 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5611 1.5944 7 8 4.3010 -1.4991 2.7967 8 6 5.7712 -1.9941 1.0182 9 6 6.7344 -2.2896 2.1389 10 7 7.5738 -1.4273 2.7124 11 7 8.2185 -2.0686 3.6274 12 7 7.8176 -3.2924 3.6351 13 6 8.3127 -4.3431 4.5279 14 6 8.9172 -5.4761 3.6960 15 6 9.3839 -3.7629 5.4534 16 6 7.1545 -4.8878 5.3661 17 7 6.9109 -3.4448 2.7319 18 6 3.4675 -1.2744 -0.6957 19 6 2.0861 -0.8083 -1.2020 20 1 2.1922 -0.1707 -2.0796 21 7 1.2268 -1.9579 -1.4956 22 6 1.2056 -2.4928 -2.7560 23 1 1.8222 -2.0669 -3.5337 24 6 0.3918 -3.5824 -3.0340 25 7 -0.3600 -4.1011 -2.0863 26 14 0.3636 -4.3125 -4.7532 27 1 1.7257 -4.7806 -5.1146 28 1 -0.5800 -5.4586 -4.7888 29 1 -0.0780 -3.2782 -5.7230 30 1 -0.3633 0.4756 0.9110 31 1 -0.3633 0.5510 -0.8674 32 1 -0.3633 -1.0267 -0.0436 33 1 2.1561 -0.1713 2.0837 34 1 1.4520 -1.6700 1.4029 35 1 5.6289 -2.8908 0.4150 36 1 6.1741 -1.1965 0.3940 37 1 9.7423 -5.0880 3.0988 38 1 9.2860 -6.2576 4.3602 39 1 8.1543 -5.8894 3.0364 40 1 8.9536 -2.9557 6.0461 41 1 9.7527 -4.5448 6.1174 42 1 10.2090 -3.3751 4.8560 43 1 6.3915 -5.3012 4.7065 44 1 7.5229 -5.6699 6.0300 45 1 6.7238 -4.0807 5.9588 46 1 4.2426 -0.6001 -1.0598 47 1 3.6677 -2.2892 -1.0393 48 1 0.6727 -2.3402 -0.7972 49 1 -0.9284 -4.8627 -2.2805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054682932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:23 Heat of formation + Delta-G solvation = 81.168536 kcal Electronic energy + Delta-G solvation = -29549.005744 eV Core-core repulsion = 25548.771677 eV Total energy + Delta-G solvation = -4000.234068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.41997 -41.18636 -39.15117 -38.55361 -35.68470 -34.71460 -34.28790 -33.80324 -32.22266 -30.71082 -29.28437 -28.55103 -28.47500 -27.19883 -25.72947 -25.61877 -24.00042 -23.13604 -21.64187 -20.69042 -20.28731 -19.39629 -18.53222 -18.02866 -17.78008 -17.36712 -16.62035 -16.38940 -15.90864 -15.68113 -15.36203 -15.20079 -15.13729 -14.76911 -14.66037 -14.46023 -14.27903 -13.98197 -13.54209 -13.45321 -13.35497 -13.24083 -13.19219 -13.00554 -12.90611 -12.87523 -12.82376 -12.72079 -12.58095 -12.29369 -12.18865 -12.15305 -11.97277 -11.94619 -11.89490 -11.45799 -11.41366 -11.30222 -10.97514 -10.82208 -9.65780 -8.97036 -7.88088 -5.16043 0.18893 0.89178 1.01034 1.51037 1.53273 1.54501 1.60160 2.02349 2.61305 2.77024 3.11642 3.41966 3.43833 3.50089 3.56709 3.64783 3.80277 3.94051 3.96702 4.12642 4.15897 4.34059 4.43611 4.45693 4.48562 4.50126 4.57559 4.58200 4.66054 4.69280 4.70105 4.71108 4.75476 4.77059 4.90628 4.99772 5.02985 5.03777 5.08838 5.20625 5.23020 5.28106 5.33475 5.37292 5.58844 5.64411 6.33000 6.50306 7.03325 7.30133 7.40679 8.15439 8.37703 9.35037 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.002592 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.866205 B =10799.792759 C =11848.104542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.110 0.890 4 C 0.115 3.885 5 N -0.603 5.603 6 C 0.532 3.468 7 O -0.590 6.590 8 C -0.034 4.034 9 C 0.177 3.823 10 N -0.304 5.304 11 N -0.075 5.075 12 N -0.119 5.119 13 C 0.161 3.839 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.156 4.156 17 N -0.309 5.309 18 C 0.075 3.925 19 C 0.162 3.838 20 H 0.089 0.911 21 N -0.722 5.722 22 C -0.232 4.232 23 H 0.086 0.914 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.278 1.278 28 H -0.305 1.305 29 H -0.278 1.278 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.126 0.874 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.128 0.872 45 H 0.051 0.949 46 H 0.100 0.900 47 H 0.063 0.937 48 H 0.374 0.626 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.077 1.588 11.505 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.128 0.872 4 C -0.007 4.007 5 N -0.335 5.335 6 C 0.320 3.680 7 O -0.471 6.471 8 C -0.076 4.076 9 C -0.106 4.106 10 N -0.174 5.174 11 N -0.067 5.067 12 N -0.035 5.035 13 C 0.082 3.918 14 C -0.211 4.211 15 C -0.205 4.205 16 C -0.214 4.214 17 N -0.160 5.160 18 C -0.050 4.050 19 C 0.052 3.948 20 H 0.107 0.893 21 N -0.362 5.362 22 C -0.364 4.364 23 H 0.103 0.897 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.204 1.204 28 H -0.232 1.232 29 H -0.204 1.204 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.083 0.917 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.144 0.856 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.147 0.853 45 H 0.070 0.930 46 H 0.118 0.882 47 H 0.082 0.918 48 H 0.207 0.793 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.589 1.662 12.445 23.267 hybrid contribution -1.212 -0.918 -0.936 1.785 sum 18.377 0.744 11.509 21.696 Atomic orbital electron populations 1.21487 0.93705 1.01543 1.01732 1.22606 0.96609 0.99381 0.93371 0.87194 1.22223 0.82542 0.97696 0.98264 1.48428 1.11659 1.65171 1.08272 1.20211 0.85325 0.76742 0.85680 1.90676 1.84036 1.55896 1.16500 1.19919 0.87743 1.06989 0.92951 1.24961 0.99250 0.85828 1.00585 1.75723 1.08829 1.26727 1.06125 1.78757 1.19931 0.92098 1.15885 1.50961 1.21454 1.08918 1.22164 1.22026 0.96905 0.84278 0.88598 1.22252 1.01164 0.96713 1.00952 1.22132 0.96351 1.03233 0.98797 1.22263 0.96529 1.02671 0.99966 1.74547 1.09879 1.26460 1.05072 1.23252 1.01670 1.02446 0.77646 1.21481 0.88296 0.88708 0.96340 0.89315 1.42622 1.49667 1.34258 1.09648 1.19634 1.18972 1.08817 0.88946 0.89660 1.25477 1.00252 1.00230 1.00741 1.69815 1.31741 1.26905 1.33675 0.85307 0.77048 0.77392 0.80561 1.20409 1.23234 1.20430 0.91593 0.92124 0.94250 0.90939 0.93730 0.84413 0.82810 0.91722 0.85573 0.91888 0.91911 0.85561 0.91009 0.92314 0.85320 0.92989 0.88223 0.91830 0.79282 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.98 71.98 0.65 -3.21 16 2 C -0.10 -2.88 3.51 -9.40 -0.03 -2.91 16 3 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.12 3.76 6.33 86.86 0.55 4.31 16 5 N -0.60 -19.31 3.33 -811.80 -2.70 -22.01 16 6 C 0.53 18.06 7.84 87.66 0.69 18.75 16 7 O -0.59 -24.85 16.29 -3.04 -0.05 -24.90 16 8 C -0.03 -0.90 5.52 29.10 0.16 -0.74 16 9 C 0.18 5.55 6.86 138.55 0.95 6.50 16 10 N -0.30 -10.00 12.50 -51.27 -0.64 -10.64 16 11 N -0.07 -2.23 12.24 37.02 0.45 -1.77 16 12 N -0.12 -3.12 3.73 -152.40 -0.57 -3.69 16 13 C 0.16 2.58 1.30 3.60 0.00 2.58 16 14 C -0.15 -1.76 8.66 71.98 0.62 -1.14 16 15 C -0.15 -1.61 7.91 71.98 0.57 -1.04 16 16 C -0.16 -2.32 8.66 71.98 0.62 -1.69 16 17 N -0.31 -9.43 11.83 -51.20 -0.61 -10.04 16 18 C 0.07 2.19 6.23 86.73 0.54 2.73 16 19 C 0.16 5.37 3.39 46.18 0.16 5.52 16 20 H 0.09 2.73 8.09 -2.39 -0.02 2.71 16 21 N -0.72 -32.33 4.46 -317.33 -1.42 -33.75 16 22 C -0.23 -11.61 9.96 84.03 0.84 -10.77 16 23 H 0.09 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 25 N -0.97 -57.35 13.06 21.65 0.28 -57.07 16 26 Si 0.97 44.02 29.55 68.60 2.03 46.05 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.31 -14.46 7.11 99.48 0.71 -13.76 16 29 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.48 6.27 -2.39 -0.01 1.46 16 33 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 34 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 35 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.15 3.08 8.14 -2.38 -0.02 3.06 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.13 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 48 H 0.37 18.76 6.25 -92.70 -0.58 18.18 16 49 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -75.55 401.96 3.93 -71.62 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.36 Total: 30.91 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.78 Total: 15.30 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -5.19 Total: -138.97 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.55 3.93 -71.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054682932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.788 kcal (2) G-P(sol) polarization free energy of solvation -75.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds