Wall clock time and date at job start Tue Mar 31 2020 20:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46900 * 2 1 4 4 H 1.08994 * 109.47022 * 308.12399 * 3 2 1 5 5 C 1.50703 * 109.46710 * 188.12419 * 3 2 1 6 6 O 1.21273 * 120.00214 * 270.46985 * 5 3 2 7 7 N 1.34782 * 119.99684 * 90.47635 * 5 3 2 8 8 C 1.47021 * 125.64999 * 354.34917 * 7 5 3 9 9 C 1.54326 * 107.26936 * 178.98765 * 8 7 5 10 10 H 1.08992 * 110.86851 * 96.24569 * 9 8 7 11 11 N 1.46505 * 110.71549 * 219.44444 * 9 8 7 12 12 C 1.36928 * 120.00021 * 268.52038 * 11 9 8 13 13 H 1.08011 * 120.00357 * 0.02562 * 12 11 9 14 14 C 1.38811 * 120.00509 * 180.02562 * 12 11 9 15 15 N 1.31618 * 119.99583 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00650 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47321 * 89.99632 * 16 14 12 18 18 H 1.48497 * 109.47291 * 209.99538 * 16 14 12 19 19 H 1.48503 * 109.46950 * 329.99542 * 16 14 12 20 20 C 1.55156 * 102.94461 * 337.80587 * 9 8 7 21 21 H 1.08994 * 111.00234 * 153.61047 * 20 9 8 22 22 N 1.46498 * 111.00772 * 277.43299 * 20 9 8 23 23 C 1.35310 * 125.87419 * 85.31987 * 22 20 9 24 24 C 1.35352 * 106.17836 * 180.11995 * 23 22 20 25 25 N 1.33771 * 106.49463 * 359.59319 * 24 23 22 26 26 N 1.28642 * 108.88650 * 0.26345 * 25 24 23 27 27 C 1.47419 * 125.64459 * 174.40599 * 7 5 3 28 28 N 1.46896 * 109.47119 * 68.13039 * 3 2 1 29 29 C 1.46907 * 110.99496 * 276.37290 * 28 3 2 30 30 C 1.46897 * 111.00598 * 40.32599 * 28 3 2 31 31 H 1.08993 * 109.47018 * 169.35902 * 1 2 3 32 32 H 1.09009 * 109.46760 * 289.35966 * 1 2 3 33 33 H 1.09000 * 109.47239 * 49.35518 * 1 2 3 34 34 H 1.08994 * 109.46965 * 239.99898 * 2 1 3 35 35 H 1.08996 * 109.47031 * 120.00037 * 2 1 3 36 36 H 1.09004 * 109.88200 * 59.57291 * 8 7 5 37 37 H 1.08997 * 109.87977 * 298.40484 * 8 7 5 38 38 H 0.96995 * 119.99961 * 88.52910 * 11 9 8 39 39 H 0.97000 * 120.00331 * 180.02562 * 15 14 12 40 40 H 1.08004 * 126.90918 * 359.97438 * 23 22 20 41 41 H 1.08000 * 126.74995 * 179.85166 * 24 23 22 42 42 H 1.08994 * 110.36970 * 85.24360 * 27 7 5 43 43 H 1.09009 * 110.37083 * 322.91532 * 27 7 5 44 44 H 1.08997 * 109.46978 * 89.03280 * 29 28 3 45 45 H 1.09010 * 109.46762 * 209.02625 * 29 28 3 46 46 H 1.08998 * 109.47155 * 329.02202 * 29 28 3 47 47 H 1.09004 * 109.46959 * 60.00135 * 30 28 3 48 48 H 1.08996 * 109.47625 * 180.02562 * 30 28 3 49 49 H 1.09001 * 109.46644 * 300.00355 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5629 1.9965 -0.8084 5 6 3.5336 1.4472 -0.2008 6 8 4.2745 1.3911 0.7577 7 7 4.0459 1.5140 -1.4456 8 6 3.2715 1.4687 -2.6946 9 6 4.2739 1.6029 -3.8603 10 1 4.5456 0.6234 -4.2534 11 7 3.7245 2.4510 -4.9211 12 6 3.0190 1.8885 -5.9510 13 1 2.8671 0.8196 -5.9812 14 6 2.4989 2.6919 -6.9564 15 7 2.6835 3.9946 -6.9195 16 14 1.5359 1.9246 -8.3611 17 1 0.0960 1.8694 -8.0021 18 1 1.7093 2.7452 -9.5865 19 1 2.0367 0.5492 -8.6114 20 6 5.4965 2.2842 -3.1907 21 1 6.4180 2.0388 -3.7184 22 7 5.3108 3.7352 -3.1108 23 6 4.6580 4.3981 -2.1283 24 6 4.7239 5.7110 -2.4510 25 7 5.4125 5.7867 -3.5954 26 7 5.7459 4.5990 -3.9601 27 6 5.4758 1.6434 -1.7804 28 7 1.7168 2.0761 1.2853 29 6 0.3427 2.5957 1.2852 30 6 1.9265 1.1427 2.4000 31 1 -0.3633 -1.0099 -0.1898 32 1 -0.3633 0.3407 0.9697 33 1 -0.3634 0.6694 -0.7797 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.5606 2.2946 -2.7201 37 1 2.7422 0.5187 -2.7682 38 1 3.8607 3.4110 -4.8939 39 1 2.3198 4.5561 -7.6218 40 1 4.1786 3.9663 -1.2622 41 1 4.3065 6.5355 -1.8922 42 1 5.9505 0.6625 -1.8024 43 1 5.9766 2.2921 -1.0616 44 1 -0.3399 1.8179 1.6273 45 1 0.2790 3.4546 1.9535 46 1 0.0696 2.9005 0.2749 47 1 2.9698 0.8273 2.4184 48 1 1.6795 1.6371 3.3394 49 1 1.2856 0.2708 2.2692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070217546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:29 Heat of formation + Delta-G solvation = 118.066746 kcal Electronic energy + Delta-G solvation = -31464.158597 eV Core-core repulsion = 27465.524556 eV Total energy + Delta-G solvation = -3998.634041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.81908 -40.49424 -38.63903 -37.10696 -34.32500 -33.55557 -32.48441 -31.33677 -30.50727 -29.87099 -28.21238 -27.75000 -27.68368 -24.42667 -23.68793 -23.12525 -22.14513 -21.93273 -21.05016 -20.10306 -19.10443 -17.71191 -17.53629 -17.18742 -16.35765 -15.72293 -15.68298 -15.35898 -15.15043 -14.68583 -14.58436 -14.43090 -13.88198 -13.67564 -13.44420 -13.31630 -13.14064 -12.95451 -12.78178 -12.56124 -12.47286 -12.24011 -12.02894 -11.91275 -11.78055 -11.63078 -11.46288 -11.25897 -11.13413 -10.98885 -10.96056 -10.93532 -10.41277 -10.24556 -9.96504 -9.77324 -9.56354 -9.14443 -8.84700 -8.65170 -8.37025 -7.27324 -5.92528 -3.29022 2.11450 2.56464 2.71464 2.82419 3.13770 3.32506 3.37661 3.41079 3.90207 4.12374 4.41813 4.47250 4.58636 4.68216 4.70430 4.91760 4.96605 5.03375 5.12236 5.14120 5.21652 5.24572 5.32605 5.41078 5.41926 5.45951 5.48453 5.49995 5.51885 5.62802 5.67512 5.71307 5.72149 5.81835 5.86013 5.93697 5.99674 6.05105 6.21258 6.22585 6.33924 6.62162 6.76611 6.87409 7.07446 7.47597 7.51360 8.16320 8.20223 9.06826 9.33062 9.80952 10.15350 11.27032 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.004472 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.434178 B = 6259.755212 C = 7708.081390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.151 4.151 3 C 0.069 3.931 4 H 0.103 0.897 5 C 0.542 3.458 6 O -0.533 6.533 7 N -0.619 5.619 8 C 0.066 3.934 9 C 0.167 3.833 10 H 0.093 0.907 11 N -0.706 5.706 12 C -0.267 4.267 13 H 0.075 0.925 14 C 0.002 3.998 15 N -0.914 5.914 16 Si 0.910 3.090 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.111 3.889 21 H 0.132 0.868 22 N -0.269 5.269 23 C -0.045 4.045 24 C -0.058 4.058 25 N -0.272 5.272 26 N -0.065 5.065 27 C 0.106 3.894 28 N -0.524 5.524 29 C 0.018 3.982 30 C 0.015 3.985 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.394 0.606 39 H 0.260 0.740 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -7.565 16.570 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.191 4.191 3 C -0.043 4.043 4 H 0.121 0.879 5 C 0.330 3.670 6 O -0.409 6.409 7 N -0.355 5.355 8 C -0.060 4.060 9 C 0.052 3.948 10 H 0.111 0.889 11 N -0.347 5.347 12 C -0.398 4.398 13 H 0.093 0.907 14 C -0.197 4.197 15 N -0.559 5.559 16 Si 0.740 3.260 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.205 1.205 20 C 0.006 3.994 21 H 0.150 0.850 22 N -0.062 5.062 23 C -0.196 4.196 24 C -0.215 4.215 25 N -0.138 5.138 26 N -0.044 5.044 27 C -0.018 4.018 28 N -0.247 5.247 29 C -0.130 4.130 30 C -0.132 4.132 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.230 0.770 39 H 0.070 0.930 40 H 0.194 0.806 41 H 0.199 0.801 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.539 -7.033 15.720 17.230 hybrid contribution -1.919 -0.980 0.052 2.156 sum -2.459 -8.013 15.772 17.860 Atomic orbital electron populations 1.22034 0.94767 1.02420 1.02308 1.22115 0.97048 0.96145 1.03747 1.21815 0.92624 0.95792 0.94076 0.87925 1.20150 0.90259 0.75542 0.81037 1.90635 1.61291 1.49480 1.39466 1.48616 1.07663 1.73105 1.06087 1.23513 0.97031 1.02235 0.83206 1.21556 0.88877 0.95791 0.88560 0.88933 1.42424 1.63015 1.06595 1.22617 1.19160 1.27718 0.92363 1.00538 0.90727 1.24845 1.00557 0.95389 0.98889 1.69702 1.48407 1.02911 1.34843 0.86185 0.79743 0.78199 0.81908 1.21522 1.21530 1.20522 1.23347 1.03732 0.74424 0.97885 0.84997 1.47137 1.35339 1.08319 1.15418 1.23448 1.04886 0.93270 0.97988 1.23456 1.04909 0.96187 0.96973 1.75104 1.13789 1.13524 1.11376 1.78402 1.18957 0.92870 1.14190 1.22440 0.83844 1.01572 0.93951 1.61832 1.24495 1.36771 1.01622 1.22711 0.87851 0.99783 1.02642 1.22666 1.03221 0.94263 0.93073 0.92233 0.92082 0.92029 0.90806 0.90275 0.90563 0.91157 0.76968 0.93010 0.80611 0.80093 0.88656 0.89441 0.94202 0.91272 0.91519 0.89503 0.91772 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.67 37.16 0.32 -1.01 16 2 C -0.15 -1.48 4.86 -26.73 -0.13 -1.61 16 3 C 0.07 0.79 1.88 -68.86 -0.13 0.66 16 4 H 0.10 1.21 6.26 -51.93 -0.32 0.88 16 5 C 0.54 7.31 6.76 -10.98 -0.07 7.23 16 6 O -0.53 -8.52 15.01 5.56 0.08 -8.43 16 7 N -0.62 -7.94 2.18 -170.52 -0.37 -8.31 16 8 C 0.07 0.95 5.66 -3.06 -0.02 0.93 16 9 C 0.17 2.77 3.49 -66.09 -0.23 2.54 16 10 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 11 N -0.71 -16.16 5.11 -51.65 -0.26 -16.42 16 12 C -0.27 -6.81 9.96 -15.06 -0.15 -6.96 16 13 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 14 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 15 N -0.91 -27.02 13.06 55.49 0.72 -26.30 16 16 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.11 1.61 4.06 -65.78 -0.27 1.34 16 21 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 22 N -0.27 -4.68 2.43 -52.68 -0.13 -4.81 16 23 C -0.04 -0.74 10.01 -17.05 -0.17 -0.91 16 24 C -0.06 -1.00 12.05 -17.74 -0.21 -1.22 16 25 N -0.27 -5.66 12.41 30.24 0.38 -5.29 16 26 N -0.06 -1.35 12.28 60.35 0.74 -0.61 16 27 C 0.11 1.27 5.86 -2.53 -0.01 1.26 16 28 N -0.52 -5.89 4.73 -244.58 -1.16 -7.04 16 29 C 0.02 0.16 8.78 60.07 0.53 0.69 16 30 C 0.02 0.16 8.08 60.06 0.49 0.64 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 4.60 -51.92 -0.24 0.24 16 33 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 34 H 0.07 0.74 7.77 -51.93 -0.40 0.33 16 35 H 0.08 0.78 5.84 -51.93 -0.30 0.48 16 36 H 0.08 1.26 7.52 -51.93 -0.39 0.87 16 37 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 38 H 0.39 10.09 6.00 -40.82 -0.24 9.85 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.18 2.61 6.79 -52.48 -0.36 2.25 16 41 H 0.18 2.46 8.06 -52.49 -0.42 2.03 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.10 7.81 -51.92 -0.41 0.70 16 44 H 0.04 0.31 5.44 -51.93 -0.28 0.03 16 45 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 46 H 0.07 0.60 7.37 -51.93 -0.38 0.22 16 47 H 0.09 1.07 6.25 -51.93 -0.32 0.74 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.03 0.29 5.18 -51.93 -0.27 0.02 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -32.73 379.34 -6.71 -39.44 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.25 Total: 12.28 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.16 Total: 3.54 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.08 Total: -68.78 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.73 -6.71 -39.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070217546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.510 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds