Wall clock time and date at job start Tue Mar 31 2020 20:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46900 * 2 1 4 4 H 1.08994 * 109.47022 * 308.12399 * 3 2 1 5 5 C 1.50703 * 109.46710 * 188.12419 * 3 2 1 6 6 O 1.21273 * 120.00214 * 270.46985 * 5 3 2 7 7 N 1.34782 * 119.99684 * 90.47635 * 5 3 2 8 8 C 1.47021 * 125.64999 * 354.34917 * 7 5 3 9 9 C 1.54326 * 107.26936 * 178.98765 * 8 7 5 10 10 H 1.08992 * 110.86851 * 96.24569 * 9 8 7 11 11 N 1.46505 * 110.71549 * 219.44444 * 9 8 7 12 12 C 1.36928 * 120.00021 * 268.52038 * 11 9 8 13 13 H 1.08011 * 120.00357 * 0.02562 * 12 11 9 14 14 C 1.38811 * 120.00509 * 180.02562 * 12 11 9 15 15 N 1.31618 * 119.99583 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00650 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47321 * 89.99632 * 16 14 12 18 18 H 1.48497 * 109.47291 * 209.99538 * 16 14 12 19 19 H 1.48503 * 109.46950 * 329.99542 * 16 14 12 20 20 C 1.55156 * 102.94461 * 337.80587 * 9 8 7 21 21 H 1.08994 * 111.00234 * 153.61047 * 20 9 8 22 22 N 1.46498 * 111.00772 * 277.43299 * 20 9 8 23 23 C 1.35310 * 125.87419 * 85.31987 * 22 20 9 24 24 C 1.35352 * 106.17836 * 180.11995 * 23 22 20 25 25 N 1.33771 * 106.49463 * 359.59319 * 24 23 22 26 26 N 1.28642 * 108.88650 * 0.26345 * 25 24 23 27 27 C 1.47419 * 125.64459 * 174.40599 * 7 5 3 28 28 N 1.46896 * 109.47119 * 68.13039 * 3 2 1 29 29 C 1.46907 * 110.99496 * 276.37290 * 28 3 2 30 30 C 1.46897 * 111.00598 * 40.32599 * 28 3 2 31 31 H 1.08993 * 109.47018 * 169.35902 * 1 2 3 32 32 H 1.09009 * 109.46760 * 289.35966 * 1 2 3 33 33 H 1.09000 * 109.47239 * 49.35518 * 1 2 3 34 34 H 1.08994 * 109.46965 * 239.99898 * 2 1 3 35 35 H 1.08996 * 109.47031 * 120.00037 * 2 1 3 36 36 H 1.09004 * 109.88200 * 59.57291 * 8 7 5 37 37 H 1.08997 * 109.87977 * 298.40484 * 8 7 5 38 38 H 0.96995 * 119.99961 * 88.52910 * 11 9 8 39 39 H 0.97000 * 120.00331 * 180.02562 * 15 14 12 40 40 H 1.08004 * 126.90918 * 359.97438 * 23 22 20 41 41 H 1.08000 * 126.74995 * 179.85166 * 24 23 22 42 42 H 1.08994 * 110.36970 * 85.24360 * 27 7 5 43 43 H 1.09009 * 110.37083 * 322.91532 * 27 7 5 44 44 H 1.08997 * 109.46978 * 89.03280 * 29 28 3 45 45 H 1.09010 * 109.46762 * 209.02625 * 29 28 3 46 46 H 1.08998 * 109.47155 * 329.02202 * 29 28 3 47 47 H 1.09004 * 109.46959 * 60.00135 * 30 28 3 48 48 H 1.08996 * 109.47625 * 180.02562 * 30 28 3 49 49 H 1.09001 * 109.46644 * 300.00355 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5629 1.9965 -0.8084 5 6 3.5336 1.4472 -0.2008 6 8 4.2745 1.3911 0.7577 7 7 4.0459 1.5140 -1.4456 8 6 3.2715 1.4687 -2.6946 9 6 4.2739 1.6029 -3.8603 10 1 4.5456 0.6234 -4.2534 11 7 3.7245 2.4510 -4.9211 12 6 3.0190 1.8885 -5.9510 13 1 2.8671 0.8196 -5.9812 14 6 2.4989 2.6919 -6.9564 15 7 2.6835 3.9946 -6.9195 16 14 1.5359 1.9246 -8.3611 17 1 0.0960 1.8694 -8.0021 18 1 1.7093 2.7452 -9.5865 19 1 2.0367 0.5492 -8.6114 20 6 5.4965 2.2842 -3.1907 21 1 6.4180 2.0388 -3.7184 22 7 5.3108 3.7352 -3.1108 23 6 4.6580 4.3981 -2.1283 24 6 4.7239 5.7110 -2.4510 25 7 5.4125 5.7867 -3.5954 26 7 5.7459 4.5990 -3.9601 27 6 5.4758 1.6434 -1.7804 28 7 1.7168 2.0761 1.2853 29 6 0.3427 2.5957 1.2852 30 6 1.9265 1.1427 2.4000 31 1 -0.3633 -1.0099 -0.1898 32 1 -0.3633 0.3407 0.9697 33 1 -0.3634 0.6694 -0.7797 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.5606 2.2946 -2.7201 37 1 2.7422 0.5187 -2.7682 38 1 3.8607 3.4110 -4.8939 39 1 2.3198 4.5561 -7.6218 40 1 4.1786 3.9663 -1.2622 41 1 4.3065 6.5355 -1.8922 42 1 5.9505 0.6625 -1.8024 43 1 5.9766 2.2921 -1.0616 44 1 -0.3399 1.8179 1.6273 45 1 0.2790 3.4546 1.9535 46 1 0.0696 2.9005 0.2749 47 1 2.9698 0.8273 2.4184 48 1 1.6795 1.6371 3.3394 49 1 1.2856 0.2708 2.2692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070217546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:28 Heat of formation + Delta-G solvation = 94.530915 kcal Electronic energy + Delta-G solvation = -31465.179187 eV Core-core repulsion = 27465.524556 eV Total energy + Delta-G solvation = -3999.654631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.21479 -41.54600 -39.71724 -38.18441 -35.96265 -34.90440 -33.31135 -33.04836 -31.88857 -31.09667 -29.28032 -28.96530 -28.52302 -25.95121 -25.13496 -23.88408 -23.56861 -23.21625 -22.07314 -21.42345 -20.15444 -19.41150 -18.78791 -18.35469 -17.23619 -17.11674 -16.78303 -16.66794 -16.24651 -16.03727 -15.88930 -15.46689 -15.25906 -15.13706 -14.76818 -14.57133 -14.12415 -13.90861 -13.82714 -13.65072 -13.40330 -13.27200 -13.07187 -12.92808 -12.85837 -12.76284 -12.62852 -12.56971 -12.49711 -12.39154 -12.27298 -12.08943 -11.89671 -11.78621 -11.69078 -11.20057 -10.89894 -10.73979 -10.25469 -9.76180 -9.18671 -9.14437 -7.95007 -5.29531 0.73108 1.44604 1.48688 1.50101 1.52425 1.58456 1.71229 1.77218 2.53465 2.97522 3.09298 3.26092 3.49527 3.56875 3.67669 3.71101 3.78946 3.93293 4.05205 4.10094 4.21628 4.24491 4.28081 4.37146 4.37651 4.39750 4.47115 4.52233 4.57889 4.67119 4.69556 4.78253 4.80804 4.90576 4.97254 5.01969 5.04213 5.07238 5.12502 5.18619 5.29577 5.34849 5.51086 5.74546 5.94509 6.10113 6.20677 6.39760 7.10348 7.29890 7.62675 7.98346 8.19883 9.26369 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.004472 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.434178 B = 6259.755212 C = 7708.081390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.146 4.146 3 C 0.072 3.928 4 H 0.098 0.902 5 C 0.543 3.457 6 O -0.557 6.557 7 N -0.614 5.614 8 C 0.086 3.914 9 C 0.159 3.841 10 H 0.114 0.886 11 N -0.726 5.726 12 C -0.248 4.248 13 H 0.092 0.908 14 C -0.068 4.068 15 N -0.964 5.964 16 Si 0.972 3.028 17 H -0.287 1.287 18 H -0.305 1.305 19 H -0.262 1.262 20 C 0.107 3.893 21 H 0.147 0.853 22 N -0.262 5.262 23 C -0.036 4.036 24 C -0.065 4.065 25 N -0.309 5.309 26 N -0.105 5.105 27 C 0.114 3.886 28 N -0.542 5.542 29 C 0.019 3.981 30 C 0.020 3.980 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.378 0.622 39 H 0.248 0.752 40 H 0.193 0.807 41 H 0.212 0.788 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 -9.978 18.193 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C -0.040 4.040 4 H 0.116 0.884 5 C 0.332 3.668 6 O -0.434 6.434 7 N -0.349 5.349 8 C -0.040 4.040 9 C 0.046 3.954 10 H 0.131 0.869 11 N -0.366 5.366 12 C -0.380 4.380 13 H 0.110 0.890 14 C -0.261 4.261 15 N -0.613 5.613 16 Si 0.801 3.199 17 H -0.214 1.214 18 H -0.233 1.233 19 H -0.187 1.187 20 C 0.004 3.996 21 H 0.164 0.836 22 N -0.056 5.056 23 C -0.188 4.188 24 C -0.222 4.222 25 N -0.174 5.174 26 N -0.084 5.084 27 C -0.009 4.009 28 N -0.266 5.266 29 C -0.128 4.128 30 C -0.128 4.128 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.212 0.788 39 H 0.057 0.943 40 H 0.210 0.790 41 H 0.229 0.771 42 H 0.147 0.853 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.239 -9.521 17.375 19.851 hybrid contribution -1.649 -0.289 -0.294 1.700 sum -2.888 -9.811 17.080 19.908 Atomic orbital electron populations 1.21998 0.93610 1.02931 1.02549 1.22082 0.97955 0.94803 1.03703 1.21790 0.91077 0.96905 0.94238 0.88378 1.20526 0.91026 0.74732 0.80539 1.90636 1.62075 1.50664 1.40037 1.48561 1.07836 1.72960 1.05588 1.23051 0.95809 1.02338 0.82807 1.21882 0.89670 0.95877 0.87941 0.86864 1.42589 1.63535 1.06523 1.23908 1.19663 1.25217 0.93008 1.00073 0.88972 1.25620 1.02892 0.95717 1.01874 1.69891 1.51194 1.04503 1.35678 0.85178 0.78429 0.77780 0.78515 1.21394 1.23259 1.18659 1.23587 1.03393 0.73017 0.99593 0.83563 1.47351 1.34474 1.09034 1.14777 1.23702 1.04068 0.93049 0.97932 1.24071 1.04231 0.97716 0.96191 1.75041 1.15248 1.14082 1.13027 1.78325 1.20846 0.93543 1.15669 1.22539 0.83546 1.02909 0.91923 1.61814 1.25888 1.37235 1.01633 1.22727 0.87037 1.00318 1.02729 1.22600 1.02158 0.94777 0.93231 0.91320 0.91431 0.92466 0.90846 0.90287 0.92776 0.89268 0.78822 0.94270 0.78989 0.77083 0.85335 0.89584 0.92725 0.90890 0.91733 0.91617 0.90858 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.67 71.98 0.62 -1.55 16 2 C -0.15 -2.49 4.86 30.60 0.15 -2.34 16 3 C 0.07 1.50 1.88 44.17 0.08 1.58 16 4 H 0.10 2.14 6.26 -2.39 -0.01 2.13 16 5 C 0.54 13.48 6.76 87.66 0.59 14.07 16 6 O -0.56 -16.76 15.01 -3.01 -0.05 -16.81 16 7 N -0.61 -14.23 2.18 -811.78 -1.77 -16.00 16 8 C 0.09 2.26 5.66 86.73 0.49 2.75 16 9 C 0.16 4.93 3.49 46.18 0.16 5.09 16 10 H 0.11 3.09 8.09 -2.39 -0.02 3.07 16 11 N -0.73 -32.83 5.11 -317.32 -1.62 -34.46 16 12 C -0.25 -12.42 9.96 84.03 0.84 -11.58 16 13 H 0.09 4.18 7.83 -2.90 -0.02 4.16 16 14 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 15 N -0.96 -58.77 13.06 21.65 0.28 -58.48 16 16 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 17 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.31 -14.47 7.11 99.48 0.71 -13.77 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 C 0.11 2.93 4.06 46.39 0.19 3.12 16 21 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 22 N -0.26 -9.01 2.43 -320.58 -0.78 -9.79 16 23 C -0.04 -1.14 10.01 83.49 0.84 -0.31 16 24 C -0.06 -2.21 12.05 83.73 1.01 -1.20 16 25 N -0.31 -13.14 12.41 -58.26 -0.72 -13.87 16 26 N -0.10 -4.47 12.28 37.02 0.45 -4.02 16 27 C 0.11 2.43 5.86 86.86 0.51 2.94 16 28 N -0.54 -11.15 4.73 -927.72 -4.39 -15.54 16 29 C 0.02 0.31 8.78 127.69 1.12 1.43 16 30 C 0.02 0.37 8.08 127.69 1.03 1.40 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.86 4.60 -2.38 -0.01 0.85 16 33 H 0.06 0.87 8.04 -2.39 -0.02 0.85 16 34 H 0.07 1.25 7.77 -2.39 -0.02 1.24 16 35 H 0.08 1.37 5.84 -2.39 -0.01 1.35 16 36 H 0.05 1.72 7.52 -2.38 -0.02 1.70 16 37 H 0.09 2.05 7.79 -2.39 -0.02 2.03 16 38 H 0.38 19.63 6.00 -92.71 -0.56 19.07 16 39 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.19 5.40 6.79 -2.91 -0.02 5.38 16 41 H 0.21 5.52 8.06 -2.91 -0.02 5.50 16 42 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.09 1.95 7.81 -2.38 -0.02 1.93 16 44 H 0.05 0.71 5.44 -2.39 -0.01 0.70 16 45 H 0.07 1.11 8.14 -2.38 -0.02 1.10 16 46 H 0.06 1.06 7.37 -2.39 -0.02 1.04 16 47 H 0.07 1.52 6.25 -2.38 -0.01 1.51 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.05 0.71 5.18 -2.39 -0.01 0.70 16 Total: -1.00 -72.73 379.34 1.95 -70.78 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: 0.42 Total: 40.02 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 8.10 Total: 12.15 kcal Atomic # 7 Polarization: -143.60 SS G_CDS: -8.55 Total: -152.15 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.73 1.95 -70.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070217546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.307 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds