Wall clock time and date at job start Tue Mar 31 2020 20:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53012 * 109.47021 * 2 1 4 4 H 1.08998 * 109.46929 * 58.09803 * 3 2 1 5 5 C 1.50695 * 109.46959 * 178.10035 * 3 2 1 6 6 O 1.21284 * 120.00230 * 99.11232 * 5 3 2 7 7 N 1.34780 * 120.00170 * 279.10428 * 5 3 2 8 8 C 1.47430 * 125.64475 * 0.04735 * 7 5 3 9 9 C 1.54907 * 104.83080 * 204.08786 * 8 7 5 10 10 H 1.09005 * 111.00005 * 81.06476 * 9 8 7 11 11 N 1.46498 * 111.00620 * 204.91576 * 9 8 7 12 12 C 1.36934 * 120.00013 * 267.19993 * 11 9 8 13 13 H 1.07998 * 120.00406 * 359.97438 * 12 11 9 14 14 C 1.38820 * 119.99795 * 179.97438 * 12 11 9 15 15 N 1.31617 * 119.99816 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99936 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47340 * 90.00161 * 16 14 12 18 18 H 1.48503 * 109.47007 * 209.99860 * 16 14 12 19 19 H 1.48499 * 109.47300 * 330.00060 * 16 14 12 20 20 C 1.55157 * 101.58201 * 322.99325 * 9 8 7 21 21 H 1.09004 * 110.86970 * 153.93408 * 20 9 8 22 22 N 1.46497 * 110.72022 * 277.13601 * 20 9 8 23 23 C 1.35311 * 125.86661 * 79.69329 * 22 20 9 24 24 C 1.35358 * 106.17081 * 179.90543 * 23 22 20 25 25 N 1.33766 * 106.49781 * 0.34986 * 24 23 22 26 26 N 1.28638 * 108.88688 * 359.77479 * 25 24 23 27 27 C 1.47020 * 125.65263 * 180.02562 * 7 5 3 28 28 N 1.46898 * 109.46819 * 298.09832 * 3 2 1 29 29 C 1.46894 * 110.99890 * 182.64531 * 28 3 2 30 30 C 1.46904 * 111.00090 * 306.60503 * 28 3 2 31 31 H 1.08998 * 109.47051 * 306.28742 * 1 2 3 32 32 H 1.08996 * 109.47347 * 66.29133 * 1 2 3 33 33 H 1.09002 * 109.46612 * 186.28921 * 1 2 3 34 34 H 1.08993 * 109.47514 * 240.00234 * 2 1 3 35 35 H 1.09003 * 109.47161 * 119.99571 * 2 1 3 36 36 H 1.08999 * 110.36595 * 322.93132 * 8 7 5 37 37 H 1.09001 * 110.36150 * 85.25289 * 8 7 5 38 38 H 0.96999 * 119.99570 * 87.19541 * 11 9 8 39 39 H 0.97002 * 119.99600 * 180.02562 * 15 14 12 40 40 H 1.07998 * 126.91423 * 0.02562 * 23 22 20 41 41 H 1.07998 * 126.74568 * 180.12300 * 24 23 22 42 42 H 1.09001 * 109.87812 * 59.55709 * 27 7 5 43 43 H 1.08994 * 110.00951 * 298.47073 * 27 7 5 44 44 H 1.09000 * 109.46820 * 60.00580 * 29 28 3 45 45 H 1.09003 * 109.47516 * 179.97438 * 29 28 3 46 46 H 1.08999 * 109.47855 * 300.00420 * 29 28 3 47 47 H 1.08999 * 109.47334 * 53.20292 * 30 28 3 48 48 H 1.09001 * 109.46634 * 173.20247 * 30 28 3 49 49 H 1.08997 * 109.46675 * 293.20043 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6490 1.9662 0.8724 5 6 3.5462 1.4429 0.0471 6 8 4.1848 1.5978 -0.9723 7 7 4.1837 1.2710 1.2221 8 6 3.5346 1.0721 2.5307 9 6 4.5841 1.5409 3.5693 10 1 4.5756 2.6262 3.6706 11 7 4.3664 0.8929 4.8650 12 6 3.5942 1.5053 5.8156 13 1 3.1460 2.4662 5.6104 14 6 3.3876 0.8911 7.0433 15 7 2.6449 1.4795 7.9568 16 14 4.1635 -0.7706 7.3985 17 1 5.5048 -0.5713 8.0040 18 1 3.3020 -1.5275 8.3421 19 1 4.3004 -1.5339 6.1321 20 6 5.9055 1.0533 2.9186 21 1 6.7476 1.6635 3.2455 22 7 6.1427 -0.3598 3.2233 23 6 5.5625 -1.4129 2.6026 24 6 6.0652 -2.5223 3.1930 25 7 6.9113 -2.0991 4.1387 26 7 6.9348 -0.8129 4.1311 27 6 5.6416 1.2505 1.4110 28 7 1.5882 2.1216 -1.2218 29 6 2.1121 3.4924 -1.2866 30 6 1.9639 1.3571 -2.4186 31 1 -0.3633 0.6082 0.8283 32 1 -0.3634 0.4132 -0.9409 33 1 -0.3632 -1.0215 0.1126 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.6322 1.6791 2.6027 37 1 3.2973 0.0188 2.6802 38 1 4.7693 0.0300 5.0494 39 1 2.5009 1.0504 8.8148 40 1 4.8444 -1.3758 1.7968 41 1 5.8270 -3.5475 2.9508 42 1 6.0716 2.1956 1.0796 43 1 6.0791 0.4265 0.8474 44 1 3.2018 3.4653 -1.2845 45 1 1.7629 3.9721 -2.2010 46 1 1.7611 4.0570 -0.4228 47 1 1.6065 0.3319 -2.3219 48 1 1.5149 1.8169 -3.2991 49 1 3.0488 1.3555 -2.5228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070277171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:34 Heat of formation + Delta-G solvation = 115.218794 kcal Electronic energy + Delta-G solvation = -31484.119455 eV Core-core repulsion = 27485.361918 eV Total energy + Delta-G solvation = -3998.757538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.18353 -40.79939 -38.73070 -36.67818 -34.62088 -33.90790 -33.04580 -31.58982 -30.88413 -30.07038 -28.27706 -27.83302 -27.41912 -24.52755 -23.69787 -23.31516 -22.47715 -21.98152 -21.06465 -20.41164 -19.22841 -18.26686 -17.66581 -17.48099 -16.28409 -16.02010 -15.82390 -15.54946 -15.13352 -14.93091 -14.73972 -14.33942 -14.04904 -13.89590 -13.72019 -13.54336 -13.26666 -13.05132 -12.88773 -12.65235 -12.40598 -12.18751 -12.06567 -11.94938 -11.72024 -11.60370 -11.57757 -11.48790 -11.27557 -11.13238 -10.99122 -10.84599 -10.76222 -10.40266 -10.30345 -9.98386 -9.77307 -9.26828 -9.19377 -8.83475 -8.31075 -7.63449 -6.00861 -3.42560 1.75451 2.35189 2.40841 2.74427 2.77532 3.29589 3.34016 3.42541 3.74788 3.92603 4.31978 4.41725 4.48581 4.56893 4.64117 4.70891 4.83285 4.95638 5.00494 5.08007 5.18231 5.25310 5.27464 5.32108 5.36783 5.36927 5.39658 5.43963 5.47711 5.54458 5.57845 5.73840 5.79686 5.81688 5.84307 5.89304 5.93008 5.98563 6.04016 6.13891 6.22495 6.28407 6.71015 6.72818 6.81095 7.28923 7.66032 7.94291 8.15413 8.69942 8.88900 9.62668 9.75247 11.15101 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.004284 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.722787 B = 6534.350928 C = 7518.990572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.109 0.891 5 C 0.507 3.493 6 O -0.544 6.544 7 N -0.613 5.613 8 C 0.064 3.936 9 C 0.174 3.826 10 H 0.103 0.897 11 N -0.728 5.728 12 C -0.268 4.268 13 H 0.097 0.903 14 C 0.023 3.977 15 N -0.919 5.919 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.279 1.279 20 C 0.109 3.891 21 H 0.136 0.864 22 N -0.271 5.271 23 C -0.046 4.046 24 C -0.055 4.055 25 N -0.275 5.275 26 N -0.075 5.075 27 C 0.105 3.895 28 N -0.512 5.512 29 C 0.011 3.989 30 C -0.002 4.002 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.369 0.631 39 H 0.264 0.736 40 H 0.181 0.819 41 H 0.186 0.814 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -1.229 -19.334 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.043 4.043 4 H 0.126 0.874 5 C 0.295 3.705 6 O -0.422 6.422 7 N -0.348 5.348 8 C -0.062 4.062 9 C 0.060 3.940 10 H 0.121 0.879 11 N -0.369 5.369 12 C -0.397 4.397 13 H 0.114 0.886 14 C -0.175 4.175 15 N -0.564 5.564 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.205 1.205 20 C 0.005 3.995 21 H 0.154 0.846 22 N -0.065 5.065 23 C -0.197 4.197 24 C -0.212 4.212 25 N -0.141 5.141 26 N -0.055 5.055 27 C -0.020 4.020 28 N -0.235 5.235 29 C -0.137 4.137 30 C -0.149 4.149 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.204 0.796 39 H 0.074 0.926 40 H 0.198 0.802 41 H 0.203 0.797 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.032 -0.560 -18.610 18.619 hybrid contribution 0.486 -1.462 -0.457 1.606 sum 0.517 -2.022 -19.067 19.181 Atomic orbital electron populations 1.21633 0.93832 1.01370 1.02946 1.21591 0.97909 0.93009 1.02792 1.22017 0.88235 0.98019 0.96035 0.87363 1.21880 0.91433 0.75593 0.81634 1.90611 1.68600 1.50453 1.32564 1.48788 1.06535 1.71224 1.08270 1.23683 0.99194 1.02262 0.81072 1.21650 0.87986 0.98509 0.85900 0.87938 1.42666 1.60571 1.22528 1.11141 1.18975 1.24055 1.03859 0.92799 0.88572 1.24633 0.98766 0.98046 0.96045 1.69688 1.41295 1.38978 1.06427 0.86658 0.79534 0.84837 0.78130 1.20296 1.21331 1.20532 1.23301 1.03509 0.76914 0.95784 0.84603 1.47318 1.27970 1.08097 1.23105 1.23484 1.04831 0.86964 1.04410 1.23530 1.00041 1.00198 0.97457 1.75105 1.18657 1.01757 1.18570 1.78380 1.12539 1.05602 1.08970 1.22143 0.83067 1.03804 0.92978 1.62514 1.56827 1.02663 1.01467 1.22539 0.99431 0.89283 1.02492 1.22775 1.02048 0.98306 0.91812 0.92280 0.91691 0.92870 0.91117 0.90961 0.89361 0.90819 0.79580 0.92581 0.80183 0.79688 0.88750 0.90321 0.93686 0.91317 0.91591 0.91415 0.92009 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.67 37.16 0.36 -0.89 16 2 C -0.12 -1.10 4.93 -26.73 -0.13 -1.23 16 3 C 0.07 0.74 1.75 -68.86 -0.12 0.62 16 4 H 0.11 1.16 6.88 -51.93 -0.36 0.80 16 5 C 0.51 6.13 6.18 -10.99 -0.07 6.07 16 6 O -0.54 -7.81 12.43 5.55 0.07 -7.74 16 7 N -0.61 -7.07 3.33 -170.53 -0.57 -7.64 16 8 C 0.06 0.83 5.49 -2.53 -0.01 0.82 16 9 C 0.17 2.69 3.58 -65.78 -0.24 2.46 16 10 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 11 N -0.73 -15.43 5.01 -51.35 -0.26 -15.68 16 12 C -0.27 -6.88 10.44 -15.06 -0.16 -7.04 16 13 H 0.10 2.58 8.06 -52.49 -0.42 2.15 16 14 C 0.02 0.65 5.50 -17.43 -0.10 0.55 16 15 N -0.92 -27.37 13.97 55.49 0.78 -26.60 16 16 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 17 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.28 -6.96 6.52 56.52 0.37 -6.60 16 20 C 0.11 1.43 3.97 -66.10 -0.26 1.16 16 21 H 0.14 1.61 8.14 -51.93 -0.42 1.19 16 22 N -0.27 -4.17 2.23 -52.99 -0.12 -4.29 16 23 C -0.05 -0.63 9.23 -17.04 -0.16 -0.79 16 24 C -0.06 -0.81 12.05 -17.74 -0.21 -1.02 16 25 N -0.28 -5.09 12.41 30.23 0.38 -4.71 16 26 N -0.08 -1.41 12.58 60.35 0.76 -0.65 16 27 C 0.10 1.15 5.95 -3.07 -0.02 1.13 16 28 N -0.51 -5.45 4.50 -244.58 -1.10 -6.55 16 29 C 0.01 0.11 9.21 60.06 0.55 0.66 16 30 C 0.00 -0.02 8.85 60.07 0.53 0.51 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.67 6.06 -51.93 -0.31 0.36 16 35 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 36 H 0.09 1.14 6.90 -51.93 -0.36 0.78 16 37 H 0.07 1.03 6.92 -51.93 -0.36 0.67 16 38 H 0.37 8.28 4.08 -40.82 -0.17 8.11 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.18 2.01 7.56 -52.49 -0.40 1.62 16 41 H 0.19 2.03 8.06 -52.49 -0.42 1.61 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.88 7.43 -51.93 -0.39 0.49 16 44 H 0.04 0.54 5.92 -51.93 -0.31 0.24 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.64 5.76 -51.93 -0.30 0.34 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.80 5.50 -51.93 -0.29 0.52 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -32.42 379.66 -6.51 -38.94 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.42 Total: 8.59 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.03 Total: 3.01 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -0.13 Total: -66.12 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.07 Total: -7.74 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.42 -6.51 -38.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070277171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.157 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds