Wall clock time and date at job start Tue Mar 31 2020 20:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53012 * 109.47021 * 2 1 4 4 H 1.08998 * 109.46929 * 58.09803 * 3 2 1 5 5 C 1.50695 * 109.46959 * 178.10035 * 3 2 1 6 6 O 1.21284 * 120.00230 * 99.11232 * 5 3 2 7 7 N 1.34780 * 120.00170 * 279.10428 * 5 3 2 8 8 C 1.47430 * 125.64475 * 0.04735 * 7 5 3 9 9 C 1.54907 * 104.83080 * 204.08786 * 8 7 5 10 10 H 1.09005 * 111.00005 * 81.06476 * 9 8 7 11 11 N 1.46498 * 111.00620 * 204.91576 * 9 8 7 12 12 C 1.36934 * 120.00013 * 267.19993 * 11 9 8 13 13 H 1.07998 * 120.00406 * 359.97438 * 12 11 9 14 14 C 1.38820 * 119.99795 * 179.97438 * 12 11 9 15 15 N 1.31617 * 119.99816 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99936 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47340 * 90.00161 * 16 14 12 18 18 H 1.48503 * 109.47007 * 209.99860 * 16 14 12 19 19 H 1.48499 * 109.47300 * 330.00060 * 16 14 12 20 20 C 1.55157 * 101.58201 * 322.99325 * 9 8 7 21 21 H 1.09004 * 110.86970 * 153.93408 * 20 9 8 22 22 N 1.46497 * 110.72022 * 277.13601 * 20 9 8 23 23 C 1.35311 * 125.86661 * 79.69329 * 22 20 9 24 24 C 1.35358 * 106.17081 * 179.90543 * 23 22 20 25 25 N 1.33766 * 106.49781 * 0.34986 * 24 23 22 26 26 N 1.28638 * 108.88688 * 359.77479 * 25 24 23 27 27 C 1.47020 * 125.65263 * 180.02562 * 7 5 3 28 28 N 1.46898 * 109.46819 * 298.09832 * 3 2 1 29 29 C 1.46894 * 110.99890 * 182.64531 * 28 3 2 30 30 C 1.46904 * 111.00090 * 306.60503 * 28 3 2 31 31 H 1.08998 * 109.47051 * 306.28742 * 1 2 3 32 32 H 1.08996 * 109.47347 * 66.29133 * 1 2 3 33 33 H 1.09002 * 109.46612 * 186.28921 * 1 2 3 34 34 H 1.08993 * 109.47514 * 240.00234 * 2 1 3 35 35 H 1.09003 * 109.47161 * 119.99571 * 2 1 3 36 36 H 1.08999 * 110.36595 * 322.93132 * 8 7 5 37 37 H 1.09001 * 110.36150 * 85.25289 * 8 7 5 38 38 H 0.96999 * 119.99570 * 87.19541 * 11 9 8 39 39 H 0.97002 * 119.99600 * 180.02562 * 15 14 12 40 40 H 1.07998 * 126.91423 * 0.02562 * 23 22 20 41 41 H 1.07998 * 126.74568 * 180.12300 * 24 23 22 42 42 H 1.09001 * 109.87812 * 59.55709 * 27 7 5 43 43 H 1.08994 * 110.00951 * 298.47073 * 27 7 5 44 44 H 1.09000 * 109.46820 * 60.00580 * 29 28 3 45 45 H 1.09003 * 109.47516 * 179.97438 * 29 28 3 46 46 H 1.08999 * 109.47855 * 300.00420 * 29 28 3 47 47 H 1.08999 * 109.47334 * 53.20292 * 30 28 3 48 48 H 1.09001 * 109.46634 * 173.20247 * 30 28 3 49 49 H 1.08997 * 109.46675 * 293.20043 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6490 1.9662 0.8724 5 6 3.5462 1.4429 0.0471 6 8 4.1848 1.5978 -0.9723 7 7 4.1837 1.2710 1.2221 8 6 3.5346 1.0721 2.5307 9 6 4.5841 1.5409 3.5693 10 1 4.5756 2.6262 3.6706 11 7 4.3664 0.8929 4.8650 12 6 3.5942 1.5053 5.8156 13 1 3.1460 2.4662 5.6104 14 6 3.3876 0.8911 7.0433 15 7 2.6449 1.4795 7.9568 16 14 4.1635 -0.7706 7.3985 17 1 5.5048 -0.5713 8.0040 18 1 3.3020 -1.5275 8.3421 19 1 4.3004 -1.5339 6.1321 20 6 5.9055 1.0533 2.9186 21 1 6.7476 1.6635 3.2455 22 7 6.1427 -0.3598 3.2233 23 6 5.5625 -1.4129 2.6026 24 6 6.0652 -2.5223 3.1930 25 7 6.9113 -2.0991 4.1387 26 7 6.9348 -0.8129 4.1311 27 6 5.6416 1.2505 1.4110 28 7 1.5882 2.1216 -1.2218 29 6 2.1121 3.4924 -1.2866 30 6 1.9639 1.3571 -2.4186 31 1 -0.3633 0.6082 0.8283 32 1 -0.3634 0.4132 -0.9409 33 1 -0.3632 -1.0215 0.1126 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.6322 1.6791 2.6027 37 1 3.2973 0.0188 2.6802 38 1 4.7693 0.0300 5.0494 39 1 2.5009 1.0504 8.8148 40 1 4.8444 -1.3758 1.7968 41 1 5.8270 -3.5475 2.9508 42 1 6.0716 2.1956 1.0796 43 1 6.0791 0.4265 0.8474 44 1 3.2018 3.4653 -1.2845 45 1 1.7629 3.9721 -2.2010 46 1 1.7611 4.0570 -0.4228 47 1 1.6065 0.3319 -2.3219 48 1 1.5149 1.8169 -3.2991 49 1 3.0488 1.3555 -2.5228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070277171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:32 Heat of formation + Delta-G solvation = 91.610588 kcal Electronic energy + Delta-G solvation = -31485.143184 eV Core-core repulsion = 27485.361918 eV Total energy + Delta-G solvation = -3999.781266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.37302 -41.77508 -39.81450 -37.64199 -36.16973 -35.14330 -33.87583 -33.42275 -32.04620 -31.21795 -29.59101 -28.70380 -28.23119 -25.82745 -25.13623 -24.13963 -23.70339 -23.19168 -22.05931 -21.61176 -20.28540 -19.93302 -18.79971 -18.53690 -17.34288 -17.18806 -16.87370 -16.61517 -16.43452 -16.08139 -15.86792 -15.61152 -15.30711 -15.00500 -14.89403 -14.71599 -14.49406 -14.19031 -14.03382 -13.85461 -13.33384 -13.26059 -13.16394 -12.98668 -12.97295 -12.75877 -12.73150 -12.58963 -12.53637 -12.40765 -12.20489 -11.97124 -11.91700 -11.89895 -11.61101 -11.38934 -11.25093 -11.02155 -10.37977 -9.88400 -9.51524 -9.17294 -8.13261 -5.48175 0.58422 1.25425 1.27201 1.32671 1.35999 1.43434 1.58704 1.74807 2.35263 2.84013 2.93500 3.09878 3.32993 3.39621 3.56685 3.59574 3.81072 3.85046 3.93160 4.04473 4.09063 4.15097 4.24246 4.25371 4.43829 4.46780 4.50796 4.58843 4.61760 4.68180 4.72165 4.76731 4.81656 4.89772 4.94991 4.97693 5.03431 5.12870 5.20374 5.21230 5.25064 5.51954 5.58191 5.67391 5.88411 5.99558 6.10292 6.29711 6.92457 6.98631 7.48109 7.66428 7.80210 9.06677 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.004284 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.722787 B = 6534.350928 C = 7518.990572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.070 3.930 4 H 0.109 0.891 5 C 0.510 3.490 6 O -0.563 6.563 7 N -0.607 5.607 8 C 0.081 3.919 9 C 0.163 3.837 10 H 0.110 0.890 11 N -0.738 5.738 12 C -0.230 4.230 13 H 0.083 0.917 14 C -0.036 4.036 15 N -0.966 5.966 16 Si 0.930 3.070 17 H -0.292 1.292 18 H -0.292 1.292 19 H -0.273 1.273 20 C 0.114 3.886 21 H 0.148 0.852 22 N -0.271 5.271 23 C -0.036 4.036 24 C -0.060 4.060 25 N -0.311 5.311 26 N -0.116 5.116 27 C 0.113 3.887 28 N -0.514 5.514 29 C 0.013 3.987 30 C 0.003 3.997 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.364 0.636 39 H 0.259 0.741 40 H 0.209 0.791 41 H 0.219 0.781 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 -1.753 -21.883 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.043 4.043 4 H 0.127 0.873 5 C 0.299 3.701 6 O -0.442 6.442 7 N -0.341 5.341 8 C -0.045 4.045 9 C 0.051 3.949 10 H 0.127 0.873 11 N -0.380 5.380 12 C -0.360 4.360 13 H 0.101 0.899 14 C -0.230 4.230 15 N -0.616 5.616 16 Si 0.760 3.240 17 H -0.219 1.219 18 H -0.218 1.218 19 H -0.199 1.199 20 C 0.011 3.989 21 H 0.165 0.835 22 N -0.065 5.065 23 C -0.187 4.187 24 C -0.218 4.218 25 N -0.176 5.176 26 N -0.095 5.095 27 C -0.011 4.011 28 N -0.236 5.236 29 C -0.135 4.135 30 C -0.145 4.145 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.199 0.801 39 H 0.069 0.931 40 H 0.226 0.774 41 H 0.235 0.765 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.046 0.954 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.259 -1.078 -21.225 21.254 hybrid contribution 0.597 -1.228 0.148 1.373 sum 0.338 -2.306 -21.077 21.205 Atomic orbital electron populations 1.21592 0.93307 1.01813 1.02639 1.21584 0.98268 0.92148 1.02954 1.22090 0.87180 0.98819 0.96162 0.87282 1.22127 0.91899 0.74896 0.81150 1.90627 1.69142 1.51305 1.33133 1.48693 1.06637 1.71200 1.07601 1.23270 0.98251 1.02110 0.80878 1.21923 0.90034 0.98721 0.84234 0.87254 1.42641 1.60259 1.22463 1.12591 1.19036 1.21613 1.02569 0.92807 0.89927 1.25129 1.00525 1.00555 0.96756 1.69790 1.44251 1.40494 1.07019 0.85829 0.77805 0.82541 0.77781 1.21861 1.21800 1.19885 1.23358 1.02493 0.76292 0.96807 0.83453 1.47493 1.27459 1.08967 1.22550 1.23958 1.04300 0.86237 1.04254 1.24188 0.99049 1.02121 0.96434 1.75054 1.20257 1.02056 1.20211 1.78335 1.14474 1.05976 1.10718 1.22155 0.82735 1.04999 0.91180 1.62549 1.56601 1.02814 1.01613 1.22533 0.98247 0.89380 1.03351 1.22741 1.00786 0.98919 0.92057 0.92826 0.91798 0.92012 0.90878 0.90827 0.88892 0.90974 0.80129 0.93124 0.77445 0.76482 0.87007 0.89684 0.95434 0.90221 0.91111 0.90586 0.90982 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.67 71.98 0.70 -1.40 16 2 C -0.11 -1.83 4.93 30.60 0.15 -1.68 16 3 C 0.07 1.32 1.75 44.17 0.08 1.39 16 4 H 0.11 2.06 6.88 -2.39 -0.02 2.04 16 5 C 0.51 11.00 6.18 87.65 0.54 11.54 16 6 O -0.56 -14.83 12.43 -3.04 -0.04 -14.87 16 7 N -0.61 -12.17 3.33 -811.81 -2.70 -14.87 16 8 C 0.08 1.89 5.49 86.85 0.48 2.37 16 9 C 0.16 4.69 3.58 46.38 0.17 4.85 16 10 H 0.11 3.05 8.09 -2.38 -0.02 3.03 16 11 N -0.74 -30.27 5.01 -316.37 -1.59 -31.85 16 12 C -0.23 -11.68 10.44 84.04 0.88 -10.80 16 13 H 0.08 4.40 8.06 -2.91 -0.02 4.38 16 14 C -0.04 -2.02 5.50 84.86 0.47 -1.56 16 15 N -0.97 -58.64 13.97 21.65 0.30 -58.34 16 16 Si 0.93 46.75 27.74 68.60 1.90 48.65 16 17 H -0.29 -15.16 7.11 99.48 0.71 -14.46 16 18 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 19 H -0.27 -13.20 6.52 99.48 0.65 -12.55 16 20 C 0.11 2.70 3.97 46.18 0.18 2.88 16 21 H 0.15 3.18 8.14 -2.38 -0.02 3.16 16 22 N -0.27 -7.75 2.23 -321.55 -0.72 -8.47 16 23 C -0.04 -0.89 9.23 83.49 0.77 -0.12 16 24 C -0.06 -1.63 12.05 83.73 1.01 -0.62 16 25 N -0.31 -11.14 12.41 -58.26 -0.72 -11.86 16 26 N -0.12 -4.21 12.58 37.02 0.47 -3.75 16 27 C 0.11 2.14 5.95 86.73 0.52 2.65 16 28 N -0.51 -9.77 4.50 -927.73 -4.18 -13.95 16 29 C 0.01 0.24 9.21 127.69 1.18 1.42 16 30 C 0.00 0.05 8.85 127.69 1.13 1.18 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.00 7.85 -2.39 -0.02 0.98 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.18 6.06 -2.39 -0.01 1.16 16 35 H 0.07 1.19 7.56 -2.39 -0.02 1.18 16 36 H 0.09 2.15 6.90 -2.39 -0.02 2.13 16 37 H 0.07 1.78 6.92 -2.39 -0.02 1.76 16 38 H 0.36 15.85 4.08 -92.71 -0.38 15.47 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.21 3.80 7.56 -2.91 -0.02 3.78 16 41 H 0.22 4.08 8.06 -2.91 -0.02 4.05 16 42 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.08 1.59 7.43 -2.39 -0.02 1.57 16 44 H 0.03 0.62 5.92 -2.39 -0.01 0.60 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.08 1.24 5.76 -2.39 -0.01 1.23 16 48 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.05 1.05 5.50 -2.39 -0.01 1.03 16 Total: -1.00 -70.49 379.66 1.50 -68.99 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.53 Total: 28.19 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 8.24 Total: 12.12 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -9.14 Total: -143.09 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.04 Total: -14.87 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Total: -70.49 1.50 -68.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070277171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.601 kcal (2) G-P(sol) polarization free energy of solvation -70.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds