Wall clock time and date at job start Tue Mar 31 2020 21:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.70331 * 2 1 4 4 C 1.53188 * 109.59149 * 239.63895 * 2 1 3 5 5 C 1.53035 * 109.31654 * 185.57833 * 4 2 1 6 6 C 1.53041 * 109.53565 * 61.36471 * 5 4 2 7 7 H 1.09001 * 109.50033 * 58.59071 * 6 5 4 8 8 N 1.46504 * 109.51930 * 178.66780 * 6 5 4 9 9 C 1.34780 * 119.99702 * 204.91747 * 8 6 5 10 10 O 1.21541 * 120.00384 * 0.02562 * 9 8 6 11 11 C 1.48011 * 119.99940 * 180.02562 * 9 8 6 12 12 N 1.34185 * 126.69704 * 0.02599 * 11 9 8 13 13 N 1.28981 * 107.25074 * 180.02562 * 12 11 9 14 14 N 1.28725 * 108.98803 * 359.97438 * 13 12 11 15 15 C 1.46497 * 125.32022 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.47191 * 0.02620 * 15 14 13 17 17 C 1.53001 * 109.47260 * 120.02617 * 15 14 13 18 18 C 1.53003 * 109.47163 * 240.02769 * 15 14 13 19 19 N 1.28864 * 109.35831 * 359.72904 * 14 13 12 20 20 C 1.53190 * 109.31317 * 298.63240 * 6 5 4 21 21 N 1.46929 * 108.77487 * 54.64068 * 20 6 5 22 22 C 1.36933 * 120.63260 * 126.36750 * 21 20 6 23 23 H 1.07997 * 120.00129 * 209.02075 * 22 21 20 24 24 C 1.38812 * 119.99748 * 29.02371 * 22 21 20 25 25 N 1.31614 * 120.00311 * 15.02619 * 24 22 21 26 26 Si 1.86810 * 119.99778 * 195.02850 * 24 22 21 27 27 H 1.48501 * 109.46671 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47133 * 119.99909 * 26 24 22 29 29 H 1.48502 * 109.46949 * 240.00175 * 26 24 22 30 30 H 1.09006 * 109.47347 * 299.65050 * 1 2 3 31 31 H 1.08999 * 109.47142 * 59.64933 * 1 2 3 32 32 H 1.08997 * 109.47108 * 179.64936 * 1 2 3 33 33 H 1.09008 * 109.49183 * 305.53048 * 4 2 1 34 34 H 1.09004 * 109.49557 * 65.58838 * 4 2 1 35 35 H 1.08993 * 109.46010 * 301.34402 * 5 4 2 36 36 H 1.09004 * 109.45934 * 181.38411 * 5 4 2 37 37 H 0.96993 * 120.00272 * 24.92044 * 8 6 5 38 38 H 1.08998 * 109.47165 * 59.99540 * 16 15 14 39 39 H 1.08997 * 109.47081 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.46911 * 299.99910 * 16 15 14 41 41 H 1.08994 * 109.47352 * 59.99784 * 17 15 14 42 42 H 1.08993 * 109.47124 * 180.02562 * 17 15 14 43 43 H 1.08999 * 109.46938 * 299.99722 * 17 15 14 44 44 H 1.08996 * 109.47386 * 59.99515 * 18 15 14 45 45 H 1.09006 * 109.47291 * 179.97438 * 18 15 14 46 46 H 1.08999 * 109.47112 * 299.99637 * 18 15 14 47 47 H 1.09007 * 109.58660 * 174.42506 * 20 6 5 48 48 H 1.08994 * 109.58933 * 294.70697 * 20 6 5 49 49 H 0.97008 * 119.99860 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8480 -1.1700 6 6 3.9568 -1.6657 0.0638 7 1 3.4983 -2.6528 0.0056 8 7 5.4141 -1.8059 0.1182 9 6 5.9669 -2.8480 0.7701 10 8 5.2565 -3.6716 1.3124 11 6 7.4392 -2.9894 0.8255 12 7 8.3452 -2.1646 0.2784 13 7 9.5117 -2.6409 0.5538 14 7 9.3719 -3.7183 1.2442 15 6 10.4679 -4.5495 1.7483 16 6 11.8062 -3.9387 1.3279 17 6 10.3956 -4.6178 3.2751 18 6 10.3465 -5.9602 1.1684 19 7 8.1173 -3.9481 1.4279 20 6 3.4650 -0.9468 1.3239 21 7 2.0224 -0.6994 1.1946 22 6 1.1535 -1.1133 2.1687 23 1 0.1359 -1.3678 1.9119 24 6 1.5808 -1.2055 3.4862 25 7 2.7037 -0.6272 3.8560 26 14 0.5618 -2.1507 4.7345 27 1 -0.6469 -2.7021 4.0709 28 1 1.3711 -3.2632 5.2936 29 1 0.1508 -1.2376 5.8311 30 1 -0.3634 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0276 -0.0063 33 1 1.6030 -1.7255 -1.2910 34 1 1.7655 -0.1673 -2.1368 35 1 4.0061 0.1472 -1.0992 36 1 3.9378 -1.3450 -2.0667 37 1 5.9811 -1.1489 -0.3149 38 1 11.8927 -2.9337 1.7410 39 1 12.6216 -4.5574 1.7026 40 1 11.8577 -3.8901 0.2402 41 1 9.4422 -5.0529 3.5747 42 1 11.2113 -5.2358 3.6502 43 1 10.4821 -3.6128 3.6882 44 1 10.3979 -5.9116 0.0808 45 1 11.1623 -6.5785 1.5432 46 1 9.3931 -6.3954 1.4680 47 1 3.6518 -1.5715 2.1975 48 1 3.9920 0.0010 1.4332 49 1 3.0020 -0.6914 4.7768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071519284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:59 Heat of formation + Delta-G solvation = 109.861738 kcal Electronic energy + Delta-G solvation = -30027.559129 eV Core-core repulsion = 26028.569292 eV Total energy + Delta-G solvation = -3998.989837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.44035 -39.47020 -37.95628 -37.49989 -34.52235 -33.52397 -32.82083 -32.51947 -30.62707 -29.80103 -28.08612 -28.01155 -26.42949 -25.29874 -24.59589 -24.30263 -22.24184 -21.09403 -20.85657 -20.11381 -19.30886 -17.82671 -17.43287 -16.83696 -16.40136 -15.63039 -15.18153 -14.78242 -14.67428 -14.23950 -14.12803 -13.94681 -13.75083 -13.59355 -13.37013 -13.31104 -12.96425 -12.84399 -12.73646 -12.37019 -12.31403 -12.28066 -11.96555 -11.86137 -11.58688 -11.44463 -11.09571 -11.07293 -11.03460 -10.85907 -10.69065 -10.53136 -10.36725 -10.35373 -10.21634 -10.01531 -9.89260 -9.54068 -9.43371 -8.59025 -8.38657 -6.57956 -5.69936 -3.14464 1.03680 1.54925 1.57919 3.04084 3.40834 3.45479 3.52989 3.54253 3.78387 4.05478 4.13395 4.18311 4.55014 4.61285 4.94008 4.95995 4.99603 5.12820 5.17495 5.19255 5.29073 5.37569 5.40765 5.45315 5.51948 5.58681 5.61294 5.64411 5.71666 5.77455 5.99116 6.03493 6.15017 6.30515 6.32427 6.42471 6.47479 6.50891 6.66589 6.74861 6.87640 7.07910 7.16409 7.33577 7.75763 7.78111 7.90819 8.19700 8.43967 8.54372 9.28292 9.92783 10.47757 11.38090 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.003035 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.645821 B = 9222.189246 C =10592.136124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.118 3.882 7 H 0.086 0.914 8 N -0.695 5.695 9 C 0.610 3.390 10 O -0.500 6.500 11 C 0.135 3.865 12 N -0.258 5.258 13 N -0.060 5.060 14 N -0.128 5.128 15 C 0.177 3.823 16 C -0.152 4.152 17 C -0.162 4.162 18 C -0.160 4.160 19 N -0.246 5.246 20 C 0.166 3.834 21 N -0.583 5.583 22 C -0.251 4.251 23 H 0.072 0.928 24 C 0.005 3.995 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.291 1.291 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.403 0.597 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.020 0.980 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.664 -6.371 -8.151 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.013 3.987 7 H 0.104 0.896 8 N -0.346 5.346 9 C 0.389 3.611 10 O -0.371 6.371 11 C -0.149 4.149 12 N -0.133 5.133 13 N -0.053 5.053 14 N -0.043 5.043 15 C 0.096 3.904 16 C -0.210 4.210 17 C -0.220 4.220 18 C -0.218 4.218 19 N -0.099 5.099 20 C 0.039 3.961 21 N -0.306 5.306 22 C -0.381 4.381 23 H 0.089 0.911 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.202 1.202 28 H -0.215 1.215 29 H -0.218 1.218 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.237 0.763 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.038 0.962 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.763 -6.840 -7.664 20.520 hybrid contribution -0.441 -0.215 0.652 0.816 sum 17.322 -7.056 -7.012 19.975 Atomic orbital electron populations 1.21800 0.95971 1.01386 1.00228 1.20505 0.93082 0.93631 0.87026 0.95629 1.22050 0.94135 1.01385 0.98970 1.21684 0.97468 0.99820 0.96509 1.22159 0.76359 1.01343 0.98848 0.89579 1.45814 1.09120 1.25629 1.54050 1.16114 0.81737 0.82964 0.80325 1.90894 1.60121 1.41995 1.44044 1.25577 0.98410 0.91236 0.99671 1.76110 0.94277 1.23241 1.19696 1.78825 1.18950 0.98414 1.09131 1.50714 1.05179 1.16610 1.31815 1.21482 0.82621 0.90075 0.96184 1.22099 0.92820 1.02464 1.03647 1.22268 1.04980 1.04167 0.90583 1.22257 1.04920 0.92706 1.01963 1.75016 0.90716 1.24044 1.20133 1.21113 0.83673 0.97151 0.94178 1.44024 1.02544 1.64722 1.19327 1.19187 0.94693 1.38118 0.86101 0.91080 1.25080 0.97715 0.99492 0.97049 1.70005 1.23304 1.44400 1.16730 0.86266 0.79664 0.79635 0.81470 1.20201 1.21520 1.21844 0.91988 0.94338 0.92789 0.92003 0.92540 0.91971 0.92831 0.76269 0.90472 0.89177 0.90552 0.90068 0.89043 0.91204 0.91345 0.89037 0.90138 0.88579 0.96204 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.94 37.16 0.30 -2.26 16 2 C 0.16 3.36 3.50 -67.60 -0.24 3.13 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.13 5.37 -26.62 -0.14 -2.28 16 5 C -0.12 -1.91 5.36 -26.69 -0.14 -2.05 16 6 C 0.12 2.33 2.60 -67.81 -0.18 2.15 16 7 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 8 N -0.69 -12.37 5.08 -54.58 -0.28 -12.65 16 9 C 0.61 12.00 7.80 -12.25 -0.10 11.91 16 10 O -0.50 -11.75 16.76 5.33 0.09 -11.66 16 11 C 0.14 2.37 8.14 -156.24 -1.27 1.10 16 12 N -0.26 -4.12 12.26 32.10 0.39 -3.73 16 13 N -0.06 -0.85 12.21 60.35 0.74 -0.11 16 14 N -0.13 -1.66 3.72 0.52 0.00 -1.65 16 15 C 0.18 1.44 1.30 -131.82 -0.17 1.27 16 16 C -0.15 -0.87 7.90 37.16 0.29 -0.57 16 17 C -0.16 -1.17 8.65 37.16 0.32 -0.84 16 18 C -0.16 -1.05 8.67 37.16 0.32 -0.73 16 19 N -0.25 -3.99 11.85 32.11 0.38 -3.61 16 20 C 0.17 4.07 4.86 -3.71 -0.02 4.05 16 21 N -0.58 -14.57 2.99 -164.78 -0.49 -15.06 16 22 C -0.25 -6.91 8.60 -15.06 -0.13 -7.04 16 23 H 0.07 1.90 6.21 -52.49 -0.33 1.57 16 24 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 25 N -0.90 -26.97 11.14 55.49 0.62 -26.35 16 26 Si 0.90 22.58 29.58 -169.99 -5.03 17.55 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 6.11 8.35 -40.82 -0.34 5.77 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.10 2.78 6.06 -51.92 -0.31 2.46 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -34.09 394.40 -6.93 -41.01 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.06 Total: 2.43 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -1.24 Total: 7.89 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 1.36 Total: -63.17 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.09 -6.93 -41.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071519284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.877 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds