Wall clock time and date at job start Tue Mar 31 2020 21:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.70331 * 2 1 4 4 C 1.53188 * 109.59149 * 239.63895 * 2 1 3 5 5 C 1.53035 * 109.31654 * 185.57833 * 4 2 1 6 6 C 1.53041 * 109.53565 * 61.36471 * 5 4 2 7 7 H 1.09001 * 109.50033 * 58.59071 * 6 5 4 8 8 N 1.46504 * 109.51930 * 178.66780 * 6 5 4 9 9 C 1.34780 * 119.99702 * 204.91747 * 8 6 5 10 10 O 1.21541 * 120.00384 * 0.02562 * 9 8 6 11 11 C 1.48011 * 119.99940 * 180.02562 * 9 8 6 12 12 N 1.34185 * 126.69704 * 0.02599 * 11 9 8 13 13 N 1.28981 * 107.25074 * 180.02562 * 12 11 9 14 14 N 1.28725 * 108.98803 * 359.97438 * 13 12 11 15 15 C 1.46497 * 125.32022 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.47191 * 0.02620 * 15 14 13 17 17 C 1.53001 * 109.47260 * 120.02617 * 15 14 13 18 18 C 1.53003 * 109.47163 * 240.02769 * 15 14 13 19 19 N 1.28864 * 109.35831 * 359.72904 * 14 13 12 20 20 C 1.53190 * 109.31317 * 298.63240 * 6 5 4 21 21 N 1.46929 * 108.77487 * 54.64068 * 20 6 5 22 22 C 1.36933 * 120.63260 * 126.36750 * 21 20 6 23 23 H 1.07997 * 120.00129 * 209.02075 * 22 21 20 24 24 C 1.38812 * 119.99748 * 29.02371 * 22 21 20 25 25 N 1.31614 * 120.00311 * 15.02619 * 24 22 21 26 26 Si 1.86810 * 119.99778 * 195.02850 * 24 22 21 27 27 H 1.48501 * 109.46671 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47133 * 119.99909 * 26 24 22 29 29 H 1.48502 * 109.46949 * 240.00175 * 26 24 22 30 30 H 1.09006 * 109.47347 * 299.65050 * 1 2 3 31 31 H 1.08999 * 109.47142 * 59.64933 * 1 2 3 32 32 H 1.08997 * 109.47108 * 179.64936 * 1 2 3 33 33 H 1.09008 * 109.49183 * 305.53048 * 4 2 1 34 34 H 1.09004 * 109.49557 * 65.58838 * 4 2 1 35 35 H 1.08993 * 109.46010 * 301.34402 * 5 4 2 36 36 H 1.09004 * 109.45934 * 181.38411 * 5 4 2 37 37 H 0.96993 * 120.00272 * 24.92044 * 8 6 5 38 38 H 1.08998 * 109.47165 * 59.99540 * 16 15 14 39 39 H 1.08997 * 109.47081 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.46911 * 299.99910 * 16 15 14 41 41 H 1.08994 * 109.47352 * 59.99784 * 17 15 14 42 42 H 1.08993 * 109.47124 * 180.02562 * 17 15 14 43 43 H 1.08999 * 109.46938 * 299.99722 * 17 15 14 44 44 H 1.08996 * 109.47386 * 59.99515 * 18 15 14 45 45 H 1.09006 * 109.47291 * 179.97438 * 18 15 14 46 46 H 1.08999 * 109.47112 * 299.99637 * 18 15 14 47 47 H 1.09007 * 109.58660 * 174.42506 * 20 6 5 48 48 H 1.08994 * 109.58933 * 294.70697 * 20 6 5 49 49 H 0.97008 * 119.99860 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8480 -1.1700 6 6 3.9568 -1.6657 0.0638 7 1 3.4983 -2.6528 0.0056 8 7 5.4141 -1.8059 0.1182 9 6 5.9669 -2.8480 0.7701 10 8 5.2565 -3.6716 1.3124 11 6 7.4392 -2.9894 0.8255 12 7 8.3452 -2.1646 0.2784 13 7 9.5117 -2.6409 0.5538 14 7 9.3719 -3.7183 1.2442 15 6 10.4679 -4.5495 1.7483 16 6 11.8062 -3.9387 1.3279 17 6 10.3956 -4.6178 3.2751 18 6 10.3465 -5.9602 1.1684 19 7 8.1173 -3.9481 1.4279 20 6 3.4650 -0.9468 1.3239 21 7 2.0224 -0.6994 1.1946 22 6 1.1535 -1.1133 2.1687 23 1 0.1359 -1.3678 1.9119 24 6 1.5808 -1.2055 3.4862 25 7 2.7037 -0.6272 3.8560 26 14 0.5618 -2.1507 4.7345 27 1 -0.6469 -2.7021 4.0709 28 1 1.3711 -3.2632 5.2936 29 1 0.1508 -1.2376 5.8311 30 1 -0.3634 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0276 -0.0063 33 1 1.6030 -1.7255 -1.2910 34 1 1.7655 -0.1673 -2.1368 35 1 4.0061 0.1472 -1.0992 36 1 3.9378 -1.3450 -2.0667 37 1 5.9811 -1.1489 -0.3149 38 1 11.8927 -2.9337 1.7410 39 1 12.6216 -4.5574 1.7026 40 1 11.8577 -3.8901 0.2402 41 1 9.4422 -5.0529 3.5747 42 1 11.2113 -5.2358 3.6502 43 1 10.4821 -3.6128 3.6882 44 1 10.3979 -5.9116 0.0808 45 1 11.1623 -6.5785 1.5432 46 1 9.3931 -6.3954 1.4680 47 1 3.6518 -1.5715 2.1975 48 1 3.9920 0.0010 1.4332 49 1 3.0020 -0.6914 4.7768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071519284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:58 Heat of formation + Delta-G solvation = 85.409052 kcal Electronic energy + Delta-G solvation = -30028.619477 eV Core-core repulsion = 26028.569292 eV Total energy + Delta-G solvation = -4000.050185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.62712 -41.07220 -39.29809 -38.61861 -36.19493 -34.77377 -34.61936 -33.73369 -32.17082 -31.70643 -28.67844 -28.56327 -27.95277 -27.13794 -25.84359 -25.60370 -24.00289 -22.55180 -22.02472 -21.56306 -20.98961 -19.11657 -18.59210 -18.33035 -17.77659 -17.37979 -16.94353 -16.11342 -15.86989 -15.57119 -15.30319 -15.26917 -15.17588 -15.09657 -14.95962 -14.48788 -14.17121 -14.05419 -13.53437 -13.49902 -13.31553 -13.24031 -13.09324 -12.86952 -12.78459 -12.70980 -12.66033 -12.55712 -12.38839 -12.27078 -12.14533 -12.13664 -12.11933 -11.98888 -11.74252 -11.54253 -11.49322 -11.27484 -11.13353 -10.54545 -10.25635 -8.62565 -7.84517 -5.30501 -0.18543 0.23095 0.62449 1.41021 1.45430 1.53543 1.65633 1.90069 2.50423 2.76479 2.93209 3.32674 3.46340 3.54115 3.61598 3.71341 3.89947 3.99067 4.10302 4.24270 4.29177 4.38630 4.39542 4.50132 4.56215 4.58267 4.59997 4.71234 4.71607 4.72822 4.80368 4.90206 5.00210 5.03039 5.08785 5.09434 5.15783 5.16288 5.21156 5.24177 5.32226 5.36881 5.57228 5.62903 5.71853 5.78293 6.24976 6.43621 6.89152 7.01873 7.16795 7.90381 8.39721 9.20911 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.003035 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.645821 B = 9222.189246 C =10592.136124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.023 0.977 4 C -0.116 4.116 5 C -0.109 4.109 6 C 0.131 3.869 7 H 0.063 0.937 8 N -0.680 5.680 9 C 0.610 3.390 10 O -0.548 6.548 11 C 0.117 3.883 12 N -0.263 5.263 13 N -0.054 5.054 14 N -0.109 5.109 15 C 0.158 3.842 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.157 4.157 19 N -0.261 5.261 20 C 0.177 3.823 21 N -0.602 5.602 22 C -0.246 4.246 23 H 0.078 0.922 24 C -0.056 4.056 25 N -0.935 5.935 26 Si 0.956 3.044 27 H -0.260 1.260 28 H -0.302 1.302 29 H -0.289 1.289 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.418 0.582 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.132 0.868 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.131 0.869 46 H 0.059 0.941 47 H 0.045 0.955 48 H 0.000 1.000 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.054 -6.779 -10.380 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.041 0.959 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.026 3.974 7 H 0.081 0.919 8 N -0.332 5.332 9 C 0.391 3.609 10 O -0.422 6.422 11 C -0.166 4.166 12 N -0.138 5.138 13 N -0.047 5.047 14 N -0.026 5.026 15 C 0.080 3.920 16 C -0.206 4.206 17 C -0.218 4.218 18 C -0.215 4.215 19 N -0.115 5.115 20 C 0.050 3.950 21 N -0.326 5.326 22 C -0.377 4.377 23 H 0.096 0.904 24 C -0.250 4.250 25 N -0.582 5.582 26 Si 0.785 3.215 27 H -0.184 1.184 28 H -0.229 1.229 29 H -0.216 1.216 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.147 0.853 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.151 0.849 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.150 0.850 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.018 0.982 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.161 -7.211 -9.955 22.765 hybrid contribution -0.746 -0.105 1.339 1.536 sum 18.415 -7.316 -8.616 21.608 Atomic orbital electron populations 1.21734 0.94617 1.01235 1.01093 1.20841 0.94387 0.93457 0.86648 0.95936 1.21956 0.94090 1.01135 0.98399 1.21679 0.97414 1.00037 0.95532 1.21774 0.77091 1.00082 0.98444 0.91854 1.45644 1.08646 1.25503 1.53416 1.16380 0.82639 0.82550 0.79363 1.90860 1.61602 1.43753 1.46010 1.25078 0.97524 0.92546 1.01490 1.76068 0.94392 1.23324 1.19986 1.78744 1.18032 0.98739 1.09158 1.51340 1.05031 1.16142 1.30119 1.22261 0.82293 0.90624 0.96869 1.22179 0.92123 1.02684 1.03592 1.22326 1.05411 1.04232 0.89842 1.22308 1.05436 0.91872 1.01862 1.74975 0.92165 1.24095 1.20255 1.20774 0.84039 0.95480 0.94713 1.44316 1.02315 1.65610 1.20333 1.19539 0.95176 1.36339 0.86625 0.90436 1.25808 0.99015 1.01163 0.99050 1.70172 1.25160 1.46541 1.16352 0.85359 0.78674 0.77986 0.79482 1.18428 1.22931 1.21640 0.94330 0.90226 0.93419 0.92556 0.88329 0.90694 0.89330 0.74450 0.91264 0.85276 0.90784 0.92335 0.84932 0.92187 0.91573 0.85049 0.92196 0.93670 0.98248 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.94 71.98 0.57 -4.05 16 2 C 0.15 6.03 3.50 44.97 0.16 6.18 16 3 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -3.60 5.37 30.67 0.16 -3.43 16 5 C -0.11 -3.28 5.36 30.62 0.16 -3.11 16 6 C 0.13 5.27 2.60 45.07 0.12 5.38 16 7 H 0.06 2.86 7.58 -2.39 -0.02 2.84 16 8 N -0.68 -24.67 5.08 -444.86 -2.26 -26.92 16 9 C 0.61 25.09 7.80 86.83 0.68 25.77 16 10 O -0.55 -27.37 16.76 -3.84 -0.06 -27.43 16 11 C 0.12 4.22 8.14 137.15 1.12 5.34 16 12 N -0.26 -8.40 12.26 -52.36 -0.64 -9.04 16 13 N -0.05 -1.50 12.21 37.02 0.45 -1.05 16 14 N -0.11 -2.78 3.72 -152.25 -0.57 -3.35 16 15 C 0.16 2.30 1.30 3.61 0.00 2.30 16 16 C -0.15 -1.27 7.90 71.98 0.57 -0.70 16 17 C -0.16 -2.08 8.65 71.98 0.62 -1.46 16 18 C -0.16 -1.74 8.67 71.98 0.62 -1.12 16 19 N -0.26 -8.68 11.85 -52.31 -0.62 -9.30 16 20 C 0.18 9.07 4.86 86.36 0.42 9.49 16 21 N -0.60 -30.68 2.99 -675.24 -2.02 -32.70 16 22 C -0.25 -13.87 8.60 84.03 0.72 -13.15 16 23 H 0.08 4.18 6.21 -2.91 -0.02 4.16 16 24 C -0.06 -3.29 4.96 84.86 0.42 -2.87 16 25 N -0.94 -59.07 11.14 21.65 0.24 -58.83 16 26 Si 0.96 48.07 29.58 68.60 2.03 50.10 16 27 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 29 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 30 H 0.04 1.53 7.62 -2.38 -0.02 1.51 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.74 7.44 -2.39 -0.02 1.72 16 33 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.42 12.52 8.35 -92.71 -0.77 11.75 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.13 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.04 2.78 6.06 -2.38 -0.01 2.76 16 48 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 49 H 0.24 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -80.60 394.40 3.08 -77.52 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.18 Total: 16.43 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 6.35 Total: 24.58 kcal Atomic # 7 Polarization: -135.78 SS G_CDS: -5.41 Total: -141.20 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -80.60 3.08 -77.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071519284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.929 kcal (2) G-P(sol) polarization free energy of solvation -80.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds