Wall clock time and date at job start Tue Mar 31 2020 21:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.59043 * 239.56567 * 2 1 3 5 5 C 1.53041 * 109.33174 * 185.56843 * 4 2 1 6 6 C 1.53041 * 109.52064 * 61.37251 * 5 4 2 7 7 H 1.09004 * 109.49245 * 178.66064 * 6 5 4 8 8 N 1.46496 * 109.49787 * 58.59740 * 6 5 4 9 9 C 1.34775 * 120.00185 * 154.99455 * 8 6 5 10 10 O 1.21541 * 120.00166 * 0.02562 * 9 8 6 11 11 C 1.48004 * 120.00162 * 180.02562 * 9 8 6 12 12 N 1.34184 * 126.70060 * 0.02562 * 11 9 8 13 13 N 1.28984 * 107.25478 * 179.97438 * 12 11 9 14 14 N 1.28715 * 108.98578 * 0.02562 * 13 12 11 15 15 C 1.46505 * 125.31865 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46844 * 0.02562 * 15 14 13 17 17 C 1.53000 * 109.46907 * 120.02257 * 15 14 13 18 18 C 1.53000 * 109.47451 * 240.02537 * 15 14 13 19 19 N 1.28869 * 109.36010 * 359.72727 * 14 13 12 20 20 C 1.53191 * 109.31761 * 298.64109 * 6 5 4 21 21 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 22 22 C 1.36943 * 120.63047 * 353.37615 * 21 2 1 23 23 H 1.07994 * 119.99694 * 29.03344 * 22 21 2 24 24 C 1.38804 * 119.99860 * 209.04061 * 22 21 2 25 25 N 1.31617 * 120.00554 * 15.00542 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.01258 * 24 22 21 27 27 H 1.48496 * 109.47404 * 89.99845 * 26 24 22 28 28 H 1.48509 * 109.46800 * 209.99626 * 26 24 22 29 29 H 1.48502 * 109.47190 * 329.99526 * 26 24 22 30 30 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 31 31 H 1.09005 * 109.47173 * 59.71579 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 33 33 H 1.09003 * 109.47698 * 65.62364 * 4 2 1 34 34 H 1.08998 * 109.50641 * 305.54009 * 4 2 1 35 35 H 1.09006 * 109.46056 * 301.36483 * 5 4 2 36 36 H 1.08993 * 109.46309 * 181.38908 * 5 4 2 37 37 H 0.96999 * 119.99997 * 334.99818 * 8 6 5 38 38 H 1.09005 * 109.47437 * 60.00010 * 16 15 14 39 39 H 1.09007 * 109.46902 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47341 * 299.99640 * 16 15 14 41 41 H 1.09003 * 109.46959 * 60.00238 * 17 15 14 42 42 H 1.08998 * 109.47034 * 179.97438 * 17 15 14 43 43 H 1.08991 * 109.47378 * 300.00506 * 17 15 14 44 44 H 1.09003 * 109.47110 * 59.99579 * 18 15 14 45 45 H 1.08993 * 109.47277 * 179.97438 * 18 15 14 46 46 H 1.09003 * 109.47005 * 300.00123 * 18 15 14 47 47 H 1.08993 * 109.58865 * 174.42189 * 20 6 5 48 48 H 1.08998 * 109.58512 * 294.85100 * 20 6 5 49 49 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2441 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 5.0411 -1.7699 0.1055 8 7 3.3405 -2.9924 -0.0112 9 6 3.8970 -4.0327 0.6404 10 8 4.9100 -3.8700 1.2920 11 6 3.2746 -5.3732 0.5625 12 7 2.1635 -5.7034 -0.1134 13 7 1.9612 -6.9633 0.0750 14 7 2.8914 -7.4278 0.8338 15 6 3.0077 -8.8198 1.2758 16 6 1.8522 -9.6374 0.6953 17 6 4.3375 -9.3997 0.7898 18 6 2.9549 -8.8759 2.8039 19 7 3.7072 -6.4783 1.1398 20 6 3.4651 -0.9454 1.3249 21 7 2.0226 -0.6981 1.1953 22 6 1.1537 -1.1101 2.1703 23 1 0.1360 -1.3649 1.9142 24 6 1.5812 -1.2000 3.4879 25 7 2.7045 -0.6215 3.8564 26 14 0.5621 -2.1425 4.7380 27 1 0.9960 -3.5624 4.7610 28 1 0.7531 -1.5446 6.0840 29 1 -0.8729 -2.0694 4.3631 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7658 -0.1694 -2.1361 34 1 1.6029 -1.7269 -1.2890 35 1 4.0061 0.1460 -1.0995 36 1 3.9376 -1.3474 -2.0653 37 1 2.5319 -3.1222 -0.5309 38 1 1.8897 -9.5975 -0.3934 39 1 1.9390 -10.6732 1.0238 40 1 0.9048 -9.2243 1.0415 41 1 5.1607 -8.8171 1.2034 42 1 4.4243 -10.4352 1.1190 43 1 4.3751 -9.3597 -0.2987 44 1 2.0075 -8.4626 3.1501 45 1 3.0410 -9.9114 3.1327 46 1 3.7782 -8.2933 3.2175 47 1 3.6518 -1.5691 2.1990 48 1 3.9903 0.0037 1.4316 49 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071519302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:04 Heat of formation + Delta-G solvation = 111.809483 kcal Electronic energy + Delta-G solvation = -30961.103450 eV Core-core repulsion = 26962.198074 eV Total energy + Delta-G solvation = -3998.905376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.28920 -39.46570 -37.88805 -37.42114 -34.21114 -33.38436 -32.72390 -32.40133 -30.58727 -29.83163 -27.99446 -27.92742 -26.39915 -25.25439 -24.61534 -24.33946 -22.13624 -21.11166 -20.75776 -20.30871 -18.69442 -17.92849 -17.28962 -16.78803 -16.30299 -15.37265 -15.11412 -14.71331 -14.57915 -14.25573 -14.06657 -13.86783 -13.82847 -13.50417 -13.25843 -13.14957 -12.89367 -12.77338 -12.75340 -12.46354 -12.23207 -12.15540 -11.93241 -11.83444 -11.48406 -11.21927 -11.11628 -10.94523 -10.93193 -10.88157 -10.82601 -10.69772 -10.33400 -10.29066 -10.20683 -9.92207 -9.81652 -9.47420 -9.41278 -8.42946 -8.40837 -6.56110 -5.70349 -3.13907 1.17810 1.70995 1.71839 3.20961 3.40712 3.47553 3.48305 3.59626 3.89904 4.14504 4.24332 4.34840 4.54200 4.73746 5.02636 5.03523 5.08588 5.20387 5.26190 5.27852 5.35089 5.39370 5.42783 5.50014 5.55443 5.56583 5.64631 5.68079 5.73847 5.88460 6.05137 6.15651 6.16395 6.19054 6.37655 6.40402 6.48469 6.54168 6.66670 6.68799 6.88714 7.09593 7.17182 7.38165 7.71230 7.88691 7.95261 8.35395 8.53668 8.61420 9.28483 9.92796 10.48301 11.37699 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.004123 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.585525 B = 6790.238582 C = 7815.307655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.026 0.974 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.080 0.920 8 N -0.674 5.674 9 C 0.613 3.387 10 O -0.516 6.516 11 C 0.139 3.861 12 N -0.255 5.255 13 N -0.062 5.062 14 N -0.130 5.130 15 C 0.178 3.822 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.162 4.162 19 N -0.250 5.250 20 C 0.160 3.840 21 N -0.583 5.583 22 C -0.247 4.247 23 H 0.069 0.931 24 C 0.006 3.994 25 N -0.900 5.900 26 Si 0.894 3.106 27 H -0.292 1.292 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.405 0.595 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.030 0.970 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 -15.665 -9.431 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.098 0.902 8 N -0.325 5.325 9 C 0.392 3.608 10 O -0.389 6.389 11 C -0.145 4.145 12 N -0.129 5.129 13 N -0.055 5.055 14 N -0.045 5.045 15 C 0.097 3.903 16 C -0.210 4.210 17 C -0.217 4.217 18 C -0.220 4.220 19 N -0.103 5.103 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.376 4.376 23 H 0.086 0.914 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.724 3.276 27 H -0.219 1.219 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.242 0.758 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.047 0.953 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.389 -15.944 -8.943 18.333 hybrid contribution -0.620 -0.256 0.748 1.005 sum 0.769 -16.200 -8.195 18.171 Atomic orbital electron populations 1.21803 0.96109 1.01312 1.00157 1.20458 0.92942 0.93603 0.87070 0.95670 1.22084 0.95059 1.00946 0.99124 1.21694 0.97193 1.00136 0.96581 1.21950 0.97078 0.80822 0.98851 0.90163 1.45596 1.29315 1.07848 1.49760 1.16047 0.83661 0.80410 0.80720 1.90822 1.24252 1.83254 1.40547 1.25540 0.93955 0.96466 0.98530 1.76126 1.14131 1.03063 1.19618 1.78820 1.12850 1.04688 1.09095 1.50671 1.13604 1.10859 1.29349 1.21444 0.99602 0.72277 0.96990 1.22095 0.96674 0.99612 1.02638 1.22243 0.94687 1.02308 1.02501 1.22270 1.04592 1.04377 0.90796 1.74981 1.18089 0.96261 1.20928 1.21222 0.83897 0.97219 0.94308 1.44053 1.02662 1.64900 1.19022 1.19106 0.94669 1.37746 0.86101 0.91370 1.25018 0.97693 0.99664 0.96913 1.69967 1.23155 1.44410 1.16861 0.86417 0.79912 0.79892 0.81341 1.21904 1.21720 1.20459 0.92078 0.94405 0.92874 0.92703 0.92410 0.90790 0.92810 0.75809 0.90566 0.89259 0.90457 0.90189 0.89137 0.91374 0.91190 0.89112 0.90128 0.88384 0.95257 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.94 37.16 0.30 -2.23 16 2 C 0.17 3.30 3.50 -67.62 -0.24 3.06 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.16 5.20 -26.63 -0.14 -2.30 16 5 C -0.12 -1.87 5.59 -26.69 -0.15 -2.02 16 6 C 0.12 2.28 2.81 -67.81 -0.19 2.09 16 7 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 8 N -0.67 -13.02 4.91 -54.58 -0.27 -13.29 16 9 C 0.61 12.88 7.80 -12.26 -0.10 12.79 16 10 O -0.52 -12.25 16.76 5.33 0.09 -12.16 16 11 C 0.14 2.70 8.14 -156.25 -1.27 1.43 16 12 N -0.25 -4.62 12.26 32.10 0.39 -4.22 16 13 N -0.06 -0.98 12.21 60.35 0.74 -0.25 16 14 N -0.13 -1.89 3.72 0.53 0.00 -1.89 16 15 C 0.18 1.68 1.30 -131.82 -0.17 1.51 16 16 C -0.15 -1.06 7.90 37.16 0.29 -0.77 16 17 C -0.16 -1.19 8.66 37.16 0.32 -0.87 16 18 C -0.16 -1.41 8.67 37.16 0.32 -1.09 16 19 N -0.25 -4.44 11.85 32.11 0.38 -4.06 16 20 C 0.16 3.84 4.89 -3.71 -0.02 3.82 16 21 N -0.58 -14.04 2.91 -164.80 -0.48 -14.52 16 22 C -0.25 -6.63 8.60 -15.06 -0.13 -6.76 16 23 H 0.07 1.81 6.21 -52.49 -0.33 1.49 16 24 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 25 N -0.90 -26.68 11.14 55.49 0.62 -26.07 16 26 Si 0.89 22.69 29.58 -169.99 -5.03 17.66 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.00 7.45 -51.93 -0.39 0.62 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.96 6.40 -51.93 -0.33 0.62 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.41 7.38 6.52 -40.82 -0.27 7.11 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 2.78 6.06 -51.93 -0.31 2.46 16 48 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -33.43 390.88 -6.81 -40.24 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.89 Total: 3.93 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -1.25 Total: 8.74 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 1.38 Total: -64.29 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.43 -6.81 -40.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071519302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.050 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds