Wall clock time and date at job start Tue Mar 31 2020 21:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.59043 * 239.56567 * 2 1 3 5 5 C 1.53041 * 109.33174 * 185.56843 * 4 2 1 6 6 C 1.53041 * 109.52064 * 61.37251 * 5 4 2 7 7 H 1.09004 * 109.49245 * 178.66064 * 6 5 4 8 8 N 1.46496 * 109.49787 * 58.59740 * 6 5 4 9 9 C 1.34775 * 120.00185 * 154.99455 * 8 6 5 10 10 O 1.21541 * 120.00166 * 0.02562 * 9 8 6 11 11 C 1.48004 * 120.00162 * 180.02562 * 9 8 6 12 12 N 1.34184 * 126.70060 * 0.02562 * 11 9 8 13 13 N 1.28984 * 107.25478 * 179.97438 * 12 11 9 14 14 N 1.28715 * 108.98578 * 0.02562 * 13 12 11 15 15 C 1.46505 * 125.31865 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46844 * 0.02562 * 15 14 13 17 17 C 1.53000 * 109.46907 * 120.02257 * 15 14 13 18 18 C 1.53000 * 109.47451 * 240.02537 * 15 14 13 19 19 N 1.28869 * 109.36010 * 359.72727 * 14 13 12 20 20 C 1.53191 * 109.31761 * 298.64109 * 6 5 4 21 21 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 22 22 C 1.36943 * 120.63047 * 353.37615 * 21 2 1 23 23 H 1.07994 * 119.99694 * 29.03344 * 22 21 2 24 24 C 1.38804 * 119.99860 * 209.04061 * 22 21 2 25 25 N 1.31617 * 120.00554 * 15.00542 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.01258 * 24 22 21 27 27 H 1.48496 * 109.47404 * 89.99845 * 26 24 22 28 28 H 1.48509 * 109.46800 * 209.99626 * 26 24 22 29 29 H 1.48502 * 109.47190 * 329.99526 * 26 24 22 30 30 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 31 31 H 1.09005 * 109.47173 * 59.71579 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 33 33 H 1.09003 * 109.47698 * 65.62364 * 4 2 1 34 34 H 1.08998 * 109.50641 * 305.54009 * 4 2 1 35 35 H 1.09006 * 109.46056 * 301.36483 * 5 4 2 36 36 H 1.08993 * 109.46309 * 181.38908 * 5 4 2 37 37 H 0.96999 * 119.99997 * 334.99818 * 8 6 5 38 38 H 1.09005 * 109.47437 * 60.00010 * 16 15 14 39 39 H 1.09007 * 109.46902 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47341 * 299.99640 * 16 15 14 41 41 H 1.09003 * 109.46959 * 60.00238 * 17 15 14 42 42 H 1.08998 * 109.47034 * 179.97438 * 17 15 14 43 43 H 1.08991 * 109.47378 * 300.00506 * 17 15 14 44 44 H 1.09003 * 109.47110 * 59.99579 * 18 15 14 45 45 H 1.08993 * 109.47277 * 179.97438 * 18 15 14 46 46 H 1.09003 * 109.47005 * 300.00123 * 18 15 14 47 47 H 1.08993 * 109.58865 * 174.42189 * 20 6 5 48 48 H 1.08998 * 109.58512 * 294.85100 * 20 6 5 49 49 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2441 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 5.0411 -1.7699 0.1055 8 7 3.3405 -2.9924 -0.0112 9 6 3.8970 -4.0327 0.6404 10 8 4.9100 -3.8700 1.2920 11 6 3.2746 -5.3732 0.5625 12 7 2.1635 -5.7034 -0.1134 13 7 1.9612 -6.9633 0.0750 14 7 2.8914 -7.4278 0.8338 15 6 3.0077 -8.8198 1.2758 16 6 1.8522 -9.6374 0.6953 17 6 4.3375 -9.3997 0.7898 18 6 2.9549 -8.8759 2.8039 19 7 3.7072 -6.4783 1.1398 20 6 3.4651 -0.9454 1.3249 21 7 2.0226 -0.6981 1.1953 22 6 1.1537 -1.1101 2.1703 23 1 0.1360 -1.3649 1.9142 24 6 1.5812 -1.2000 3.4879 25 7 2.7045 -0.6215 3.8564 26 14 0.5621 -2.1425 4.7380 27 1 0.9960 -3.5624 4.7610 28 1 0.7531 -1.5446 6.0840 29 1 -0.8729 -2.0694 4.3631 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7658 -0.1694 -2.1361 34 1 1.6029 -1.7269 -1.2890 35 1 4.0061 0.1460 -1.0995 36 1 3.9376 -1.3474 -2.0653 37 1 2.5319 -3.1222 -0.5309 38 1 1.8897 -9.5975 -0.3934 39 1 1.9390 -10.6732 1.0238 40 1 0.9048 -9.2243 1.0415 41 1 5.1607 -8.8171 1.2034 42 1 4.4243 -10.4352 1.1190 43 1 4.3751 -9.3597 -0.2987 44 1 2.0075 -8.4626 3.1501 45 1 3.0410 -9.9114 3.1327 46 1 3.7782 -8.2933 3.2175 47 1 3.6518 -1.5691 2.1990 48 1 3.9903 0.0037 1.4316 49 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071519302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:02 Heat of formation + Delta-G solvation = 88.367870 kcal Electronic energy + Delta-G solvation = -30962.119955 eV Core-core repulsion = 26962.198074 eV Total energy + Delta-G solvation = -3999.921881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -45.59382 -41.09874 -39.24936 -38.60380 -35.93049 -34.73343 -34.50349 -33.71045 -32.11957 -31.71451 -28.66692 -28.57150 -27.97834 -27.04770 -26.06448 -25.60052 -23.88716 -22.59614 -22.07629 -21.70961 -20.39578 -19.27736 -18.55115 -18.24561 -17.79544 -17.15850 -16.82783 -16.12012 -15.91608 -15.61503 -15.30396 -15.24947 -15.18799 -15.06982 -14.74325 -14.45826 -14.13869 -13.98290 -13.69887 -13.50152 -13.29940 -13.24687 -13.04713 -12.88696 -12.88182 -12.66987 -12.65752 -12.57144 -12.41023 -12.36431 -12.14156 -12.13862 -12.10565 -12.07607 -11.56559 -11.51391 -11.46408 -11.19592 -11.05265 -10.54753 -10.11557 -8.57488 -7.83165 -5.27034 -0.15236 0.27678 0.66150 1.34154 1.37087 1.43970 1.73893 2.01646 2.46971 2.83732 2.99121 3.32157 3.45684 3.55357 3.62958 3.64280 3.96496 4.04576 4.11569 4.21000 4.29490 4.39063 4.48793 4.48913 4.55913 4.58706 4.64880 4.69787 4.70535 4.75704 4.81808 4.97274 4.98509 5.03243 5.06813 5.07668 5.14304 5.16948 5.20099 5.28262 5.34463 5.53336 5.58640 5.65203 5.73354 5.75214 6.35206 6.44284 6.95158 7.06801 7.18709 7.93357 8.42673 9.21800 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.004123 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.585525 B = 6790.238582 C = 7815.307655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.155 3.845 3 H 0.021 0.979 4 C -0.123 4.123 5 C -0.109 4.109 6 C 0.125 3.875 7 H 0.079 0.921 8 N -0.663 5.663 9 C 0.609 3.391 10 O -0.554 6.554 11 C 0.118 3.882 12 N -0.266 5.266 13 N -0.057 5.057 14 N -0.111 5.111 15 C 0.157 3.843 16 C -0.148 4.148 17 C -0.154 4.154 18 C -0.160 4.160 19 N -0.263 5.263 20 C 0.169 3.831 21 N -0.596 5.596 22 C -0.233 4.233 23 H 0.073 0.927 24 C -0.052 4.052 25 N -0.933 5.933 26 Si 0.942 3.058 27 H -0.306 1.306 28 H -0.294 1.294 29 H -0.262 1.262 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.413 0.587 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.132 0.868 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.134 0.866 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.009 0.991 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -17.718 -11.903 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.039 0.961 4 C -0.162 4.162 5 C -0.147 4.147 6 C 0.020 3.980 7 H 0.097 0.903 8 N -0.314 5.314 9 C 0.389 3.611 10 O -0.430 6.430 11 C -0.166 4.166 12 N -0.140 5.140 13 N -0.049 5.049 14 N -0.028 5.028 15 C 0.079 3.921 16 C -0.206 4.206 17 C -0.213 4.213 18 C -0.219 4.219 19 N -0.117 5.117 20 C 0.042 3.958 21 N -0.320 5.320 22 C -0.364 4.364 23 H 0.090 0.910 24 C -0.247 4.247 25 N -0.580 5.580 26 Si 0.773 3.227 27 H -0.234 1.234 28 H -0.221 1.221 29 H -0.186 1.186 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.150 0.850 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.153 0.847 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.027 0.973 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.100 -17.994 -11.472 21.340 hybrid contribution -0.261 0.280 1.500 1.548 sum -0.161 -17.714 -9.972 20.329 Atomic orbital electron populations 1.21734 0.94944 1.01128 1.00870 1.20771 0.94037 0.93436 0.86767 0.96105 1.21984 0.94919 1.00914 0.98348 1.21690 0.97196 1.00203 0.95627 1.21780 0.96879 0.80847 0.98489 0.90337 1.45543 1.29311 1.07451 1.49125 1.16323 0.83308 0.81372 0.80081 1.90789 1.25963 1.84089 1.42121 1.25215 0.94960 0.96251 1.00198 1.76072 1.13832 1.04065 1.20021 1.78728 1.13008 1.03923 1.09286 1.51327 1.12023 1.11850 1.27572 1.22258 1.02034 0.70061 0.97760 1.22177 0.94773 1.01173 1.02449 1.22292 0.92507 1.04141 1.02325 1.22332 1.02805 1.06681 0.90049 1.74936 1.19037 0.96611 1.21092 1.20905 0.84214 0.95792 0.94896 1.44274 1.02292 1.65610 1.19825 1.19391 0.94985 1.35478 0.86506 0.90962 1.25628 0.98879 1.01431 0.98739 1.70122 1.24886 1.46645 1.16354 0.85619 0.79684 0.77837 0.79590 1.23402 1.22114 1.18637 0.94575 0.90477 0.93456 0.88797 0.92424 0.89797 0.89397 0.74947 0.90687 0.85163 0.91574 0.92105 0.84989 0.91495 0.92668 0.84730 0.92327 0.93304 0.97305 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 7.94 71.98 0.57 -3.95 16 2 C 0.16 5.91 3.50 44.96 0.16 6.07 16 3 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -3.57 5.20 30.66 0.16 -3.41 16 5 C -0.11 -3.16 5.59 30.62 0.17 -2.99 16 6 C 0.13 4.84 2.81 45.07 0.13 4.96 16 7 H 0.08 3.07 7.58 -2.39 -0.02 3.05 16 8 N -0.66 -25.71 4.91 -444.89 -2.19 -27.90 16 9 C 0.61 26.41 7.80 86.83 0.68 27.09 16 10 O -0.55 -27.61 16.76 -3.84 -0.06 -27.68 16 11 C 0.12 4.64 8.14 137.15 1.12 5.76 16 12 N -0.27 -9.60 12.26 -52.37 -0.64 -10.25 16 13 N -0.06 -1.78 12.21 37.02 0.45 -1.33 16 14 N -0.11 -3.16 3.72 -152.25 -0.57 -3.73 16 15 C 0.16 2.67 1.30 3.60 0.00 2.68 16 16 C -0.15 -1.63 7.90 71.98 0.57 -1.06 16 17 C -0.15 -1.94 8.66 71.98 0.62 -1.32 16 18 C -0.16 -2.53 8.67 71.98 0.62 -1.91 16 19 N -0.26 -9.51 11.85 -52.32 -0.62 -10.13 16 20 C 0.17 8.38 4.89 86.36 0.42 8.80 16 21 N -0.60 -29.01 2.91 -675.31 -1.96 -30.97 16 22 C -0.23 -12.74 8.60 84.03 0.72 -12.01 16 23 H 0.07 3.85 6.21 -2.91 -0.02 3.83 16 24 C -0.05 -3.03 4.96 84.86 0.42 -2.61 16 25 N -0.93 -58.12 11.14 21.65 0.24 -57.88 16 26 Si 0.94 48.04 29.58 68.60 2.03 50.07 16 27 H -0.31 -16.11 7.11 99.48 0.71 -15.41 16 28 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 29 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 30 H 0.04 1.41 7.62 -2.39 -0.02 1.40 16 31 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.05 1.69 7.45 -2.39 -0.02 1.67 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.71 6.40 -2.39 -0.02 1.70 16 35 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 37 H 0.41 14.67 6.52 -92.71 -0.60 14.07 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.05 2.92 6.06 -2.39 -0.01 2.91 16 48 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -78.34 390.88 3.40 -74.95 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.35 Total: 18.72 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 6.37 Total: 26.11 kcal Atomic # 7 Polarization: -136.89 SS G_CDS: -5.29 Total: -142.18 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.06 Total: -27.68 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -78.34 3.40 -74.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071519302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.314 kcal (2) G-P(sol) polarization free energy of solvation -78.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds