Wall clock time and date at job start Tue Mar 31 2020 21:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58489 * 2 1 4 4 C 1.53195 * 109.58280 * 120.42533 * 2 1 3 5 5 C 1.53039 * 109.31344 * 174.42084 * 4 2 1 6 6 C 1.53039 * 109.53914 * 298.63611 * 5 4 2 7 7 H 1.08996 * 109.49562 * 301.41179 * 6 5 4 8 8 N 1.46499 * 109.52455 * 181.33205 * 6 5 4 9 9 C 1.34769 * 119.99933 * 155.14536 * 8 6 5 10 10 O 1.21543 * 120.00201 * 0.02562 * 9 8 6 11 11 C 1.48009 * 120.00184 * 179.97438 * 9 8 6 12 12 N 1.34191 * 126.69459 * 0.02562 * 11 9 8 13 13 N 1.28984 * 107.25082 * 179.97438 * 12 11 9 14 14 N 1.28722 * 108.98684 * 0.02562 * 13 12 11 15 15 C 1.46499 * 125.31808 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47260 * 359.97438 * 15 14 13 17 17 C 1.53002 * 109.46804 * 119.97860 * 15 14 13 18 18 C 1.53001 * 109.47408 * 239.97622 * 15 14 13 19 19 N 1.28872 * 109.35924 * 359.72816 * 14 13 12 20 20 C 1.53192 * 109.31156 * 61.36127 * 6 5 4 21 21 N 1.46927 * 108.77872 * 305.36275 * 20 6 5 22 22 C 1.36928 * 120.63300 * 233.58728 * 21 20 6 23 23 H 1.08004 * 120.00160 * 150.86664 * 22 21 20 24 24 C 1.38809 * 120.00407 * 330.86657 * 22 21 20 25 25 N 1.31620 * 119.99787 * 343.81676 * 24 22 21 26 26 Si 1.86793 * 120.00361 * 163.81680 * 24 22 21 27 27 H 1.48504 * 109.47031 * 94.31122 * 26 24 22 28 28 H 1.48496 * 109.47382 * 214.30849 * 26 24 22 29 29 H 1.48497 * 109.47172 * 334.31467 * 26 24 22 30 30 H 1.08999 * 109.47361 * 180.28384 * 1 2 3 31 31 H 1.08999 * 109.47438 * 300.28980 * 1 2 3 32 32 H 1.09003 * 109.46782 * 60.28949 * 1 2 3 33 33 H 1.09002 * 109.49960 * 294.37559 * 4 2 1 34 34 H 1.09004 * 109.49605 * 54.46855 * 4 2 1 35 35 H 1.09001 * 109.46114 * 178.61333 * 5 4 2 36 36 H 1.09000 * 109.44758 * 58.64526 * 5 4 2 37 37 H 0.96994 * 119.99830 * 335.13859 * 8 6 5 38 38 H 1.08999 * 109.47110 * 59.99345 * 16 15 14 39 39 H 1.09004 * 109.47073 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.46975 * 299.99731 * 16 15 14 41 41 H 1.08998 * 109.47481 * 60.00008 * 17 15 14 42 42 H 1.08999 * 109.47273 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47205 * 299.99529 * 17 15 14 44 44 H 1.09001 * 109.46973 * 60.00180 * 18 15 14 45 45 H 1.08999 * 109.46829 * 180.02562 * 18 15 14 46 46 H 1.08998 * 109.47000 * 300.00067 * 18 15 14 47 47 H 1.09007 * 109.58736 * 185.57656 * 20 6 5 48 48 H 1.09002 * 109.70476 * 65.22585 * 20 6 5 49 49 H 0.96998 * 120.00378 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7309 1.2446 5 6 3.5674 -0.8495 1.1692 6 6 3.9568 -1.6657 -0.0653 7 1 3.4982 -2.6529 -0.0083 8 7 5.4141 -1.8060 -0.1198 9 6 5.9669 -2.8467 -0.7739 10 8 5.2564 -3.6685 -1.3190 11 6 7.4391 -2.9881 -0.8295 12 7 8.3451 -2.1651 -0.2794 13 7 9.5117 -2.6407 -0.5561 14 7 9.3719 -3.7159 -1.2499 15 6 10.4679 -4.5456 -1.7563 16 6 11.8062 -3.9363 -1.3336 17 6 10.3461 -5.9581 -1.1809 18 6 10.3961 -4.6091 -3.2833 19 7 8.1170 -3.9512 -1.4249 20 6 3.4650 -0.9454 -1.3247 21 7 2.0225 -0.6982 -1.1953 22 6 1.1538 -1.1101 -2.1703 23 1 0.1365 -1.3668 -1.9139 24 6 1.5805 -1.1978 -3.4883 25 7 2.6908 -0.5978 -3.8618 26 14 0.5790 -2.1674 -4.7317 27 1 -0.3431 -1.2499 -5.4480 28 1 1.4929 -2.8124 -5.7084 29 1 -0.2090 -3.2105 -4.0274 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8873 32 1 -0.3633 0.5094 -0.8926 33 1 1.7659 -0.1695 2.1367 34 1 1.6028 -1.7269 1.2892 35 1 3.9376 -1.3475 2.0654 36 1 4.0058 0.1460 1.0995 37 1 5.9810 -1.1499 0.3148 38 1 11.8574 -3.8910 -0.2458 39 1 12.6217 -4.5539 -1.7100 40 1 11.8929 -2.9300 -1.7436 41 1 9.3927 -6.3922 -1.4821 42 1 11.1618 -6.5753 -1.5573 43 1 10.3973 -5.9129 -0.0930 44 1 10.4829 -3.6028 -3.6932 45 1 11.2114 -5.2268 -3.6600 46 1 9.4427 -5.0431 -3.5845 47 1 3.6518 -1.5692 -2.1990 48 1 3.9901 0.0035 -1.4341 49 1 2.9892 -0.6593 -4.7827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071519304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:08 Heat of formation + Delta-G solvation = 109.788202 kcal Electronic energy + Delta-G solvation = -30025.796471 eV Core-core repulsion = 26026.803445 eV Total energy + Delta-G solvation = -3998.993026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.44233 -39.47541 -37.95777 -37.50077 -34.52543 -33.52573 -32.81798 -32.52124 -30.62826 -29.81029 -28.08820 -28.01245 -26.43065 -25.29519 -24.59732 -24.30370 -22.24765 -21.09586 -20.85868 -20.11774 -19.30792 -17.82997 -17.43549 -16.83961 -16.40010 -15.63152 -15.17740 -14.78506 -14.67473 -14.24572 -14.12839 -13.95063 -13.75660 -13.59943 -13.37099 -13.31209 -12.96547 -12.84555 -12.73653 -12.37583 -12.31585 -12.28297 -11.96723 -11.85600 -11.58890 -11.44698 -11.09468 -11.08048 -11.03171 -10.87516 -10.66351 -10.53458 -10.37150 -10.35824 -10.22676 -10.02914 -9.89781 -9.54425 -9.43217 -8.59312 -8.38156 -6.57715 -5.70290 -3.14057 1.03393 1.54637 1.57585 3.03689 3.40354 3.45122 3.52891 3.54977 3.78171 4.05300 4.13130 4.18054 4.55125 4.61270 4.93835 4.95852 4.99427 5.12680 5.17308 5.19082 5.28739 5.37338 5.40585 5.45139 5.51738 5.58471 5.61194 5.64190 5.71423 5.77202 5.99058 6.03237 6.14859 6.30442 6.32172 6.42585 6.47347 6.50658 6.66515 6.74507 6.87300 7.08145 7.16442 7.32963 7.75229 7.76258 7.90830 8.19366 8.43464 8.54175 9.28086 9.92885 10.48149 11.37978 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.003038 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.139627 B = 9215.114956 C =10583.705082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.118 3.882 7 H 0.086 0.914 8 N -0.695 5.695 9 C 0.610 3.390 10 O -0.500 6.500 11 C 0.136 3.864 12 N -0.259 5.259 13 N -0.060 5.060 14 N -0.128 5.128 15 C 0.177 3.823 16 C -0.152 4.152 17 C -0.160 4.160 18 C -0.162 4.162 19 N -0.246 5.246 20 C 0.167 3.833 21 N -0.582 5.582 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.020 0.980 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.728 -6.423 8.134 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.013 3.987 7 H 0.104 0.896 8 N -0.346 5.346 9 C 0.389 3.611 10 O -0.371 6.371 11 C -0.149 4.149 12 N -0.133 5.133 13 N -0.053 5.053 14 N -0.043 5.043 15 C 0.096 3.904 16 C -0.210 4.210 17 C -0.219 4.219 18 C -0.220 4.220 19 N -0.099 5.099 20 C 0.039 3.961 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.203 1.203 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.237 0.763 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.112 0.888 48 H 0.038 0.962 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.835 -6.898 7.650 20.596 hybrid contribution -0.443 -0.224 -0.654 0.821 sum 17.393 -7.121 6.996 20.054 Atomic orbital electron populations 1.21803 0.95988 1.01384 1.00223 1.20506 0.93093 0.93624 0.87026 0.95634 1.22047 0.94124 1.01383 0.98962 1.21686 0.97482 0.99823 0.96490 1.22150 0.76356 1.01353 0.98820 0.89559 1.45813 1.09122 1.25761 1.53916 1.16112 0.81740 0.82945 0.80338 1.90894 1.60124 1.42058 1.43994 1.25574 0.98409 0.91069 0.99839 1.76115 0.94280 1.23327 1.19608 1.78825 1.18950 0.98658 1.08875 1.50716 1.05166 1.16609 1.31830 1.21483 0.82618 0.90111 0.96148 1.22099 0.92819 1.02480 1.03630 1.22257 1.04924 0.92678 1.01992 1.22270 1.04981 1.04163 0.90580 1.75016 0.90706 1.23811 1.20380 1.21094 0.83733 0.97102 0.94128 1.44014 1.02531 1.64822 1.19220 1.19129 0.94765 1.38281 0.86048 0.91168 1.25069 0.97803 0.99380 0.97025 1.70010 1.24076 1.43534 1.16718 0.86330 0.79315 0.80057 0.81375 1.21580 1.21611 1.20332 0.92793 0.94341 0.91988 0.92534 0.91991 0.92816 0.91962 0.76259 0.90556 0.89174 0.90468 0.90127 0.89043 0.91348 0.91193 0.89038 0.90082 0.88786 0.96154 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.94 37.16 0.30 -2.27 16 2 C 0.16 3.36 3.50 -67.60 -0.24 3.13 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.13 5.37 -26.61 -0.14 -2.27 16 5 C -0.12 -1.90 5.36 -26.69 -0.14 -2.05 16 6 C 0.12 2.33 2.60 -67.81 -0.18 2.15 16 7 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 8 N -0.69 -12.34 5.08 -54.58 -0.28 -12.62 16 9 C 0.61 11.98 7.80 -12.26 -0.10 11.88 16 10 O -0.50 -11.72 16.76 5.33 0.09 -11.64 16 11 C 0.14 2.36 8.14 -156.24 -1.27 1.09 16 12 N -0.26 -4.11 12.26 32.10 0.39 -3.72 16 13 N -0.06 -0.85 12.21 60.35 0.74 -0.11 16 14 N -0.13 -1.65 3.72 0.52 0.00 -1.65 16 15 C 0.18 1.43 1.30 -131.82 -0.17 1.26 16 16 C -0.15 -0.86 7.90 37.16 0.29 -0.57 16 17 C -0.16 -1.05 8.66 37.16 0.32 -0.73 16 18 C -0.16 -1.16 8.66 37.16 0.32 -0.84 16 19 N -0.25 -3.98 11.85 32.11 0.38 -3.60 16 20 C 0.17 4.08 4.87 -3.71 -0.02 4.06 16 21 N -0.58 -14.56 2.99 -164.77 -0.49 -15.06 16 22 C -0.25 -6.95 8.59 -15.06 -0.13 -7.08 16 23 H 0.07 1.87 6.22 -52.48 -0.33 1.55 16 24 C 0.01 0.18 4.93 -17.43 -0.09 0.09 16 25 N -0.90 -26.96 11.22 55.49 0.62 -26.33 16 26 Si 0.90 22.59 29.58 -169.99 -5.03 17.56 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.05 1.03 7.45 -51.93 -0.39 0.64 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 6.10 8.35 -40.82 -0.34 5.76 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 2.71 6.11 -51.93 -0.32 2.40 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -34.08 394.51 -6.93 -41.00 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.06 Total: 2.35 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.24 Total: 7.86 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 1.37 Total: -63.09 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.08 -6.93 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071519304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.791 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds