Wall clock time and date at job start Tue Mar 31 2020 21:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58489 * 2 1 4 4 C 1.53195 * 109.58280 * 120.42533 * 2 1 3 5 5 C 1.53039 * 109.31344 * 174.42084 * 4 2 1 6 6 C 1.53039 * 109.53914 * 298.63611 * 5 4 2 7 7 H 1.08996 * 109.49562 * 301.41179 * 6 5 4 8 8 N 1.46499 * 109.52455 * 181.33205 * 6 5 4 9 9 C 1.34769 * 119.99933 * 155.14536 * 8 6 5 10 10 O 1.21543 * 120.00201 * 0.02562 * 9 8 6 11 11 C 1.48009 * 120.00184 * 179.97438 * 9 8 6 12 12 N 1.34191 * 126.69459 * 0.02562 * 11 9 8 13 13 N 1.28984 * 107.25082 * 179.97438 * 12 11 9 14 14 N 1.28722 * 108.98684 * 0.02562 * 13 12 11 15 15 C 1.46499 * 125.31808 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47260 * 359.97438 * 15 14 13 17 17 C 1.53002 * 109.46804 * 119.97860 * 15 14 13 18 18 C 1.53001 * 109.47408 * 239.97622 * 15 14 13 19 19 N 1.28872 * 109.35924 * 359.72816 * 14 13 12 20 20 C 1.53192 * 109.31156 * 61.36127 * 6 5 4 21 21 N 1.46927 * 108.77872 * 305.36275 * 20 6 5 22 22 C 1.36928 * 120.63300 * 233.58728 * 21 20 6 23 23 H 1.08004 * 120.00160 * 150.86664 * 22 21 20 24 24 C 1.38809 * 120.00407 * 330.86657 * 22 21 20 25 25 N 1.31620 * 119.99787 * 343.81676 * 24 22 21 26 26 Si 1.86793 * 120.00361 * 163.81680 * 24 22 21 27 27 H 1.48504 * 109.47031 * 94.31122 * 26 24 22 28 28 H 1.48496 * 109.47382 * 214.30849 * 26 24 22 29 29 H 1.48497 * 109.47172 * 334.31467 * 26 24 22 30 30 H 1.08999 * 109.47361 * 180.28384 * 1 2 3 31 31 H 1.08999 * 109.47438 * 300.28980 * 1 2 3 32 32 H 1.09003 * 109.46782 * 60.28949 * 1 2 3 33 33 H 1.09002 * 109.49960 * 294.37559 * 4 2 1 34 34 H 1.09004 * 109.49605 * 54.46855 * 4 2 1 35 35 H 1.09001 * 109.46114 * 178.61333 * 5 4 2 36 36 H 1.09000 * 109.44758 * 58.64526 * 5 4 2 37 37 H 0.96994 * 119.99830 * 335.13859 * 8 6 5 38 38 H 1.08999 * 109.47110 * 59.99345 * 16 15 14 39 39 H 1.09004 * 109.47073 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.46975 * 299.99731 * 16 15 14 41 41 H 1.08998 * 109.47481 * 60.00008 * 17 15 14 42 42 H 1.08999 * 109.47273 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47205 * 299.99529 * 17 15 14 44 44 H 1.09001 * 109.46973 * 60.00180 * 18 15 14 45 45 H 1.08999 * 109.46829 * 180.02562 * 18 15 14 46 46 H 1.08998 * 109.47000 * 300.00067 * 18 15 14 47 47 H 1.09007 * 109.58736 * 185.57656 * 20 6 5 48 48 H 1.09002 * 109.70476 * 65.22585 * 20 6 5 49 49 H 0.96998 * 120.00378 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7309 1.2446 5 6 3.5674 -0.8495 1.1692 6 6 3.9568 -1.6657 -0.0653 7 1 3.4982 -2.6529 -0.0083 8 7 5.4141 -1.8060 -0.1198 9 6 5.9669 -2.8467 -0.7739 10 8 5.2564 -3.6685 -1.3190 11 6 7.4391 -2.9881 -0.8295 12 7 8.3451 -2.1651 -0.2794 13 7 9.5117 -2.6407 -0.5561 14 7 9.3719 -3.7159 -1.2499 15 6 10.4679 -4.5456 -1.7563 16 6 11.8062 -3.9363 -1.3336 17 6 10.3461 -5.9581 -1.1809 18 6 10.3961 -4.6091 -3.2833 19 7 8.1170 -3.9512 -1.4249 20 6 3.4650 -0.9454 -1.3247 21 7 2.0225 -0.6982 -1.1953 22 6 1.1538 -1.1101 -2.1703 23 1 0.1365 -1.3668 -1.9139 24 6 1.5805 -1.1978 -3.4883 25 7 2.6908 -0.5978 -3.8618 26 14 0.5790 -2.1674 -4.7317 27 1 -0.3431 -1.2499 -5.4480 28 1 1.4929 -2.8124 -5.7084 29 1 -0.2090 -3.2105 -4.0274 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8873 32 1 -0.3633 0.5094 -0.8926 33 1 1.7659 -0.1695 2.1367 34 1 1.6028 -1.7269 1.2892 35 1 3.9376 -1.3475 2.0654 36 1 4.0058 0.1460 1.0995 37 1 5.9810 -1.1499 0.3148 38 1 11.8574 -3.8910 -0.2458 39 1 12.6217 -4.5539 -1.7100 40 1 11.8929 -2.9300 -1.7436 41 1 9.3927 -6.3922 -1.4821 42 1 11.1618 -6.5753 -1.5573 43 1 10.3973 -5.9129 -0.0930 44 1 10.4829 -3.6028 -3.6932 45 1 11.2114 -5.2268 -3.6600 46 1 9.4427 -5.0431 -3.5845 47 1 3.6518 -1.5692 -2.1990 48 1 3.9901 0.0035 -1.4341 49 1 2.9892 -0.6593 -4.7827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071519304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:07 Heat of formation + Delta-G solvation = 85.349784 kcal Electronic energy + Delta-G solvation = -30026.856200 eV Core-core repulsion = 26026.803445 eV Total energy + Delta-G solvation = -4000.052755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.62629 -41.07394 -39.29727 -38.61820 -36.19551 -34.77162 -34.61711 -33.73395 -32.17088 -31.71598 -28.67849 -28.56277 -27.95213 -27.13349 -25.84330 -25.60379 -24.00803 -22.55128 -22.02532 -21.56372 -20.98839 -19.11743 -18.59223 -18.32772 -17.77637 -17.37689 -16.93858 -16.11624 -15.87815 -15.57582 -15.30316 -15.27057 -15.17478 -15.09680 -14.95926 -14.48879 -14.17722 -14.05559 -13.52688 -13.49581 -13.31535 -13.24055 -13.09074 -12.86949 -12.79583 -12.68959 -12.65981 -12.54261 -12.38869 -12.28890 -12.15334 -12.13593 -12.12793 -12.01323 -11.74633 -11.54308 -11.49360 -11.27395 -11.13336 -10.53040 -10.25888 -8.62446 -7.85027 -5.30227 -0.18556 0.23077 0.62390 1.40945 1.45533 1.53329 1.65610 1.89928 2.50601 2.76430 2.93176 3.32230 3.46354 3.54116 3.61606 3.71297 3.89773 3.98997 4.10280 4.24040 4.29077 4.38632 4.39556 4.50107 4.56127 4.58232 4.59738 4.71238 4.71600 4.72814 4.80167 4.90180 5.00215 5.02984 5.08778 5.09410 5.15680 5.16179 5.21155 5.24139 5.32119 5.36423 5.57153 5.62142 5.71882 5.77434 6.24882 6.43295 6.89016 7.01826 7.16637 7.90381 8.40013 9.20567 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.003038 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.139627 B = 9215.114956 C =10583.705082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.023 0.977 4 C -0.116 4.116 5 C -0.109 4.109 6 C 0.132 3.868 7 H 0.064 0.936 8 N -0.680 5.680 9 C 0.610 3.390 10 O -0.548 6.548 11 C 0.117 3.883 12 N -0.263 5.263 13 N -0.054 5.054 14 N -0.109 5.109 15 C 0.158 3.842 16 C -0.148 4.148 17 C -0.157 4.157 18 C -0.160 4.160 19 N -0.261 5.261 20 C 0.178 3.822 21 N -0.601 5.601 22 C -0.248 4.248 23 H 0.077 0.923 24 C -0.054 4.054 25 N -0.935 5.935 26 Si 0.956 3.044 27 H -0.280 1.280 28 H -0.302 1.302 29 H -0.268 1.268 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.418 0.582 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.131 0.869 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.132 0.868 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.000 1.000 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.153 -6.867 10.339 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.026 3.974 7 H 0.082 0.918 8 N -0.332 5.332 9 C 0.391 3.609 10 O -0.422 6.422 11 C -0.166 4.166 12 N -0.138 5.138 13 N -0.047 5.047 14 N -0.026 5.026 15 C 0.080 3.920 16 C -0.206 4.206 17 C -0.215 4.215 18 C -0.218 4.218 19 N -0.115 5.115 20 C 0.051 3.949 21 N -0.325 5.325 22 C -0.379 4.379 23 H 0.095 0.905 24 C -0.249 4.249 25 N -0.581 5.581 26 Si 0.784 3.216 27 H -0.207 1.207 28 H -0.229 1.229 29 H -0.193 1.193 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.256 0.744 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.149 0.851 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.151 0.849 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.018 0.982 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.270 -7.306 9.917 22.870 hybrid contribution -0.761 -0.101 -1.334 1.539 sum 18.508 -7.407 8.583 21.704 Atomic orbital electron populations 1.21736 0.94645 1.01231 1.01072 1.20842 0.94391 0.93448 0.86661 0.95966 1.21953 0.94095 1.01123 0.98380 1.21681 0.97412 1.00052 0.95520 1.21764 0.77095 1.00090 0.98405 0.91819 1.45642 1.08642 1.25637 1.53290 1.16377 0.82638 0.82532 0.79383 1.90860 1.61597 1.43808 1.45948 1.25077 0.97529 0.92375 1.01660 1.76073 0.94397 1.23417 1.19894 1.78744 1.18034 0.98979 1.08911 1.51341 1.05021 1.16141 1.30138 1.22260 0.82290 0.90661 0.96833 1.22179 0.92128 1.02699 1.03575 1.22307 1.05440 0.91846 1.01889 1.22328 1.05415 1.04232 0.89834 1.74975 0.92148 1.23853 1.20498 1.20760 0.84078 0.95432 0.94659 1.44305 1.02311 1.65716 1.20211 1.19487 0.95260 1.36536 0.86589 0.90523 1.25797 0.99095 1.01045 0.99006 1.70174 1.25960 1.45658 1.16333 0.85425 0.77929 0.79016 0.79193 1.20691 1.22896 1.19308 0.93412 0.90232 0.94364 0.88327 0.92542 0.89304 0.90687 0.74442 0.90795 0.85278 0.91256 0.92180 0.85060 0.91587 0.92170 0.84932 0.92341 0.93880 0.98210 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 7.94 71.98 0.57 -4.06 16 2 C 0.15 6.03 3.50 44.97 0.16 6.19 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.59 5.37 30.67 0.16 -3.42 16 5 C -0.11 -3.27 5.36 30.62 0.16 -3.11 16 6 C 0.13 5.27 2.60 45.07 0.12 5.39 16 7 H 0.06 2.87 7.58 -2.39 -0.02 2.85 16 8 N -0.68 -24.60 5.08 -444.89 -2.26 -26.85 16 9 C 0.61 25.02 7.80 86.84 0.68 25.70 16 10 O -0.55 -27.27 16.76 -3.85 -0.06 -27.33 16 11 C 0.12 4.21 8.14 137.15 1.12 5.32 16 12 N -0.26 -8.38 12.26 -52.36 -0.64 -9.02 16 13 N -0.05 -1.50 12.21 37.02 0.45 -1.04 16 14 N -0.11 -2.78 3.72 -152.25 -0.57 -3.34 16 15 C 0.16 2.29 1.30 3.61 0.00 2.30 16 16 C -0.15 -1.27 7.90 71.98 0.57 -0.70 16 17 C -0.16 -1.74 8.66 71.98 0.62 -1.11 16 18 C -0.16 -2.07 8.66 71.98 0.62 -1.44 16 19 N -0.26 -8.65 11.85 -52.31 -0.62 -9.27 16 20 C 0.18 9.10 4.87 86.36 0.42 9.52 16 21 N -0.60 -30.69 2.99 -675.22 -2.02 -32.71 16 22 C -0.25 -14.00 8.59 84.03 0.72 -13.28 16 23 H 0.08 4.14 6.22 -2.91 -0.02 4.12 16 24 C -0.05 -3.23 4.93 84.86 0.42 -2.81 16 25 N -0.93 -59.02 11.22 21.65 0.24 -58.78 16 26 Si 0.96 48.09 29.58 68.60 2.03 50.12 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 29 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 30 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 34 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.42 12.49 8.35 -92.71 -0.77 11.71 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.04 2.64 6.11 -2.38 -0.01 2.63 16 48 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 49 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -80.52 394.51 3.08 -77.44 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.18 Total: 16.32 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.35 Total: 24.47 kcal Atomic # 7 Polarization: -135.61 SS G_CDS: -5.41 Total: -141.02 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.06 Total: -27.33 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -80.52 3.08 -77.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071519304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.793 kcal (2) G-P(sol) polarization free energy of solvation -80.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds