Wall clock time and date at job start Tue Mar 31 2020 21:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.57978 * 2 1 4 4 C 1.53188 * 109.58752 * 120.27897 * 2 1 3 5 5 C 1.53034 * 109.31155 * 174.56546 * 4 2 1 6 6 C 1.53041 * 109.54075 * 298.63528 * 5 4 2 7 7 H 1.08999 * 109.49653 * 181.34896 * 6 5 4 8 8 N 1.46502 * 109.49814 * 301.41630 * 6 5 4 9 9 C 1.34778 * 119.99672 * 204.99814 * 8 6 5 10 10 O 1.21532 * 120.00018 * 359.97438 * 9 8 6 11 11 C 1.48003 * 119.99774 * 179.97438 * 9 8 6 12 12 N 1.34195 * 126.69693 * 0.02688 * 11 9 8 13 13 N 1.28983 * 107.24948 * 179.97438 * 12 11 9 14 14 N 1.28719 * 108.98799 * 0.02562 * 13 12 11 15 15 C 1.46508 * 125.31879 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.46691 * 359.96954 * 15 14 13 17 17 C 1.52995 * 109.47242 * 119.96984 * 15 14 13 18 18 C 1.53002 * 109.46948 * 239.96997 * 15 14 13 19 19 N 1.28868 * 109.35905 * 359.72310 * 14 13 12 20 20 C 1.53185 * 109.31022 * 61.36607 * 6 5 4 21 21 N 1.46927 * 109.58725 * 239.71926 * 2 1 3 22 22 C 1.36939 * 120.63151 * 6.45878 * 21 2 1 23 23 H 1.07996 * 119.99791 * 331.08811 * 22 21 2 24 24 C 1.38811 * 120.00019 * 151.08320 * 22 21 2 25 25 N 1.31611 * 120.00137 * 160.80976 * 24 22 21 26 26 Si 1.86806 * 119.99802 * 340.80966 * 24 22 21 27 27 H 1.48500 * 109.47035 * 92.34745 * 26 24 22 28 28 H 1.48496 * 109.46873 * 212.34993 * 26 24 22 29 29 H 1.48507 * 109.47127 * 332.35232 * 26 24 22 30 30 H 1.08996 * 109.47006 * 300.00152 * 1 2 3 31 31 H 1.08998 * 109.46738 * 59.99998 * 1 2 3 32 32 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.50007 * 294.51938 * 4 2 1 34 34 H 1.09003 * 109.49609 * 54.61418 * 4 2 1 35 35 H 1.08999 * 109.46019 * 58.66208 * 5 4 2 36 36 H 1.09001 * 109.45944 * 178.61823 * 5 4 2 37 37 H 0.97002 * 120.00009 * 24.99517 * 8 6 5 38 38 H 1.08997 * 109.47432 * 60.00438 * 16 15 14 39 39 H 1.09004 * 109.46477 * 180.02562 * 16 15 14 40 40 H 1.09003 * 109.47341 * 299.99944 * 16 15 14 41 41 H 1.08993 * 109.47193 * 59.99762 * 17 15 14 42 42 H 1.09003 * 109.47219 * 180.02562 * 17 15 14 43 43 H 1.09005 * 109.47132 * 299.99558 * 17 15 14 44 44 H 1.09003 * 109.47180 * 59.99997 * 18 15 14 45 45 H 1.08998 * 109.46960 * 179.97438 * 18 15 14 46 46 H 1.08993 * 109.46969 * 299.99920 * 18 15 14 47 47 H 1.09001 * 109.58962 * 65.15353 * 20 6 5 48 48 H 1.09005 * 109.59137 * 185.43311 * 20 6 5 49 49 H 0.97003 * 119.99830 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5678 -0.8432 1.1729 6 6 3.9604 -1.6607 -0.0599 7 1 5.0449 -1.7628 -0.0984 8 7 3.3466 -2.9887 0.0183 9 6 3.9061 -4.0289 -0.6310 10 8 4.9195 -3.8651 -1.2816 11 6 3.2864 -5.3705 -0.5516 12 7 2.1745 -5.7016 0.1228 13 7 1.9747 -6.9621 -0.0644 14 7 2.9076 -7.4263 -0.8201 15 6 3.0272 -8.8187 -1.2598 16 6 1.8713 -9.6373 -0.6810 17 6 2.9784 -8.8770 -2.7878 18 6 4.3566 -9.3959 -0.7695 19 7 3.7163 -6.4736 -1.1346 20 6 3.4686 -0.9436 -1.3210 21 7 2.0226 -0.6980 -1.1954 22 6 1.1535 -1.1129 -2.1688 23 1 0.1361 -1.3680 -1.9113 24 6 1.5800 -1.2055 -3.4866 25 7 0.9062 -1.9397 -4.3463 26 14 3.1103 -0.2880 -4.0396 27 1 4.2941 -1.1748 -3.9071 28 1 2.9557 0.1226 -5.4582 29 1 3.2978 0.9175 -3.1928 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1653 2.1371 34 1 1.6050 -1.7245 1.2922 35 1 4.0045 0.1530 1.1022 36 1 3.9381 -1.3389 2.0703 37 1 2.5376 -3.1193 0.5373 38 1 0.9242 -9.2261 -1.0302 39 1 1.9606 -10.6734 -1.0077 40 1 1.9061 -9.5958 0.4077 41 1 3.8017 -8.2938 -3.2001 42 1 3.0669 -9.9130 -3.1149 43 1 2.0312 -8.4659 -3.1371 44 1 4.3914 -9.3544 0.3192 45 1 4.4454 -10.4320 -1.0963 46 1 5.1800 -8.8127 -1.1818 47 1 3.9920 0.0064 -1.4288 48 1 3.6600 -1.5672 -2.1942 49 1 1.2041 -2.0041 -5.2672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071519306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:13 Heat of formation + Delta-G solvation = 117.104729 kcal Electronic energy + Delta-G solvation = -30996.665452 eV Core-core repulsion = 26997.989695 eV Total energy + Delta-G solvation = -3998.675757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.26956 -39.66203 -37.95692 -37.56016 -34.35240 -33.37553 -32.72640 -32.41423 -30.72229 -30.65712 -27.96658 -27.88728 -26.59341 -25.25760 -24.59844 -24.34000 -22.66035 -21.18946 -20.75633 -20.32646 -18.90127 -17.99789 -17.26935 -16.80423 -16.49776 -15.52368 -15.31174 -14.77092 -14.65122 -14.51295 -14.26774 -13.96599 -13.77074 -13.55295 -13.44265 -13.24088 -12.96044 -12.83949 -12.71613 -12.55312 -12.19553 -12.13391 -12.05704 -11.84030 -11.77072 -11.48882 -11.45066 -11.23608 -10.94306 -10.90445 -10.85955 -10.51111 -10.40329 -10.24350 -10.20673 -9.97484 -9.89583 -9.64729 -9.32445 -8.74280 -8.42159 -6.85825 -5.86696 -3.23826 1.19195 1.71008 1.73073 3.12757 3.45454 3.52079 3.55265 3.57163 3.91961 4.17992 4.26748 4.31361 4.62251 4.72118 4.90673 5.04819 5.06525 5.12771 5.17626 5.23141 5.30053 5.31193 5.33009 5.33313 5.46601 5.52751 5.58903 5.69769 5.77797 5.78838 5.90388 5.97215 6.01096 6.13590 6.19078 6.24343 6.28833 6.34403 6.39928 6.52770 6.55976 6.71680 6.90507 7.00793 7.10950 7.79729 8.04212 8.33834 8.42667 8.50519 9.00698 9.80923 10.17526 11.28842 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.003916 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.174062 B = 7149.296057 C = 7792.039487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.170 3.830 3 H 0.030 0.970 4 C -0.135 4.135 5 C -0.118 4.118 6 C 0.129 3.871 7 H 0.085 0.915 8 N -0.676 5.676 9 C 0.617 3.383 10 O -0.519 6.519 11 C 0.138 3.862 12 N -0.252 5.252 13 N -0.059 5.059 14 N -0.129 5.129 15 C 0.178 3.822 16 C -0.152 4.152 17 C -0.162 4.162 18 C -0.159 4.159 19 N -0.248 5.248 20 C 0.112 3.888 21 N -0.598 5.598 22 C -0.255 4.255 23 H 0.091 0.909 24 C 0.027 3.973 25 N -0.909 5.909 26 Si 0.873 3.127 27 H -0.285 1.285 28 H -0.305 1.305 29 H -0.270 1.270 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.409 0.591 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.036 0.964 48 H 0.080 0.920 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -12.997 11.264 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 H 0.048 0.952 4 C -0.174 4.174 5 C -0.156 4.156 6 C 0.023 3.977 7 H 0.103 0.897 8 N -0.328 5.328 9 C 0.397 3.603 10 O -0.392 6.392 11 C -0.146 4.146 12 N -0.127 5.127 13 N -0.052 5.052 14 N -0.043 5.043 15 C 0.097 3.903 16 C -0.210 4.210 17 C -0.221 4.221 18 C -0.217 4.217 19 N -0.101 5.101 20 C -0.014 4.014 21 N -0.323 5.323 22 C -0.383 4.383 23 H 0.108 0.892 24 C -0.172 4.172 25 N -0.552 5.552 26 Si 0.704 3.296 27 H -0.212 1.212 28 H -0.233 1.233 29 H -0.195 1.195 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.246 0.754 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.098 0.902 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.801 -13.353 10.773 17.816 hybrid contribution 0.739 0.707 -0.544 1.158 sum 5.539 -12.645 10.230 17.182 Atomic orbital electron populations 1.21808 0.95308 1.01925 1.00366 1.20480 0.93612 0.93393 0.86147 0.95205 1.22094 0.94811 1.01380 0.99113 1.21700 0.97416 1.00063 0.96466 1.21617 0.97308 0.81141 0.97643 0.89678 1.45540 1.29544 1.07457 1.50256 1.16043 0.83440 0.80564 0.80274 1.90811 1.24329 1.83464 1.40587 1.25350 0.94205 0.96320 0.98697 1.76125 1.13763 1.03091 1.19686 1.78826 1.12497 1.04611 1.09291 1.50665 1.13731 1.10709 1.29239 1.21454 0.99549 0.72204 0.97102 1.22097 0.96736 0.99602 1.02609 1.22271 1.04730 1.04346 0.90705 1.22243 0.94707 1.02332 1.02440 1.74956 1.18528 0.96184 1.20468 1.21849 0.85932 0.97279 0.96389 1.44451 1.01554 1.65602 1.20649 1.18858 0.95524 1.38295 0.85605 0.89187 1.25276 0.97325 0.98705 0.95893 1.69816 1.41284 1.39569 1.04579 0.87063 0.84105 0.81468 0.76976 1.21190 1.23317 1.19503 0.94166 0.91809 0.92411 0.92159 0.91959 0.90636 0.92132 0.75377 0.90361 0.89256 0.90596 0.90161 0.89139 0.91014 0.91407 0.89121 0.90247 0.94603 0.90161 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.95 37.16 0.30 -2.16 16 2 C 0.17 3.18 3.49 -67.60 -0.24 2.94 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.04 5.21 -26.62 -0.14 -2.18 16 5 C -0.12 -1.71 5.59 -26.69 -0.15 -1.86 16 6 C 0.13 2.33 2.81 -67.81 -0.19 2.14 16 7 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 8 N -0.68 -12.72 4.92 -54.58 -0.27 -12.99 16 9 C 0.62 12.85 7.80 -12.26 -0.10 12.76 16 10 O -0.52 -12.12 16.76 5.34 0.09 -12.03 16 11 C 0.14 2.70 8.14 -156.25 -1.27 1.43 16 12 N -0.25 -4.65 12.26 32.10 0.39 -4.25 16 13 N -0.06 -0.97 12.21 60.35 0.74 -0.23 16 14 N -0.13 -1.90 3.72 0.53 0.00 -1.90 16 15 C 0.18 1.72 1.30 -131.81 -0.17 1.55 16 16 C -0.15 -1.11 7.90 37.16 0.29 -0.82 16 17 C -0.16 -1.47 8.66 37.15 0.32 -1.15 16 18 C -0.16 -1.20 8.67 37.16 0.32 -0.88 16 19 N -0.25 -4.47 11.85 32.11 0.38 -4.09 16 20 C 0.11 2.50 3.81 -3.56 -0.01 2.49 16 21 N -0.60 -13.80 2.68 -164.55 -0.44 -14.24 16 22 C -0.25 -6.99 9.05 -15.06 -0.14 -7.13 16 23 H 0.09 2.62 6.38 -52.49 -0.34 2.28 16 24 C 0.03 0.79 5.25 -17.43 -0.09 0.70 16 25 N -0.91 -28.59 13.97 55.49 0.78 -27.81 16 26 Si 0.87 23.32 24.35 -169.99 -4.14 19.19 16 27 H -0.28 -7.71 6.62 56.52 0.37 -7.34 16 28 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 29 H -0.27 -6.93 6.62 56.52 0.37 -6.55 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.27 7.64 -51.93 -0.40 0.87 16 32 H 0.06 1.10 7.42 -51.93 -0.39 0.72 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.41 7.27 6.52 -40.82 -0.27 7.01 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.04 0.78 7.04 -51.93 -0.37 0.42 16 48 H 0.08 2.10 4.62 -51.93 -0.24 1.86 16 49 H 0.26 7.89 8.31 -40.82 -0.34 7.56 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -35.19 384.58 -5.76 -40.95 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.82 Total: 3.78 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.26 Total: 7.84 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: 1.58 Total: -65.52 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.14 Total: 19.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.19 -5.76 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071519306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.053 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds