Wall clock time and date at job start Tue Mar 31 2020 21:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.57978 * 2 1 4 4 C 1.53188 * 109.58752 * 120.27897 * 2 1 3 5 5 C 1.53034 * 109.31155 * 174.56546 * 4 2 1 6 6 C 1.53041 * 109.54075 * 298.63528 * 5 4 2 7 7 H 1.08999 * 109.49653 * 181.34896 * 6 5 4 8 8 N 1.46502 * 109.49814 * 301.41630 * 6 5 4 9 9 C 1.34778 * 119.99672 * 204.99814 * 8 6 5 10 10 O 1.21532 * 120.00018 * 359.97438 * 9 8 6 11 11 C 1.48003 * 119.99774 * 179.97438 * 9 8 6 12 12 N 1.34195 * 126.69693 * 0.02688 * 11 9 8 13 13 N 1.28983 * 107.24948 * 179.97438 * 12 11 9 14 14 N 1.28719 * 108.98799 * 0.02562 * 13 12 11 15 15 C 1.46508 * 125.31879 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.46691 * 359.96954 * 15 14 13 17 17 C 1.52995 * 109.47242 * 119.96984 * 15 14 13 18 18 C 1.53002 * 109.46948 * 239.96997 * 15 14 13 19 19 N 1.28868 * 109.35905 * 359.72310 * 14 13 12 20 20 C 1.53185 * 109.31022 * 61.36607 * 6 5 4 21 21 N 1.46927 * 109.58725 * 239.71926 * 2 1 3 22 22 C 1.36939 * 120.63151 * 6.45878 * 21 2 1 23 23 H 1.07996 * 119.99791 * 331.08811 * 22 21 2 24 24 C 1.38811 * 120.00019 * 151.08320 * 22 21 2 25 25 N 1.31611 * 120.00137 * 160.80976 * 24 22 21 26 26 Si 1.86806 * 119.99802 * 340.80966 * 24 22 21 27 27 H 1.48500 * 109.47035 * 92.34745 * 26 24 22 28 28 H 1.48496 * 109.46873 * 212.34993 * 26 24 22 29 29 H 1.48507 * 109.47127 * 332.35232 * 26 24 22 30 30 H 1.08996 * 109.47006 * 300.00152 * 1 2 3 31 31 H 1.08998 * 109.46738 * 59.99998 * 1 2 3 32 32 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.50007 * 294.51938 * 4 2 1 34 34 H 1.09003 * 109.49609 * 54.61418 * 4 2 1 35 35 H 1.08999 * 109.46019 * 58.66208 * 5 4 2 36 36 H 1.09001 * 109.45944 * 178.61823 * 5 4 2 37 37 H 0.97002 * 120.00009 * 24.99517 * 8 6 5 38 38 H 1.08997 * 109.47432 * 60.00438 * 16 15 14 39 39 H 1.09004 * 109.46477 * 180.02562 * 16 15 14 40 40 H 1.09003 * 109.47341 * 299.99944 * 16 15 14 41 41 H 1.08993 * 109.47193 * 59.99762 * 17 15 14 42 42 H 1.09003 * 109.47219 * 180.02562 * 17 15 14 43 43 H 1.09005 * 109.47132 * 299.99558 * 17 15 14 44 44 H 1.09003 * 109.47180 * 59.99997 * 18 15 14 45 45 H 1.08998 * 109.46960 * 179.97438 * 18 15 14 46 46 H 1.08993 * 109.46969 * 299.99920 * 18 15 14 47 47 H 1.09001 * 109.58962 * 65.15353 * 20 6 5 48 48 H 1.09005 * 109.59137 * 185.43311 * 20 6 5 49 49 H 0.97003 * 119.99830 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5678 -0.8432 1.1729 6 6 3.9604 -1.6607 -0.0599 7 1 5.0449 -1.7628 -0.0984 8 7 3.3466 -2.9887 0.0183 9 6 3.9061 -4.0289 -0.6310 10 8 4.9195 -3.8651 -1.2816 11 6 3.2864 -5.3705 -0.5516 12 7 2.1745 -5.7016 0.1228 13 7 1.9747 -6.9621 -0.0644 14 7 2.9076 -7.4263 -0.8201 15 6 3.0272 -8.8187 -1.2598 16 6 1.8713 -9.6373 -0.6810 17 6 2.9784 -8.8770 -2.7878 18 6 4.3566 -9.3959 -0.7695 19 7 3.7163 -6.4736 -1.1346 20 6 3.4686 -0.9436 -1.3210 21 7 2.0226 -0.6980 -1.1954 22 6 1.1535 -1.1129 -2.1688 23 1 0.1361 -1.3680 -1.9113 24 6 1.5800 -1.2055 -3.4866 25 7 0.9062 -1.9397 -4.3463 26 14 3.1103 -0.2880 -4.0396 27 1 4.2941 -1.1748 -3.9071 28 1 2.9557 0.1226 -5.4582 29 1 3.2978 0.9175 -3.1928 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1653 2.1371 34 1 1.6050 -1.7245 1.2922 35 1 4.0045 0.1530 1.1022 36 1 3.9381 -1.3389 2.0703 37 1 2.5376 -3.1193 0.5373 38 1 0.9242 -9.2261 -1.0302 39 1 1.9606 -10.6734 -1.0077 40 1 1.9061 -9.5958 0.4077 41 1 3.8017 -8.2938 -3.2001 42 1 3.0669 -9.9130 -3.1149 43 1 2.0312 -8.4659 -3.1371 44 1 4.3914 -9.3544 0.3192 45 1 4.4454 -10.4320 -1.0963 46 1 5.1800 -8.8127 -1.1818 47 1 3.9920 0.0064 -1.4288 48 1 3.6600 -1.5672 -2.1942 49 1 1.2041 -2.0041 -5.2672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071519306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:11 Heat of formation + Delta-G solvation = 90.451853 kcal Electronic energy + Delta-G solvation = -30997.821208 eV Core-core repulsion = 26997.989695 eV Total energy + Delta-G solvation = -3999.831513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.59559 -41.23192 -39.41527 -38.61304 -36.02232 -34.73468 -34.50746 -33.73395 -32.56383 -32.17990 -28.67475 -28.56467 -28.11055 -26.95987 -26.09216 -25.61440 -24.35170 -22.62493 -22.05815 -21.71455 -20.53905 -19.34659 -18.55918 -18.44578 -17.82738 -17.31740 -16.95919 -16.36400 -16.22561 -15.50690 -15.36428 -15.29049 -15.20119 -15.12105 -15.01042 -14.49140 -14.30131 -14.08071 -13.87586 -13.50906 -13.44638 -13.30314 -13.25907 -13.24129 -12.87928 -12.66255 -12.64126 -12.52036 -12.37828 -12.36600 -12.16079 -12.13943 -12.11297 -11.80464 -11.66099 -11.57587 -11.47140 -11.36734 -11.13098 -10.73122 -10.19476 -8.81358 -8.14352 -5.43713 -0.16508 0.26187 0.65797 1.29484 1.32713 1.41249 1.68454 1.97284 2.42414 2.81603 2.95899 3.06090 3.33363 3.46238 3.54994 3.62408 3.85469 3.98253 4.02076 4.13395 4.27888 4.29577 4.39402 4.49465 4.51493 4.55465 4.57012 4.59339 4.67884 4.70205 4.70894 4.79457 4.86164 4.95210 4.99127 5.03601 5.08174 5.11800 5.17129 5.20092 5.20320 5.28371 5.40013 5.53594 5.65869 5.92749 6.20140 6.26794 6.87885 6.95846 7.04059 7.68244 8.08284 9.05293 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.003916 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.174062 B = 7149.296057 C = 7792.039487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.159 3.841 3 H 0.045 0.955 4 C -0.126 4.126 5 C -0.109 4.109 6 C 0.129 3.871 7 H 0.092 0.908 8 N -0.667 5.667 9 C 0.612 3.388 10 O -0.554 6.554 11 C 0.115 3.885 12 N -0.266 5.266 13 N -0.058 5.058 14 N -0.110 5.110 15 C 0.157 3.843 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.153 4.153 19 N -0.262 5.262 20 C 0.108 3.892 21 N -0.610 5.610 22 C -0.218 4.218 23 H 0.066 0.934 24 C -0.037 4.037 25 N -0.961 5.961 26 Si 0.929 3.071 27 H -0.298 1.298 28 H -0.316 1.316 29 H -0.249 1.249 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.414 0.586 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.135 0.865 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.132 0.868 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.036 0.964 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -13.542 14.273 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 H 0.063 0.937 4 C -0.165 4.165 5 C -0.147 4.147 6 C 0.024 3.976 7 H 0.110 0.890 8 N -0.319 5.319 9 C 0.392 3.608 10 O -0.430 6.430 11 C -0.169 4.169 12 N -0.140 5.140 13 N -0.050 5.050 14 N -0.027 5.027 15 C 0.079 3.921 16 C -0.206 4.206 17 C -0.219 4.219 18 C -0.212 4.212 19 N -0.116 5.116 20 C -0.018 4.018 21 N -0.335 5.335 22 C -0.348 4.348 23 H 0.084 0.916 24 C -0.230 4.230 25 N -0.608 5.608 26 Si 0.760 3.240 27 H -0.226 1.226 28 H -0.245 1.245 29 H -0.173 1.173 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.252 0.748 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.153 0.847 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.151 0.849 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.054 0.946 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.535 -13.859 13.866 20.371 hybrid contribution 0.441 0.743 -1.414 1.657 sum 5.976 -13.116 12.452 19.048 Atomic orbital electron populations 1.21751 0.95125 1.00887 1.01080 1.20848 0.93937 0.94107 0.85640 0.93740 1.22017 0.95134 1.00977 0.98403 1.21726 0.96926 1.00631 0.95369 1.21680 0.97582 0.80744 0.97584 0.89027 1.45587 1.29446 1.07401 1.49418 1.16310 0.83172 0.81431 0.79853 1.90774 1.25883 1.84194 1.42124 1.25202 0.95102 0.96392 1.00159 1.76068 1.13627 1.04085 1.20256 1.78728 1.12744 1.03922 1.09607 1.51327 1.12151 1.11726 1.27456 1.22270 1.02078 0.70009 0.97778 1.22179 0.94760 1.01194 1.02470 1.22331 1.02778 1.06680 0.90081 1.22289 0.92394 1.04169 1.02314 1.74908 1.19484 0.96548 1.20659 1.21819 0.85594 0.97427 0.96979 1.44605 1.01441 1.66369 1.21057 1.18823 0.95029 1.34788 0.86200 0.91604 1.25819 1.00089 1.00559 0.96580 1.69943 1.43699 1.42524 1.04665 0.86162 0.80929 0.80779 0.76140 1.22612 1.24507 1.17304 0.89965 0.94572 0.94319 0.88108 0.92813 0.88552 0.88904 0.74761 0.91751 0.85089 0.90634 0.92290 0.84672 0.92840 0.91436 0.84944 0.92055 0.93506 0.94570 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 7.95 71.98 0.57 -3.92 16 2 C 0.16 5.52 3.49 44.98 0.16 5.68 16 3 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.13 -3.29 5.21 30.67 0.16 -3.13 16 5 C -0.11 -2.66 5.59 30.62 0.17 -2.49 16 6 C 0.13 4.48 2.81 45.07 0.13 4.60 16 7 H 0.09 3.09 7.58 -2.39 -0.02 3.08 16 8 N -0.67 -24.90 4.92 -444.89 -2.19 -27.09 16 9 C 0.61 26.15 7.80 86.83 0.68 26.82 16 10 O -0.55 -26.78 16.76 -3.82 -0.06 -26.84 16 11 C 0.12 4.63 8.14 137.15 1.12 5.75 16 12 N -0.27 -10.00 12.26 -52.37 -0.64 -10.64 16 13 N -0.06 -1.89 12.21 37.02 0.45 -1.44 16 14 N -0.11 -3.25 3.72 -152.24 -0.57 -3.82 16 15 C 0.16 2.83 1.30 3.60 0.00 2.84 16 16 C -0.15 -1.81 7.90 71.98 0.57 -1.24 16 17 C -0.16 -2.74 8.66 71.98 0.62 -2.12 16 18 C -0.15 -2.00 8.67 71.98 0.62 -1.37 16 19 N -0.26 -9.70 11.85 -52.32 -0.62 -10.32 16 20 C 0.11 4.74 3.81 86.31 0.33 5.07 16 21 N -0.61 -27.74 2.68 -674.52 -1.81 -29.55 16 22 C -0.22 -12.29 9.05 84.03 0.76 -11.53 16 23 H 0.07 3.99 6.38 -2.91 -0.02 3.97 16 24 C -0.04 -2.24 5.25 84.86 0.45 -1.80 16 25 N -0.96 -63.48 13.97 21.65 0.30 -63.17 16 26 Si 0.93 50.14 24.35 68.60 1.67 51.81 16 27 H -0.30 -16.55 6.62 99.48 0.66 -15.89 16 28 H -0.32 -17.36 7.11 99.48 0.71 -16.65 16 29 H -0.25 -12.35 6.62 99.48 0.66 -11.70 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.41 7.64 -2.39 -0.02 1.39 16 32 H 0.04 1.45 7.42 -2.39 -0.02 1.43 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.52 6.40 -2.39 -0.02 1.50 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.41 14.46 6.52 -92.71 -0.60 13.86 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.05 1.95 7.04 -2.39 -0.02 1.94 16 48 H 0.04 1.93 4.62 -2.38 -0.01 1.92 16 49 H 0.25 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -83.09 384.58 3.13 -79.95 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.26 Total: 17.95 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.33 Total: 23.15 kcal Atomic # 7 Polarization: -140.95 SS G_CDS: -5.07 Total: -146.02 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.06 Total: -26.84 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 1.67 Total: 51.81 kcal Total: -83.09 3.13 -79.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071519306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.403 kcal (2) G-P(sol) polarization free energy of solvation -83.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds