Wall clock time and date at job start Tue Mar 31 2020 21:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46943 * 2 1 4 4 C 1.50711 * 109.46795 * 119.99319 * 2 1 3 5 5 N 1.31062 * 126.66051 * 300.02550 * 4 2 1 6 6 N 1.28847 * 107.99298 * 179.97438 * 5 4 2 7 7 N 1.28744 * 109.39227 * 0.02562 * 6 5 4 8 8 N 1.29022 * 108.80756 * 359.97438 * 7 6 5 9 9 C 1.46500 * 126.43404 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46908 * 90.02926 * 9 8 7 11 11 O 1.21277 * 120.00433 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99832 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99851 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.49907 * 35.06413 * 13 12 10 15 15 C 1.53045 * 109.49793 * 155.15601 * 13 12 10 16 16 C 1.53047 * 109.53595 * 58.58812 * 15 13 12 17 17 C 1.53188 * 109.31443 * 61.36122 * 16 15 13 18 18 H 1.09008 * 109.70137 * 65.22257 * 17 16 15 19 19 C 1.52996 * 109.58719 * 185.57792 * 17 16 15 20 20 N 1.46928 * 108.77804 * 305.37101 * 17 16 15 21 21 C 1.36944 * 120.62441 * 233.63045 * 20 17 16 22 22 H 1.07992 * 120.00330 * 29.00233 * 21 20 17 23 23 C 1.38816 * 119.99276 * 209.00005 * 21 20 17 24 24 N 1.31619 * 119.99950 * 15.02521 * 23 21 20 25 25 Si 1.86799 * 119.99607 * 195.01671 * 23 21 20 26 26 H 1.48502 * 109.46848 * 90.00572 * 25 23 21 27 27 H 1.48497 * 109.47204 * 209.99909 * 25 23 21 28 28 H 1.48503 * 109.47455 * 330.00807 * 25 23 21 29 29 C 1.46919 * 118.74181 * 53.60241 * 20 17 16 30 30 H 1.08996 * 109.47716 * 300.00384 * 1 2 3 31 31 H 1.09003 * 109.47299 * 60.00530 * 1 2 3 32 32 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47716 * 239.99616 * 2 1 3 34 34 H 1.08997 * 109.46518 * 299.99173 * 3 2 1 35 35 H 1.08996 * 109.47037 * 59.99835 * 3 2 1 36 36 H 1.08998 * 109.46803 * 179.97438 * 3 2 1 37 37 H 1.08996 * 109.47024 * 210.02317 * 9 8 7 38 38 H 1.09000 * 109.47350 * 330.02849 * 9 8 7 39 39 H 0.97000 * 119.99832 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.45890 * 178.60246 * 15 13 12 41 41 H 1.08996 * 109.46034 * 298.56392 * 15 13 12 42 42 H 1.08999 * 109.49519 * 301.41166 * 16 15 13 43 43 H 1.08993 * 109.49610 * 181.31747 * 16 15 13 44 44 H 1.09005 * 109.46874 * 179.29280 * 19 17 16 45 45 H 1.08997 * 109.47128 * 299.29105 * 19 17 16 46 46 H 1.09000 * 109.46970 * 59.29272 * 19 17 16 47 47 H 0.97005 * 119.99151 * 179.97438 * 24 23 21 48 48 H 1.08999 * 109.58713 * 186.60722 * 29 20 17 49 49 H 1.09004 * 109.58554 * 66.18482 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 1.2307 5 7 1.7970 -0.3784 2.4765 6 7 2.3979 -1.2289 3.2353 7 7 3.0109 -2.0945 2.5054 8 7 2.8092 -1.8088 1.2635 9 6 3.3292 -2.5419 0.1066 10 6 2.3477 -3.6140 -0.2912 11 8 1.3158 -3.7526 0.3307 12 7 2.6173 -4.4197 -1.3375 13 6 1.6634 -5.4624 -1.7239 14 1 0.6471 -5.1059 -1.5563 15 6 1.8489 -5.8010 -3.2048 16 6 3.2855 -6.2700 -3.4466 17 6 3.5506 -7.5350 -2.6245 18 1 2.9213 -8.3478 -2.9874 19 6 5.0231 -7.9304 -2.7520 20 7 3.2349 -7.2588 -1.2164 21 6 4.1581 -7.5000 -0.2341 22 1 5.2129 -7.4375 -0.4573 23 6 3.7380 -7.8249 1.0484 24 7 2.4914 -8.1903 1.2598 25 14 4.9421 -7.7437 2.4742 26 1 4.9073 -6.3859 3.0747 27 1 4.5632 -8.7483 3.5000 28 1 6.3131 -8.0319 1.9815 29 6 1.9102 -6.7184 -0.8823 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9562 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 3.1299 1.4425 0.0005 37 1 3.4718 -1.8529 -0.7259 38 1 4.2833 -3.0008 0.3660 39 1 3.4428 -4.3092 -1.8347 40 1 1.1559 -6.5941 -3.4855 41 1 1.6498 -4.9149 -3.8076 42 1 3.9799 -5.4866 -3.1430 43 1 3.4234 -6.4886 -4.5055 44 1 5.2124 -8.8234 -2.1563 45 1 5.2552 -8.1349 -3.7971 46 1 5.6507 -7.1145 -2.3933 47 1 2.1980 -8.4177 2.1560 48 1 1.8769 -6.4611 0.1764 49 1 1.1454 -7.4628 -1.1038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:17 Heat of formation + Delta-G solvation = 97.026683 kcal Electronic energy + Delta-G solvation = -31162.710512 eV Core-core repulsion = 27163.164105 eV Total energy + Delta-G solvation = -3999.546407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.07030 -39.83892 -37.87375 -36.28510 -35.26685 -34.32695 -32.85769 -31.53840 -31.03953 -29.99721 -28.77651 -27.46030 -26.25739 -25.05826 -24.39786 -23.38933 -22.27907 -21.38603 -20.63661 -20.45559 -18.92940 -17.93883 -17.63839 -16.45370 -16.16663 -15.80362 -15.42376 -15.40256 -14.83688 -14.55923 -14.11144 -14.02109 -13.59875 -13.47972 -13.46277 -13.24397 -13.04342 -12.68290 -12.58339 -12.45395 -12.14130 -11.91597 -11.81804 -11.58199 -11.38219 -11.36833 -11.25675 -11.19515 -11.04038 -10.97965 -10.90396 -10.74423 -10.47123 -10.40124 -10.02826 -9.96001 -9.73088 -9.58138 -9.53817 -8.64910 -8.50405 -6.68663 -5.80525 -3.25977 1.30694 1.91059 2.38708 2.66032 3.32546 3.38576 3.43468 3.48863 3.80781 4.13418 4.35246 4.46480 4.63976 4.72813 4.74971 4.87435 5.06925 5.19763 5.24064 5.29717 5.35073 5.39230 5.43929 5.49239 5.50471 5.60722 5.63978 5.83141 5.87173 5.92979 5.97544 6.02224 6.04662 6.16335 6.20770 6.24969 6.31407 6.37362 6.47604 6.51528 6.70756 6.95418 7.00801 7.23512 7.56062 7.73224 7.79098 8.35732 8.42791 8.75576 9.17326 9.81679 10.36791 11.27245 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.004314 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.225971 B = 6488.280934 C = 7960.397686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.009 4.009 3 C -0.143 4.143 4 C 0.195 3.805 5 N -0.304 5.304 6 N -0.079 5.079 7 N -0.076 5.076 8 N -0.288 5.288 9 C 0.090 3.910 10 C 0.501 3.499 11 O -0.524 6.524 12 N -0.689 5.689 13 C 0.120 3.880 14 H 0.077 0.923 15 C -0.118 4.118 16 C -0.130 4.130 17 C 0.164 3.836 18 H 0.025 0.975 19 C -0.135 4.135 20 N -0.583 5.583 21 C -0.258 4.258 22 H 0.069 0.931 23 C 0.010 3.990 24 N -0.897 5.897 25 Si 0.893 3.107 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.161 3.839 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.398 0.602 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.037 0.963 46 H 0.051 0.949 47 H 0.254 0.746 48 H 0.098 0.902 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 14.983 -12.645 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.083 4.083 5 N -0.152 5.152 6 N -0.072 5.072 7 N -0.061 5.061 8 N -0.088 5.088 9 C -0.036 4.036 10 C 0.283 3.717 11 O -0.400 6.400 12 N -0.340 5.340 13 C 0.014 3.986 14 H 0.095 0.905 15 C -0.156 4.156 16 C -0.169 4.169 17 C 0.058 3.942 18 H 0.042 0.958 19 C -0.193 4.193 20 N -0.306 5.306 21 C -0.387 4.387 22 H 0.087 0.913 23 C -0.190 4.190 24 N -0.541 5.541 25 Si 0.723 3.277 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.205 1.205 29 C 0.034 3.966 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.233 0.767 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.116 0.884 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.184 14.608 -10.589 18.043 hybrid contribution 1.052 -0.296 -0.348 1.147 sum 1.236 14.312 -10.937 18.055 Atomic orbital electron populations 1.21819 0.91857 1.03364 1.03138 1.19743 0.97798 0.95813 0.89683 1.21845 1.01168 0.93578 1.03518 1.25991 0.95226 0.89160 0.97903 1.74885 1.19927 1.22088 0.98343 1.78603 1.07223 0.98946 1.22470 1.79004 1.19817 1.20074 0.87228 1.47861 1.34314 1.19728 1.06943 1.22046 1.00001 0.95715 0.85868 1.20002 0.87237 0.82911 0.81575 1.90801 1.26398 1.71009 1.51782 1.45716 1.23796 1.33270 1.31201 1.21873 0.91631 0.90094 0.94967 0.90519 1.21695 0.98263 1.00580 0.95072 1.22067 0.95684 0.99924 0.99262 1.20468 0.94460 0.92803 0.86513 0.95773 1.21793 0.96592 1.02019 0.98894 1.44054 1.13279 1.72961 1.00319 1.19070 0.88583 1.42062 0.88977 0.91309 1.25065 0.96259 0.98808 0.98865 1.69966 1.15970 1.47256 1.20886 0.86443 0.80524 0.77863 0.82869 1.21079 1.21701 1.20498 1.21195 0.86535 0.89031 0.99857 0.91135 0.91094 0.91741 0.89246 0.90942 0.90986 0.92439 0.84913 0.83940 0.76704 0.90920 0.92935 0.92718 0.92736 0.92001 0.94425 0.92991 0.93539 0.88408 0.95572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.17 37.15 0.34 -1.03 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 4 C 0.20 2.77 6.64 -155.44 -1.03 1.74 16 5 N -0.30 -5.18 12.36 32.70 0.40 -4.78 16 6 N -0.08 -1.54 13.43 60.35 0.81 -0.73 16 7 N -0.08 -1.46 13.29 60.35 0.80 -0.65 16 8 N -0.29 -4.44 2.83 -59.44 -0.17 -4.61 16 9 C 0.09 1.06 6.57 -5.19 -0.03 1.03 16 10 C 0.50 7.96 7.86 -10.98 -0.09 7.87 16 11 O -0.52 -10.93 16.09 5.56 0.09 -10.84 16 12 N -0.69 -10.07 4.92 -53.69 -0.26 -10.33 16 13 C 0.12 2.01 2.81 -67.81 -0.19 1.82 16 14 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 15 C -0.12 -1.60 5.59 -26.68 -0.15 -1.75 16 16 C -0.13 -1.78 5.21 -26.61 -0.14 -1.92 16 17 C 0.16 2.96 3.50 -67.60 -0.24 2.73 16 18 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 19 C -0.14 -2.26 7.94 37.16 0.30 -1.96 16 20 N -0.58 -12.93 2.91 -164.78 -0.48 -13.41 16 21 C -0.26 -6.47 8.60 -15.05 -0.13 -6.60 16 22 H 0.07 1.68 6.21 -52.49 -0.33 1.36 16 23 C 0.01 0.26 4.96 -17.43 -0.09 0.18 16 24 N -0.90 -26.05 11.14 55.49 0.62 -25.43 16 25 Si 0.89 21.88 29.58 -169.99 -5.03 16.85 16 26 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C 0.16 3.59 4.89 -3.71 -0.02 3.58 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.65 6.85 -51.93 -0.36 0.30 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.13 0.84 7.13 -51.93 -0.37 0.47 16 38 H 0.14 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.40 4.75 6.77 -40.82 -0.28 4.48 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.70 6.40 -51.93 -0.33 0.37 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 1.17 7.62 -51.93 -0.40 0.77 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.86 7.44 -51.93 -0.39 0.47 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.10 2.65 6.06 -51.93 -0.31 2.34 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -34.97 390.26 -6.54 -41.51 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.78 Total: 1.94 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.42 Total: 4.60 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 1.72 Total: -59.94 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.97 -6.54 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.539 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds