Wall clock time and date at job start Tue Mar 31 2020 21:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46943 * 2 1 4 4 C 1.50711 * 109.46795 * 119.99319 * 2 1 3 5 5 N 1.31062 * 126.66051 * 300.02550 * 4 2 1 6 6 N 1.28847 * 107.99298 * 179.97438 * 5 4 2 7 7 N 1.28744 * 109.39227 * 0.02562 * 6 5 4 8 8 N 1.29022 * 108.80756 * 359.97438 * 7 6 5 9 9 C 1.46500 * 126.43404 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46908 * 90.02926 * 9 8 7 11 11 O 1.21277 * 120.00433 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99832 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99851 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.49907 * 35.06413 * 13 12 10 15 15 C 1.53045 * 109.49793 * 155.15601 * 13 12 10 16 16 C 1.53047 * 109.53595 * 58.58812 * 15 13 12 17 17 C 1.53188 * 109.31443 * 61.36122 * 16 15 13 18 18 H 1.09008 * 109.70137 * 65.22257 * 17 16 15 19 19 C 1.52996 * 109.58719 * 185.57792 * 17 16 15 20 20 N 1.46928 * 108.77804 * 305.37101 * 17 16 15 21 21 C 1.36944 * 120.62441 * 233.63045 * 20 17 16 22 22 H 1.07992 * 120.00330 * 29.00233 * 21 20 17 23 23 C 1.38816 * 119.99276 * 209.00005 * 21 20 17 24 24 N 1.31619 * 119.99950 * 15.02521 * 23 21 20 25 25 Si 1.86799 * 119.99607 * 195.01671 * 23 21 20 26 26 H 1.48502 * 109.46848 * 90.00572 * 25 23 21 27 27 H 1.48497 * 109.47204 * 209.99909 * 25 23 21 28 28 H 1.48503 * 109.47455 * 330.00807 * 25 23 21 29 29 C 1.46919 * 118.74181 * 53.60241 * 20 17 16 30 30 H 1.08996 * 109.47716 * 300.00384 * 1 2 3 31 31 H 1.09003 * 109.47299 * 60.00530 * 1 2 3 32 32 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47716 * 239.99616 * 2 1 3 34 34 H 1.08997 * 109.46518 * 299.99173 * 3 2 1 35 35 H 1.08996 * 109.47037 * 59.99835 * 3 2 1 36 36 H 1.08998 * 109.46803 * 179.97438 * 3 2 1 37 37 H 1.08996 * 109.47024 * 210.02317 * 9 8 7 38 38 H 1.09000 * 109.47350 * 330.02849 * 9 8 7 39 39 H 0.97000 * 119.99832 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.45890 * 178.60246 * 15 13 12 41 41 H 1.08996 * 109.46034 * 298.56392 * 15 13 12 42 42 H 1.08999 * 109.49519 * 301.41166 * 16 15 13 43 43 H 1.08993 * 109.49610 * 181.31747 * 16 15 13 44 44 H 1.09005 * 109.46874 * 179.29280 * 19 17 16 45 45 H 1.08997 * 109.47128 * 299.29105 * 19 17 16 46 46 H 1.09000 * 109.46970 * 59.29272 * 19 17 16 47 47 H 0.97005 * 119.99151 * 179.97438 * 24 23 21 48 48 H 1.08999 * 109.58713 * 186.60722 * 29 20 17 49 49 H 1.09004 * 109.58554 * 66.18482 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 1.2307 5 7 1.7970 -0.3784 2.4765 6 7 2.3979 -1.2289 3.2353 7 7 3.0109 -2.0945 2.5054 8 7 2.8092 -1.8088 1.2635 9 6 3.3292 -2.5419 0.1066 10 6 2.3477 -3.6140 -0.2912 11 8 1.3158 -3.7526 0.3307 12 7 2.6173 -4.4197 -1.3375 13 6 1.6634 -5.4624 -1.7239 14 1 0.6471 -5.1059 -1.5563 15 6 1.8489 -5.8010 -3.2048 16 6 3.2855 -6.2700 -3.4466 17 6 3.5506 -7.5350 -2.6245 18 1 2.9213 -8.3478 -2.9874 19 6 5.0231 -7.9304 -2.7520 20 7 3.2349 -7.2588 -1.2164 21 6 4.1581 -7.5000 -0.2341 22 1 5.2129 -7.4375 -0.4573 23 6 3.7380 -7.8249 1.0484 24 7 2.4914 -8.1903 1.2598 25 14 4.9421 -7.7437 2.4742 26 1 4.9073 -6.3859 3.0747 27 1 4.5632 -8.7483 3.5000 28 1 6.3131 -8.0319 1.9815 29 6 1.9102 -6.7184 -0.8823 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9562 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 3.1299 1.4425 0.0005 37 1 3.4718 -1.8529 -0.7259 38 1 4.2833 -3.0008 0.3660 39 1 3.4428 -4.3092 -1.8347 40 1 1.1559 -6.5941 -3.4855 41 1 1.6498 -4.9149 -3.8076 42 1 3.9799 -5.4866 -3.1430 43 1 3.4234 -6.4886 -4.5055 44 1 5.2124 -8.8234 -2.1563 45 1 5.2552 -8.1349 -3.7971 46 1 5.6507 -7.1145 -2.3933 47 1 2.1980 -8.4177 2.1560 48 1 1.8769 -6.4611 0.1764 49 1 1.1454 -7.4628 -1.1038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:16 Heat of formation + Delta-G solvation = 71.283676 kcal Electronic energy + Delta-G solvation = -31163.826812 eV Core-core repulsion = 27163.164105 eV Total energy + Delta-G solvation = -4000.662707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -45.30357 -41.17452 -39.31860 -37.16192 -36.45630 -35.83995 -34.54165 -32.77141 -32.31034 -31.74123 -29.92484 -28.09932 -27.80997 -26.72933 -25.47074 -24.65872 -23.86885 -22.55694 -21.99879 -21.52201 -20.42530 -19.15350 -18.78830 -18.15870 -17.49210 -17.11708 -16.76777 -16.62227 -16.10992 -15.78599 -15.50288 -15.46352 -15.00029 -14.84930 -14.53464 -14.37055 -14.18717 -14.02970 -13.78170 -13.64818 -13.18693 -13.08160 -13.02772 -12.85801 -12.71197 -12.65676 -12.55653 -12.46828 -12.39788 -12.29429 -12.27560 -12.11523 -12.05978 -11.89135 -11.55048 -11.25181 -11.17745 -11.03991 -10.90872 -10.54898 -10.05709 -8.59577 -7.84697 -5.29336 0.10272 0.86061 1.12128 1.37981 1.42325 1.44138 1.48773 2.16750 2.48103 2.88663 3.16185 3.32907 3.50977 3.61621 3.63126 3.88635 4.03003 4.04289 4.06548 4.12105 4.18657 4.21791 4.37851 4.50214 4.64476 4.66140 4.75559 4.78686 4.84206 4.84762 4.92040 4.95404 4.98076 5.05803 5.07838 5.15709 5.17299 5.29345 5.30929 5.35751 5.37229 5.59623 5.61321 5.65297 5.72954 5.75354 6.42053 6.50671 7.17439 7.19460 7.47320 7.92860 8.41906 9.19956 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.004314 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.225971 B = 6488.280934 C = 7960.397686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.010 4.010 3 C -0.137 4.137 4 C 0.209 3.791 5 N -0.328 5.328 6 N -0.110 5.110 7 N -0.115 5.115 8 N -0.289 5.289 9 C 0.088 3.912 10 C 0.496 3.504 11 O -0.582 6.582 12 N -0.674 5.674 13 C 0.133 3.867 14 H 0.065 0.935 15 C -0.109 4.109 16 C -0.118 4.118 17 C 0.152 3.848 18 H 0.008 0.992 19 C -0.130 4.130 20 N -0.594 5.594 21 C -0.230 4.230 22 H 0.083 0.917 23 C -0.053 4.053 24 N -0.938 5.938 25 Si 0.941 3.059 26 H -0.299 1.299 27 H -0.307 1.307 28 H -0.255 1.255 29 C 0.169 3.831 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.034 0.966 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.201 0.799 38 H 0.156 0.844 39 H 0.416 0.584 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.030 0.970 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.239 0.761 48 H 0.044 0.956 49 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 17.573 -17.530 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 C -0.195 4.195 4 C -0.069 4.069 5 N -0.177 5.177 6 N -0.103 5.103 7 N -0.101 5.101 8 N -0.090 5.090 9 C -0.035 4.035 10 C 0.281 3.719 11 O -0.462 6.462 12 N -0.326 5.326 13 C 0.027 3.973 14 H 0.083 0.917 15 C -0.147 4.147 16 C -0.157 4.157 17 C 0.047 3.953 18 H 0.026 0.974 19 C -0.187 4.187 20 N -0.318 5.318 21 C -0.361 4.361 22 H 0.101 0.899 23 C -0.248 4.248 24 N -0.586 5.586 25 Si 0.771 3.229 26 H -0.227 1.227 27 H -0.235 1.235 28 H -0.179 1.179 29 C 0.042 3.958 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.053 0.947 33 H 0.142 0.858 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.218 0.782 38 H 0.174 0.826 39 H 0.255 0.745 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.048 0.952 48 H 0.063 0.937 49 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 2.448 17.203 -15.551 23.319 hybrid contribution 0.324 -1.151 1.039 1.584 sum 2.772 16.052 -14.513 21.817 Atomic orbital electron populations 1.21820 0.92133 1.01730 1.04259 1.20174 0.97444 0.97107 0.88413 1.21849 1.01636 0.91772 1.04285 1.26946 0.93233 0.88238 0.98515 1.74796 1.20664 1.22488 0.99799 1.78547 1.08226 0.99795 1.23769 1.78902 1.21172 1.20901 0.89128 1.48092 1.34299 1.20015 1.06554 1.22488 0.98422 0.95996 0.86643 1.20716 0.87048 0.83426 0.80748 1.90796 1.29207 1.72673 1.53503 1.45529 1.24057 1.32013 1.31028 1.21463 0.91761 0.87674 0.96451 0.91699 1.21670 0.98370 1.02301 0.92320 1.21954 0.95840 0.97573 1.00294 1.20810 0.95239 0.95027 0.84248 0.97447 1.21737 0.95385 1.00716 1.00856 1.44290 1.12428 1.73122 1.01932 1.19456 0.89687 1.37842 0.89077 0.89933 1.25677 0.97160 1.00701 1.01236 1.70152 1.17837 1.50694 1.19881 0.85647 0.80348 0.76301 0.80568 1.22702 1.23500 1.17909 1.20863 0.86031 0.90944 0.98008 0.92591 0.87454 0.94658 0.85841 0.87707 0.92707 0.91669 0.78189 0.82636 0.74540 0.91441 0.88625 0.90795 0.89116 0.95107 0.90651 0.92396 0.95210 0.93733 0.99181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.17 71.98 0.66 -1.77 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.19 16 3 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 4 C 0.21 5.68 6.64 138.14 0.92 6.60 16 5 N -0.33 -11.43 12.36 -50.45 -0.62 -12.06 16 6 N -0.11 -4.45 13.43 37.01 0.50 -3.96 16 7 N -0.12 -4.53 13.29 37.02 0.49 -4.04 16 8 N -0.29 -8.63 2.83 -341.98 -0.97 -9.60 16 9 C 0.09 1.82 6.57 85.63 0.56 2.38 16 10 C 0.50 15.05 7.86 87.66 0.69 15.74 16 11 O -0.58 -24.89 16.09 -3.02 -0.05 -24.94 16 12 N -0.67 -17.87 4.92 -442.16 -2.17 -20.04 16 13 C 0.13 4.31 2.81 45.07 0.13 4.44 16 14 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 15 C -0.11 -2.50 5.59 30.63 0.17 -2.33 16 16 C -0.12 -2.61 5.21 30.67 0.16 -2.45 16 17 C 0.15 5.10 3.50 44.97 0.16 5.25 16 18 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 19 C -0.13 -3.88 7.94 71.98 0.57 -3.30 16 20 N -0.59 -26.21 2.91 -675.24 -1.96 -28.17 16 21 C -0.23 -11.54 8.60 84.03 0.72 -10.82 16 22 H 0.08 3.89 6.21 -2.91 -0.02 3.88 16 23 C -0.05 -2.97 4.96 84.86 0.42 -2.55 16 24 N -0.94 -57.99 11.14 21.65 0.24 -57.75 16 25 Si 0.94 46.50 29.58 68.60 2.03 48.52 16 26 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 27 H -0.31 -15.89 7.11 99.48 0.71 -15.19 16 28 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 29 C 0.17 7.82 4.89 86.36 0.42 8.24 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.12 1.11 6.85 -2.39 -0.02 1.09 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.20 1.28 7.13 -2.39 -0.02 1.26 16 38 H 0.16 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.42 7.87 6.77 -92.71 -0.63 7.25 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.40 6.40 -2.39 -0.02 1.39 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.03 1.09 7.62 -2.38 -0.02 1.07 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.06 1.66 7.44 -2.39 -0.02 1.64 16 47 H 0.24 14.92 8.31 -92.70 -0.77 14.15 16 48 H 0.04 2.57 6.06 -2.39 -0.01 2.55 16 49 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 Total: -1.00 -87.84 390.26 4.02 -83.82 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.33 Total: 9.77 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.20 Total: 18.43 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -4.50 Total: -135.61 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -87.84 4.02 -83.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.109 kcal (2) G-P(sol) polarization free energy of solvation -87.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds