Wall clock time and date at job start Tue Mar 31 2020 21:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 C 1.50697 * 109.46995 * 120.00390 * 2 1 3 5 5 N 1.31078 * 126.65905 * 300.16631 * 4 2 1 6 6 N 1.28843 * 107.98685 * 180.24424 * 5 4 2 7 7 N 1.28732 * 109.40076 * 359.75620 * 6 5 4 8 8 N 1.29015 * 108.80939 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.43819 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46971 * 90.02817 * 9 8 7 11 11 O 1.21276 * 119.99854 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99668 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99828 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.49275 * 324.92747 * 13 12 10 15 15 C 1.53036 * 109.52069 * 204.85316 * 13 12 10 16 16 C 1.53041 * 109.53554 * 301.38881 * 15 13 12 17 17 C 1.53622 * 109.24380 * 298.51477 * 16 15 13 18 18 H 1.09000 * 109.73931 * 295.11518 * 17 16 15 19 19 C 1.53004 * 109.66053 * 174.54817 * 17 16 15 20 20 N 1.46920 * 108.54182 * 54.85945 * 17 16 15 21 21 C 1.36938 * 120.63045 * 126.37020 * 20 17 16 22 22 H 1.07998 * 120.00360 * 330.59598 * 21 20 17 23 23 C 1.38812 * 119.99728 * 150.60081 * 21 20 17 24 24 N 1.31614 * 120.00430 * 345.04488 * 23 21 20 25 25 Si 1.86809 * 119.99729 * 165.32173 * 23 21 20 26 26 H 1.48493 * 109.47076 * 89.99805 * 25 23 21 27 27 H 1.48497 * 109.46789 * 210.00033 * 25 23 21 28 28 H 1.48504 * 109.46873 * 329.99555 * 25 23 21 29 29 C 1.46929 * 118.73799 * 306.08918 * 20 17 16 30 30 H 1.09004 * 109.47098 * 299.99885 * 1 2 3 31 31 H 1.09001 * 109.46982 * 60.00030 * 1 2 3 32 32 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47098 * 240.00115 * 2 1 3 34 34 H 1.09005 * 109.46835 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47061 * 299.99921 * 3 2 1 36 36 H 1.09004 * 109.46933 * 60.00014 * 3 2 1 37 37 H 1.08999 * 109.47158 * 330.02305 * 9 8 7 38 38 H 1.09000 * 109.46830 * 210.02660 * 9 8 7 39 39 H 0.96995 * 120.00226 * 359.97438 * 12 10 9 40 40 H 1.08995 * 109.46410 * 61.41364 * 15 13 12 41 41 H 1.08998 * 109.45716 * 181.38685 * 15 13 12 42 42 H 1.09006 * 109.49722 * 58.59647 * 16 15 13 43 43 H 1.09010 * 109.49458 * 178.68541 * 16 15 13 44 44 H 1.08996 * 109.47344 * 300.95238 * 19 17 16 45 45 H 1.09003 * 109.47024 * 60.95233 * 19 17 16 46 46 H 1.09000 * 109.46854 * 180.94782 * 19 17 16 47 47 H 0.96998 * 120.00114 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.58909 * 173.65261 * 29 20 17 49 49 H 1.08999 * 109.58577 * 293.93308 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7950 -0.3802 2.4765 6 7 2.4015 -1.2270 3.2349 7 7 3.0153 -2.0917 2.5051 8 7 2.8088 -1.8094 1.2632 9 6 3.3279 -2.5430 0.1062 10 6 2.3492 -3.6197 -0.2863 11 8 1.3193 -3.7601 0.3386 12 7 2.6185 -4.4265 -1.3318 13 6 1.6668 -5.4728 -1.7138 14 1 1.1925 -5.8771 -0.8195 15 6 2.4060 -6.5922 -2.4503 16 6 3.0996 -6.0192 -3.6884 17 6 2.0417 -5.4337 -4.6360 18 1 1.3983 -6.2313 -5.0074 19 6 2.7318 -4.7382 -5.8112 20 7 1.2357 -4.4575 -3.8903 21 6 1.0777 -3.1803 -4.3584 22 1 1.8530 -2.7245 -4.9564 23 6 -0.0789 -2.4714 -4.0643 24 7 -1.1367 -3.1016 -3.5994 25 14 -0.1366 -0.6241 -4.3356 26 1 -0.6105 -0.3408 -5.7140 27 1 -1.0675 -0.0088 -3.3558 28 1 1.2225 -0.0542 -4.1524 29 6 0.5973 -4.8794 -2.6361 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 4.2845 -2.9977 0.3635 38 1 3.4653 -1.8552 -0.7282 39 1 3.4419 -4.3139 -1.8319 40 1 3.1510 -7.0327 -1.7879 41 1 1.6933 -7.3583 -2.7556 42 1 3.7946 -5.2357 -3.3861 43 1 3.6451 -6.8125 -4.1996 44 1 3.3789 -3.9458 -5.4353 45 1 3.3291 -5.4640 -6.3630 46 1 1.9788 -4.3095 -6.4725 47 1 -1.9451 -2.6063 -3.3942 48 1 0.1355 -4.0181 -2.1533 49 1 -0.1633 -5.6308 -2.8480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:22 Heat of formation + Delta-G solvation = 95.736853 kcal Electronic energy + Delta-G solvation = -31747.693709 eV Core-core repulsion = 27748.091371 eV Total energy + Delta-G solvation = -3999.602338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.04533 -39.83604 -37.87254 -36.07260 -35.23802 -34.34287 -32.89221 -31.49492 -31.01476 -30.04107 -28.76514 -27.16149 -26.28825 -25.09371 -24.29744 -23.34122 -22.30857 -21.33614 -20.59358 -20.38417 -18.95635 -17.92463 -17.58403 -16.48194 -16.12191 -15.77353 -15.51942 -15.18030 -14.74912 -14.48531 -14.13541 -14.05169 -13.60498 -13.47362 -13.24047 -13.22222 -12.98647 -12.77466 -12.54425 -12.17214 -12.11051 -11.97038 -11.64244 -11.38976 -11.29847 -11.28958 -11.18637 -11.14493 -11.09971 -11.01358 -10.82160 -10.79817 -10.51895 -10.46315 -10.08591 -9.91490 -9.72727 -9.61226 -9.55093 -8.65687 -8.58860 -6.73333 -5.87384 -3.32521 1.32261 1.92723 2.41280 2.67298 3.23699 3.30332 3.33643 3.34449 3.96567 4.21621 4.36552 4.56365 4.64180 4.71361 4.99255 5.08613 5.17430 5.21595 5.26550 5.28504 5.37049 5.45600 5.55462 5.65843 5.73045 5.82874 5.86603 5.92049 5.95172 5.96471 6.01527 6.17797 6.19889 6.22227 6.23450 6.30977 6.36386 6.41224 6.46383 6.50057 6.69702 6.92003 6.98150 7.20506 7.52396 7.69116 7.74213 8.34654 8.37303 8.76284 9.10400 9.74711 10.31566 11.20252 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.005366 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.855421 B = 5217.262413 C = 6865.424181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.014 4.014 3 C -0.142 4.142 4 C 0.212 3.788 5 N -0.304 5.304 6 N -0.079 5.079 7 N -0.091 5.091 8 N -0.291 5.291 9 C 0.090 3.910 10 C 0.501 3.499 11 O -0.524 6.524 12 N -0.689 5.689 13 C 0.120 3.880 14 H 0.077 0.923 15 C -0.119 4.119 16 C -0.130 4.130 17 C 0.164 3.836 18 H 0.025 0.975 19 C -0.135 4.135 20 N -0.583 5.583 21 C -0.254 4.254 22 H 0.068 0.932 23 C 0.008 3.992 24 N -0.896 5.896 25 Si 0.887 3.113 26 H -0.288 1.288 27 H -0.285 1.285 28 H -0.279 1.279 29 C 0.162 3.838 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.398 0.602 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.037 0.963 46 H 0.061 0.939 47 H 0.254 0.746 48 H 0.098 0.902 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 0.536 1.070 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 C -0.200 4.200 4 C -0.066 4.066 5 N -0.153 5.153 6 N -0.073 5.073 7 N -0.077 5.077 8 N -0.091 5.091 9 C -0.036 4.036 10 C 0.283 3.717 11 O -0.400 6.400 12 N -0.340 5.340 13 C 0.014 3.986 14 H 0.095 0.905 15 C -0.157 4.157 16 C -0.169 4.169 17 C 0.057 3.943 18 H 0.043 0.957 19 C -0.193 4.193 20 N -0.306 5.306 21 C -0.384 4.384 22 H 0.086 0.914 23 C -0.191 4.191 24 N -0.539 5.539 25 Si 0.717 3.283 26 H -0.215 1.215 27 H -0.211 1.211 28 H -0.204 1.204 29 C 0.035 3.965 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.233 0.767 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.116 0.884 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 10.276 0.320 2.986 10.706 hybrid contribution 0.248 0.773 -1.494 1.700 sum 10.524 1.093 1.492 10.686 Atomic orbital electron populations 1.21812 0.91535 1.03793 1.02933 1.19831 0.98178 0.95841 0.89742 1.21842 1.00933 0.93682 1.03552 1.26079 0.94115 0.88585 0.97852 1.74927 1.19882 1.22076 0.98402 1.78532 1.07005 0.99156 1.22605 1.78803 1.20656 1.20865 0.87360 1.47816 1.34568 1.19939 1.06763 1.22042 0.99171 0.96161 0.86210 1.20006 0.87189 0.82837 0.81685 1.90802 1.25876 1.69962 1.53380 1.45711 1.23973 1.33965 1.30333 1.21865 0.91403 0.86863 0.98419 0.90531 1.21695 0.99598 0.97358 0.97040 1.22140 0.98731 0.99310 0.96748 1.20564 0.91156 0.91939 0.90606 0.95707 1.21786 0.99973 0.99481 0.98025 1.44070 1.57769 1.08306 1.20459 1.19063 0.99399 0.88889 1.31053 0.91405 1.25063 0.94917 0.98044 1.01090 1.69968 1.01896 1.34133 1.47937 0.86554 0.77532 0.86315 0.77924 1.21467 1.21126 1.20408 1.21183 0.90302 0.99642 0.85399 0.91416 0.91016 0.91398 0.88684 0.92525 0.90819 0.91088 0.84529 0.84392 0.76690 0.92910 0.90926 0.92695 0.92781 0.92980 0.94413 0.92025 0.93535 0.88417 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.18 37.16 0.34 -1.86 16 2 C -0.01 -0.20 3.26 -91.77 -0.30 -0.50 16 3 C -0.14 -1.60 9.18 37.16 0.34 -1.26 16 4 C 0.21 3.38 6.64 -155.43 -1.03 2.35 16 5 N -0.30 -5.43 12.36 32.70 0.40 -5.03 16 6 N -0.08 -1.48 13.43 60.35 0.81 -0.67 16 7 N -0.09 -1.59 13.29 60.35 0.80 -0.79 16 8 N -0.29 -4.48 2.83 -59.44 -0.17 -4.65 16 9 C 0.09 1.07 6.57 -5.19 -0.03 1.03 16 10 C 0.50 7.94 7.86 -10.98 -0.09 7.85 16 11 O -0.52 -10.91 16.09 5.56 0.09 -10.82 16 12 N -0.69 -10.03 4.92 -53.69 -0.26 -10.30 16 13 C 0.12 2.01 2.81 -67.81 -0.19 1.82 16 14 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 15 C -0.12 -1.63 5.58 -26.69 -0.15 -1.78 16 16 C -0.13 -1.77 5.23 -26.39 -0.14 -1.91 16 17 C 0.16 2.87 3.51 -67.38 -0.24 2.63 16 18 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 19 C -0.14 -2.17 7.95 37.16 0.30 -1.87 16 20 N -0.58 -12.29 2.90 -164.53 -0.48 -12.77 16 21 C -0.25 -5.98 8.59 -15.06 -0.13 -6.10 16 22 H 0.07 1.55 6.22 -52.49 -0.33 1.23 16 23 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 24 N -0.90 -24.25 11.14 55.49 0.62 -23.63 16 25 Si 0.89 19.53 29.58 -169.99 -5.03 14.51 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 29 C 0.16 3.47 4.88 -3.71 -0.02 3.45 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.09 1.30 6.84 -51.93 -0.36 0.94 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.14 1.25 7.12 -51.93 -0.37 0.88 16 39 H 0.40 4.75 6.78 -40.82 -0.28 4.47 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.70 6.41 -51.93 -0.33 0.37 16 43 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.05 0.82 7.44 -51.93 -0.39 0.43 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.11 7.62 -51.93 -0.40 0.72 16 47 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 49 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -31.60 390.31 -6.54 -38.14 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.78 Total: 6.15 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.42 Total: 3.98 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 1.72 Total: -57.84 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.60 -6.54 -38.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.875 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds