Wall clock time and date at job start Tue Mar 31 2020 21:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 C 1.50697 * 109.46995 * 120.00390 * 2 1 3 5 5 N 1.31078 * 126.65905 * 300.16631 * 4 2 1 6 6 N 1.28843 * 107.98685 * 180.24424 * 5 4 2 7 7 N 1.28732 * 109.40076 * 359.75620 * 6 5 4 8 8 N 1.29015 * 108.80939 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.43819 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46971 * 90.02817 * 9 8 7 11 11 O 1.21276 * 119.99854 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99668 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99828 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.49275 * 324.92747 * 13 12 10 15 15 C 1.53036 * 109.52069 * 204.85316 * 13 12 10 16 16 C 1.53041 * 109.53554 * 301.38881 * 15 13 12 17 17 C 1.53622 * 109.24380 * 298.51477 * 16 15 13 18 18 H 1.09000 * 109.73931 * 295.11518 * 17 16 15 19 19 C 1.53004 * 109.66053 * 174.54817 * 17 16 15 20 20 N 1.46920 * 108.54182 * 54.85945 * 17 16 15 21 21 C 1.36938 * 120.63045 * 126.37020 * 20 17 16 22 22 H 1.07998 * 120.00360 * 330.59598 * 21 20 17 23 23 C 1.38812 * 119.99728 * 150.60081 * 21 20 17 24 24 N 1.31614 * 120.00430 * 345.04488 * 23 21 20 25 25 Si 1.86809 * 119.99729 * 165.32173 * 23 21 20 26 26 H 1.48493 * 109.47076 * 89.99805 * 25 23 21 27 27 H 1.48497 * 109.46789 * 210.00033 * 25 23 21 28 28 H 1.48504 * 109.46873 * 329.99555 * 25 23 21 29 29 C 1.46929 * 118.73799 * 306.08918 * 20 17 16 30 30 H 1.09004 * 109.47098 * 299.99885 * 1 2 3 31 31 H 1.09001 * 109.46982 * 60.00030 * 1 2 3 32 32 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47098 * 240.00115 * 2 1 3 34 34 H 1.09005 * 109.46835 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47061 * 299.99921 * 3 2 1 36 36 H 1.09004 * 109.46933 * 60.00014 * 3 2 1 37 37 H 1.08999 * 109.47158 * 330.02305 * 9 8 7 38 38 H 1.09000 * 109.46830 * 210.02660 * 9 8 7 39 39 H 0.96995 * 120.00226 * 359.97438 * 12 10 9 40 40 H 1.08995 * 109.46410 * 61.41364 * 15 13 12 41 41 H 1.08998 * 109.45716 * 181.38685 * 15 13 12 42 42 H 1.09006 * 109.49722 * 58.59647 * 16 15 13 43 43 H 1.09010 * 109.49458 * 178.68541 * 16 15 13 44 44 H 1.08996 * 109.47344 * 300.95238 * 19 17 16 45 45 H 1.09003 * 109.47024 * 60.95233 * 19 17 16 46 46 H 1.09000 * 109.46854 * 180.94782 * 19 17 16 47 47 H 0.96998 * 120.00114 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.58909 * 173.65261 * 29 20 17 49 49 H 1.08999 * 109.58577 * 293.93308 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7950 -0.3802 2.4765 6 7 2.4015 -1.2270 3.2349 7 7 3.0153 -2.0917 2.5051 8 7 2.8088 -1.8094 1.2632 9 6 3.3279 -2.5430 0.1062 10 6 2.3492 -3.6197 -0.2863 11 8 1.3193 -3.7601 0.3386 12 7 2.6185 -4.4265 -1.3318 13 6 1.6668 -5.4728 -1.7138 14 1 1.1925 -5.8771 -0.8195 15 6 2.4060 -6.5922 -2.4503 16 6 3.0996 -6.0192 -3.6884 17 6 2.0417 -5.4337 -4.6360 18 1 1.3983 -6.2313 -5.0074 19 6 2.7318 -4.7382 -5.8112 20 7 1.2357 -4.4575 -3.8903 21 6 1.0777 -3.1803 -4.3584 22 1 1.8530 -2.7245 -4.9564 23 6 -0.0789 -2.4714 -4.0643 24 7 -1.1367 -3.1016 -3.5994 25 14 -0.1366 -0.6241 -4.3356 26 1 -0.6105 -0.3408 -5.7140 27 1 -1.0675 -0.0088 -3.3558 28 1 1.2225 -0.0542 -4.1524 29 6 0.5973 -4.8794 -2.6361 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 4.2845 -2.9977 0.3635 38 1 3.4653 -1.8552 -0.7282 39 1 3.4419 -4.3139 -1.8319 40 1 3.1510 -7.0327 -1.7879 41 1 1.6933 -7.3583 -2.7556 42 1 3.7946 -5.2357 -3.3861 43 1 3.6451 -6.8125 -4.1996 44 1 3.3789 -3.9458 -5.4353 45 1 3.3291 -5.4640 -6.3630 46 1 1.9788 -4.3095 -6.4725 47 1 -1.9451 -2.6063 -3.3942 48 1 0.1355 -4.0181 -2.1533 49 1 -0.1633 -5.6308 -2.8480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:21 Heat of formation + Delta-G solvation = 74.136844 kcal Electronic energy + Delta-G solvation = -31748.630356 eV Core-core repulsion = 27748.091371 eV Total energy + Delta-G solvation = -4000.538985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.31436 -41.16894 -39.29012 -37.23102 -36.47951 -35.81904 -34.48718 -32.77705 -32.31849 -31.69441 -29.92883 -28.23371 -27.78052 -26.68396 -25.52637 -24.62618 -23.83862 -22.57179 -21.98703 -21.58317 -20.41086 -19.15707 -18.78811 -18.10979 -17.46838 -17.04607 -16.96464 -16.41595 -16.16951 -15.77303 -15.57841 -15.43507 -14.98302 -14.84081 -14.55447 -14.38210 -14.29660 -14.04049 -13.84472 -13.58479 -13.25005 -13.22158 -12.93667 -12.85823 -12.73757 -12.59264 -12.47820 -12.45409 -12.40802 -12.38308 -12.33549 -12.05792 -12.02456 -11.94985 -11.54523 -11.24906 -11.16658 -11.02695 -10.90730 -10.47167 -10.05035 -8.52793 -7.75247 -5.21678 0.06422 0.82250 1.09878 1.45166 1.47786 1.51000 1.59546 2.14845 2.57677 2.80926 3.11937 3.41052 3.52655 3.56972 3.66530 3.85891 3.91555 3.97155 4.02971 4.11891 4.15659 4.20501 4.32232 4.50600 4.60457 4.62940 4.66733 4.70816 4.75711 4.81074 4.84342 4.88922 4.99039 5.04319 5.08129 5.09834 5.13054 5.16119 5.25658 5.30840 5.34882 5.59543 5.62380 5.67405 5.77242 5.79764 6.49420 6.50477 7.19094 7.24228 7.45788 7.98119 8.50339 9.29909 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.005366 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.855421 B = 5217.262413 C = 6865.424181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.013 4.013 3 C -0.136 4.136 4 C 0.212 3.788 5 N -0.324 5.324 6 N -0.104 5.104 7 N -0.096 5.096 8 N -0.287 5.287 9 C 0.089 3.911 10 C 0.496 3.504 11 O -0.582 6.582 12 N -0.674 5.674 13 C 0.132 3.868 14 H 0.058 0.942 15 C -0.111 4.111 16 C -0.117 4.117 17 C 0.152 3.848 18 H 0.005 0.995 19 C -0.128 4.128 20 N -0.592 5.592 21 C -0.236 4.236 22 H 0.082 0.918 23 C -0.051 4.051 24 N -0.938 5.938 25 Si 0.936 3.064 26 H -0.300 1.300 27 H -0.297 1.297 28 H -0.246 1.246 29 C 0.173 3.827 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.416 0.584 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.032 0.968 47 H 0.240 0.760 48 H 0.053 0.947 49 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.546 0.834 -0.155 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.194 4.194 4 C -0.066 4.066 5 N -0.173 5.173 6 N -0.098 5.098 7 N -0.082 5.082 8 N -0.088 5.088 9 C -0.035 4.035 10 C 0.281 3.719 11 O -0.462 6.462 12 N -0.326 5.326 13 C 0.025 3.975 14 H 0.076 0.924 15 C -0.149 4.149 16 C -0.156 4.156 17 C 0.047 3.953 18 H 0.023 0.977 19 C -0.185 4.185 20 N -0.316 5.316 21 C -0.367 4.367 22 H 0.100 0.900 23 C -0.246 4.246 24 N -0.585 5.585 25 Si 0.765 3.235 26 H -0.227 1.227 27 H -0.224 1.224 28 H -0.169 1.169 29 C 0.045 3.955 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.201 0.799 38 H 0.192 0.808 39 H 0.255 0.745 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges 14.835 0.605 1.722 14.947 hybrid contribution -1.188 0.552 -1.220 1.790 sum 13.647 1.157 0.503 13.705 Atomic orbital electron populations 1.21746 0.93232 1.01284 1.03402 1.19965 0.96668 0.97766 0.89078 1.21838 1.02107 0.91352 1.04121 1.26399 0.93673 0.88718 0.97843 1.74854 1.20390 1.22686 0.99335 1.78498 1.07972 0.99875 1.23457 1.78708 1.20714 1.20594 0.88220 1.48038 1.34135 1.19703 1.06933 1.22480 0.99169 0.95601 0.86257 1.20720 0.86996 0.83162 0.81064 1.90798 1.28605 1.71572 1.55254 1.45518 1.23894 1.33120 1.30095 1.21458 0.91120 0.88110 0.96784 0.92361 1.21665 0.99921 0.95821 0.97491 1.22023 0.97481 1.00621 0.95475 1.20864 0.91588 0.90843 0.92034 0.97712 1.21715 0.99424 1.00375 0.97006 1.44278 1.57856 1.08601 1.20821 1.19443 0.98717 0.89706 1.28785 0.90010 1.25747 0.94976 1.01587 1.02317 1.70175 1.02358 1.35122 1.50848 0.85752 0.78738 0.82528 0.76528 1.22747 1.22408 1.16900 1.20821 0.91178 0.96913 0.86559 0.90975 0.90508 0.95298 0.87926 0.90606 0.89334 0.91472 0.79875 0.80788 0.74536 0.89453 0.91534 0.90732 0.89528 0.92129 0.91030 0.94918 0.95098 0.92886 0.99453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.18 71.98 0.66 -3.70 16 2 C -0.01 -0.35 3.26 -11.54 -0.04 -0.38 16 3 C -0.14 -2.69 9.18 71.98 0.66 -2.03 16 4 C 0.21 6.55 6.64 138.13 0.92 7.47 16 5 N -0.32 -11.51 12.36 -50.45 -0.62 -12.14 16 6 N -0.10 -3.89 13.43 37.01 0.50 -3.39 16 7 N -0.10 -3.26 13.29 37.02 0.49 -2.77 16 8 N -0.29 -8.36 2.83 -341.96 -0.97 -9.33 16 9 C 0.09 1.80 6.57 85.63 0.56 2.36 16 10 C 0.50 15.03 7.86 87.66 0.69 15.72 16 11 O -0.58 -24.85 16.09 -3.02 -0.05 -24.90 16 12 N -0.67 -18.07 4.92 -442.17 -2.17 -20.24 16 13 C 0.13 4.34 2.81 45.07 0.13 4.47 16 14 H 0.06 2.15 7.58 -2.38 -0.02 2.13 16 15 C -0.11 -2.72 5.58 30.62 0.17 -2.55 16 16 C -0.12 -2.66 5.23 30.82 0.16 -2.50 16 17 C 0.15 4.99 3.51 45.12 0.16 5.15 16 18 H 0.01 0.19 8.14 -2.39 -0.02 0.17 16 19 C -0.13 -3.68 7.95 71.98 0.57 -3.11 16 20 N -0.59 -24.80 2.90 -674.44 -1.96 -26.76 16 21 C -0.24 -10.95 8.59 84.03 0.72 -10.23 16 22 H 0.08 3.55 6.22 -2.91 -0.02 3.53 16 23 C -0.05 -2.63 4.96 84.86 0.42 -2.20 16 24 N -0.94 -53.77 11.14 21.65 0.24 -53.53 16 25 Si 0.94 40.20 29.58 68.60 2.03 42.22 16 26 H -0.30 -13.34 7.11 99.48 0.71 -12.64 16 27 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 29 C 0.17 7.71 4.88 86.36 0.42 8.13 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 2.55 6.84 -2.39 -0.02 2.54 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.18 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.17 2.30 7.12 -2.39 -0.02 2.28 16 39 H 0.42 8.02 6.78 -92.71 -0.63 7.39 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.44 6.41 -2.38 -0.02 1.43 16 43 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.06 1.64 7.44 -2.39 -0.02 1.62 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.03 1.11 7.62 -2.39 -0.02 1.09 16 47 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 48 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 49 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 Total: -1.00 -76.35 390.31 4.03 -72.32 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.33 Total: 21.90 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.21 Total: 16.61 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -4.49 Total: -128.16 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Total: -76.35 4.03 -72.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.455 kcal (2) G-P(sol) polarization free energy of solvation -76.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds