Wall clock time and date at job start Tue Mar 31 2020 21:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47131 * 2 1 4 4 C 1.50697 * 109.47177 * 119.99955 * 2 1 3 5 5 N 1.31069 * 126.66149 * 299.95969 * 4 2 1 6 6 N 1.28842 * 107.99133 * 180.02562 * 5 4 2 7 7 N 1.28741 * 109.39561 * 359.73587 * 6 5 4 8 8 N 1.29013 * 108.80849 * 0.43170 * 7 6 5 9 9 C 1.46506 * 126.43656 * 179.83408 * 8 7 6 10 10 C 1.50696 * 109.46895 * 269.69313 * 9 8 7 11 11 O 1.21282 * 120.00630 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99577 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00207 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.51824 * 34.91884 * 13 12 10 15 15 C 1.53035 * 109.49852 * 154.99766 * 13 12 10 16 16 C 1.53049 * 109.52504 * 181.31051 * 15 13 12 17 17 C 1.53192 * 109.31248 * 298.64445 * 16 15 13 18 18 H 1.09001 * 109.58457 * 294.70224 * 17 16 15 19 19 C 1.52998 * 109.58564 * 174.42421 * 17 16 15 20 20 N 1.46921 * 108.77628 * 54.63395 * 17 16 15 21 21 C 1.36939 * 120.62931 * 126.36876 * 20 17 16 22 22 H 1.08001 * 120.00012 * 330.84668 * 21 20 17 23 23 C 1.38809 * 120.00063 * 150.84690 * 21 20 17 24 24 N 1.31614 * 120.00341 * 160.75710 * 23 21 20 25 25 Si 1.86799 * 119.99882 * 340.76060 * 23 21 20 26 26 H 1.48502 * 109.47406 * 92.25151 * 25 23 21 27 27 H 1.48504 * 109.47139 * 212.25292 * 25 23 21 28 28 H 1.48494 * 109.47265 * 332.25020 * 25 23 21 29 29 C 1.46926 * 118.74087 * 306.39312 * 20 17 16 30 30 H 1.09001 * 109.46706 * 299.99849 * 1 2 3 31 31 H 1.08997 * 109.47106 * 59.99903 * 1 2 3 32 32 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46706 * 240.00151 * 2 1 3 34 34 H 1.09000 * 109.47521 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47008 * 299.99919 * 3 2 1 36 36 H 1.09000 * 109.47030 * 59.99688 * 3 2 1 37 37 H 1.09003 * 109.46885 * 149.69357 * 9 8 7 38 38 H 1.08997 * 109.47091 * 29.69275 * 9 8 7 39 39 H 0.97003 * 120.00548 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.45804 * 61.30452 * 15 13 12 41 41 H 1.08999 * 109.46487 * 301.32588 * 15 13 12 42 42 H 1.09000 * 109.49638 * 58.59737 * 16 15 13 43 43 H 1.09001 * 109.49262 * 178.65986 * 16 15 13 44 44 H 1.09001 * 109.47265 * 59.99944 * 19 17 16 45 45 H 1.08997 * 109.47061 * 179.97438 * 19 17 16 46 46 H 1.09005 * 109.46936 * 299.99898 * 19 17 16 47 47 H 0.96998 * 120.00900 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.58860 * 173.39697 * 29 20 17 49 49 H 1.09000 * 109.58061 * 293.67513 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7983 -0.3779 2.4764 6 7 2.3998 -1.2281 3.2350 7 7 3.0070 -2.0976 2.5051 8 7 2.8091 -1.8092 1.2632 9 6 3.3273 -2.5434 0.1062 10 6 4.6651 -1.9749 -0.2913 11 8 5.1394 -1.0481 0.3308 12 7 5.3346 -2.4965 -1.3383 13 6 6.6350 -1.9436 -1.7253 14 1 7.1752 -1.6253 -0.8337 15 6 7.4467 -3.0130 -2.4598 16 6 8.8178 -2.4462 -2.8355 17 6 8.6317 -1.2502 -3.7745 18 1 8.1965 -1.5883 -4.7149 19 6 9.9871 -0.5935 -4.0434 20 7 7.7332 -0.2808 -3.1330 21 6 8.1090 1.0279 -2.9864 22 1 9.1540 1.2816 -2.8858 23 6 7.1469 2.0283 -2.9669 24 7 7.4348 3.2084 -2.4602 25 14 5.4436 1.6996 -3.6598 26 1 4.5493 1.2279 -2.5722 27 1 4.8965 2.9510 -4.2429 28 1 5.5309 0.6587 -4.7152 29 6 6.4240 -0.7421 -2.6514 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.6302 -2.4483 -0.7264 38 1 3.4422 -3.5958 0.3654 39 1 4.9556 -3.2380 -1.8358 40 1 6.9175 -3.3129 -3.3643 41 1 7.5771 -3.8792 -1.8111 42 1 9.3375 -2.1232 -1.9335 43 1 9.4043 -3.2157 -3.3375 44 1 10.6561 -1.3180 -4.5077 45 1 9.8526 0.2568 -4.7119 46 1 10.4183 -0.2517 -3.1024 47 1 6.7627 3.9076 -2.4469 48 1 5.9329 0.0612 -2.1020 49 1 5.8055 -1.0358 -3.4995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883257.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:27 Heat of formation + Delta-G solvation = 100.770327 kcal Electronic energy + Delta-G solvation = -30986.639759 eV Core-core repulsion = 26987.255689 eV Total energy + Delta-G solvation = -3999.384070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.22619 -40.09941 -38.15903 -36.30588 -35.49177 -34.83897 -32.95373 -31.68014 -31.18148 -30.79020 -29.08581 -27.37267 -26.27868 -25.00444 -24.49420 -23.49326 -22.83507 -21.37869 -20.79487 -20.56367 -19.47383 -18.02274 -17.89004 -16.71314 -16.35593 -16.07387 -15.88696 -15.37513 -15.02913 -14.70794 -14.68013 -14.01068 -13.93546 -13.59243 -13.52736 -13.43920 -13.18205 -12.92843 -12.53260 -12.37533 -12.29938 -12.20537 -11.83658 -11.82347 -11.60267 -11.51437 -11.39123 -11.37744 -11.34618 -10.99943 -10.90736 -10.84369 -10.49478 -10.36955 -10.20630 -10.07731 -9.86891 -9.81795 -9.49152 -9.11241 -8.62015 -7.01405 -5.97598 -3.36614 1.12138 1.71073 2.25440 2.32018 2.93493 3.24409 3.38629 3.42078 3.74044 3.95709 4.24250 4.27972 4.43400 4.48409 4.75724 4.85234 4.87046 5.00001 5.01053 5.10194 5.31604 5.35636 5.39749 5.43478 5.51333 5.60335 5.64696 5.70594 5.73753 5.78206 5.84871 5.96949 5.98505 6.02390 6.11556 6.15066 6.22457 6.25032 6.28876 6.39906 6.43825 6.48512 6.64498 6.90944 7.01091 7.30267 7.91445 8.00850 8.32218 8.59562 8.88684 9.68218 10.03105 11.17866 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.004225 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.531705 B = 6624.998177 C = 7917.381879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.012 4.012 3 C -0.147 4.147 4 C 0.207 3.793 5 N -0.300 5.300 6 N -0.074 5.074 7 N -0.088 5.088 8 N -0.295 5.295 9 C 0.092 3.908 10 C 0.492 3.508 11 O -0.504 6.504 12 N -0.715 5.715 13 C 0.125 3.875 14 H 0.093 0.907 15 C -0.116 4.116 16 C -0.128 4.128 17 C 0.169 3.831 18 H 0.031 0.969 19 C -0.138 4.138 20 N -0.596 5.596 21 C -0.263 4.263 22 H 0.093 0.907 23 C 0.028 3.972 24 N -0.903 5.903 25 Si 0.880 3.120 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.272 1.272 29 C 0.121 3.879 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.398 0.602 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.263 0.737 48 H 0.078 0.922 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -15.495 -2.129 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.205 4.205 4 C -0.071 4.071 5 N -0.148 5.148 6 N -0.068 5.068 7 N -0.073 5.073 8 N -0.095 5.095 9 C -0.035 4.035 10 C 0.274 3.726 11 O -0.377 6.377 12 N -0.368 5.368 13 C 0.020 3.980 14 H 0.111 0.889 15 C -0.154 4.154 16 C -0.168 4.168 17 C 0.063 3.937 18 H 0.048 0.952 19 C -0.195 4.195 20 N -0.320 5.320 21 C -0.392 4.392 22 H 0.110 0.890 23 C -0.171 4.171 24 N -0.546 5.546 25 Si 0.710 3.290 26 H -0.216 1.216 27 H -0.231 1.231 28 H -0.198 1.198 29 C -0.006 4.006 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.232 0.768 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.118 -14.771 -0.196 17.905 hybrid contribution -1.085 -0.574 -1.585 2.004 sum -11.203 -15.345 -1.780 19.083 Atomic orbital electron populations 1.21846 0.91931 1.02447 1.03779 1.19817 0.97225 0.96903 0.89453 1.21859 1.02630 0.92695 1.03352 1.26088 0.94509 0.88507 0.97995 1.74944 1.20808 1.20743 0.98309 1.78575 1.06889 0.98857 1.22440 1.78843 1.19187 1.22087 0.87187 1.47826 1.33918 1.20985 1.06811 1.22010 0.96474 0.98547 0.86420 1.20265 0.86281 0.84406 0.81653 1.90905 1.67550 1.27013 1.52202 1.46022 1.22249 1.36959 1.31522 1.21915 0.81564 0.94801 0.99681 0.88853 1.21688 0.97089 0.97023 0.99621 1.22065 0.95271 0.98422 1.01046 1.20514 0.91379 0.88982 0.92828 0.95172 1.21815 0.95441 1.00185 1.02065 1.44357 1.14854 1.06607 1.66228 1.18907 0.95053 0.79924 1.45271 0.88968 1.25322 0.97706 0.95106 0.99002 1.69806 1.34793 1.04385 1.45579 0.86970 0.86061 0.76405 0.79517 1.21572 1.23122 1.19767 1.21685 0.89197 0.95127 0.94572 0.90886 0.90743 0.92511 0.89274 0.91454 0.90860 0.90965 0.84526 0.84040 0.76843 0.91956 0.92279 0.91543 0.92010 0.94038 0.91688 0.92303 0.92719 0.90370 0.95788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.01 -0.14 3.26 -91.77 -0.30 -0.44 16 3 C -0.15 -1.96 9.17 37.15 0.34 -1.62 16 4 C 0.21 2.94 6.64 -155.43 -1.03 1.91 16 5 N -0.30 -5.00 12.36 32.70 0.40 -4.60 16 6 N -0.07 -1.31 13.43 60.35 0.81 -0.50 16 7 N -0.09 -1.42 13.29 60.35 0.80 -0.62 16 8 N -0.29 -4.03 2.83 -59.44 -0.17 -4.20 16 9 C 0.09 0.84 6.57 -5.19 -0.03 0.81 16 10 C 0.49 6.82 7.87 -10.99 -0.09 6.73 16 11 O -0.50 -10.17 16.09 5.56 0.09 -10.08 16 12 N -0.72 -8.53 5.08 -53.71 -0.27 -8.81 16 13 C 0.13 2.02 2.60 -67.83 -0.18 1.84 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 15 C -0.12 -1.48 5.36 -26.69 -0.14 -1.63 16 16 C -0.13 -1.86 5.37 -26.61 -0.14 -2.01 16 17 C 0.17 3.04 3.50 -67.60 -0.24 2.80 16 18 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 19 C -0.14 -2.39 7.94 37.16 0.30 -2.10 16 20 N -0.60 -13.36 2.75 -164.80 -0.45 -13.81 16 21 C -0.26 -7.10 9.05 -15.06 -0.14 -7.24 16 22 H 0.09 2.63 6.39 -52.49 -0.34 2.30 16 23 C 0.03 0.80 5.24 -17.43 -0.09 0.71 16 24 N -0.90 -27.67 13.97 55.49 0.78 -26.90 16 25 Si 0.88 21.81 24.34 -169.99 -4.14 17.67 16 26 H -0.29 -6.91 6.63 56.52 0.37 -6.53 16 27 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 28 H -0.27 -6.52 6.63 56.52 0.37 -6.14 16 29 C 0.12 2.48 3.78 -3.73 -0.01 2.47 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.85 6.85 -51.93 -0.36 0.49 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.14 0.68 7.13 -51.93 -0.37 0.31 16 38 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 46 H 0.06 1.09 7.40 -51.93 -0.38 0.71 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.08 1.89 4.62 -51.93 -0.24 1.65 16 49 H 0.02 0.48 7.02 -51.93 -0.36 0.11 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -37.19 387.44 -5.60 -42.80 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.88 Total: 1.82 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.42 Total: 1.39 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 1.90 Total: -59.43 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.19 -5.60 -42.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883257.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.568 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds