Wall clock time and date at job start Tue Mar 31 2020 21:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47131 * 2 1 4 4 C 1.50697 * 109.47177 * 119.99955 * 2 1 3 5 5 N 1.31069 * 126.66149 * 299.95969 * 4 2 1 6 6 N 1.28842 * 107.99133 * 180.02562 * 5 4 2 7 7 N 1.28741 * 109.39561 * 359.73587 * 6 5 4 8 8 N 1.29013 * 108.80849 * 0.43170 * 7 6 5 9 9 C 1.46506 * 126.43656 * 179.83408 * 8 7 6 10 10 C 1.50696 * 109.46895 * 269.69313 * 9 8 7 11 11 O 1.21282 * 120.00630 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99577 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00207 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.51824 * 34.91884 * 13 12 10 15 15 C 1.53035 * 109.49852 * 154.99766 * 13 12 10 16 16 C 1.53049 * 109.52504 * 181.31051 * 15 13 12 17 17 C 1.53192 * 109.31248 * 298.64445 * 16 15 13 18 18 H 1.09001 * 109.58457 * 294.70224 * 17 16 15 19 19 C 1.52998 * 109.58564 * 174.42421 * 17 16 15 20 20 N 1.46921 * 108.77628 * 54.63395 * 17 16 15 21 21 C 1.36939 * 120.62931 * 126.36876 * 20 17 16 22 22 H 1.08001 * 120.00012 * 330.84668 * 21 20 17 23 23 C 1.38809 * 120.00063 * 150.84690 * 21 20 17 24 24 N 1.31614 * 120.00341 * 160.75710 * 23 21 20 25 25 Si 1.86799 * 119.99882 * 340.76060 * 23 21 20 26 26 H 1.48502 * 109.47406 * 92.25151 * 25 23 21 27 27 H 1.48504 * 109.47139 * 212.25292 * 25 23 21 28 28 H 1.48494 * 109.47265 * 332.25020 * 25 23 21 29 29 C 1.46926 * 118.74087 * 306.39312 * 20 17 16 30 30 H 1.09001 * 109.46706 * 299.99849 * 1 2 3 31 31 H 1.08997 * 109.47106 * 59.99903 * 1 2 3 32 32 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46706 * 240.00151 * 2 1 3 34 34 H 1.09000 * 109.47521 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47008 * 299.99919 * 3 2 1 36 36 H 1.09000 * 109.47030 * 59.99688 * 3 2 1 37 37 H 1.09003 * 109.46885 * 149.69357 * 9 8 7 38 38 H 1.08997 * 109.47091 * 29.69275 * 9 8 7 39 39 H 0.97003 * 120.00548 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.45804 * 61.30452 * 15 13 12 41 41 H 1.08999 * 109.46487 * 301.32588 * 15 13 12 42 42 H 1.09000 * 109.49638 * 58.59737 * 16 15 13 43 43 H 1.09001 * 109.49262 * 178.65986 * 16 15 13 44 44 H 1.09001 * 109.47265 * 59.99944 * 19 17 16 45 45 H 1.08997 * 109.47061 * 179.97438 * 19 17 16 46 46 H 1.09005 * 109.46936 * 299.99898 * 19 17 16 47 47 H 0.96998 * 120.00900 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.58860 * 173.39697 * 29 20 17 49 49 H 1.09000 * 109.58061 * 293.67513 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7983 -0.3779 2.4764 6 7 2.3998 -1.2281 3.2350 7 7 3.0070 -2.0976 2.5051 8 7 2.8091 -1.8092 1.2632 9 6 3.3273 -2.5434 0.1062 10 6 4.6651 -1.9749 -0.2913 11 8 5.1394 -1.0481 0.3308 12 7 5.3346 -2.4965 -1.3383 13 6 6.6350 -1.9436 -1.7253 14 1 7.1752 -1.6253 -0.8337 15 6 7.4467 -3.0130 -2.4598 16 6 8.8178 -2.4462 -2.8355 17 6 8.6317 -1.2502 -3.7745 18 1 8.1965 -1.5883 -4.7149 19 6 9.9871 -0.5935 -4.0434 20 7 7.7332 -0.2808 -3.1330 21 6 8.1090 1.0279 -2.9864 22 1 9.1540 1.2816 -2.8858 23 6 7.1469 2.0283 -2.9669 24 7 7.4348 3.2084 -2.4602 25 14 5.4436 1.6996 -3.6598 26 1 4.5493 1.2279 -2.5722 27 1 4.8965 2.9510 -4.2429 28 1 5.5309 0.6587 -4.7152 29 6 6.4240 -0.7421 -2.6514 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.6302 -2.4483 -0.7264 38 1 3.4422 -3.5958 0.3654 39 1 4.9556 -3.2380 -1.8358 40 1 6.9175 -3.3129 -3.3643 41 1 7.5771 -3.8792 -1.8111 42 1 9.3375 -2.1232 -1.9335 43 1 9.4043 -3.2157 -3.3375 44 1 10.6561 -1.3180 -4.5077 45 1 9.8526 0.2568 -4.7119 46 1 10.4183 -0.2517 -3.1024 47 1 6.7627 3.9076 -2.4469 48 1 5.9329 0.0612 -2.1020 49 1 5.8055 -1.0358 -3.4995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883257.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:26 Heat of formation + Delta-G solvation = 70.956298 kcal Electronic energy + Delta-G solvation = -30987.932592 eV Core-core repulsion = 26987.255689 eV Total energy + Delta-G solvation = -4000.676903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.35049 -41.28787 -39.56801 -37.26742 -36.58976 -36.17236 -34.69561 -32.84824 -32.60710 -32.38704 -30.09966 -28.22784 -27.81015 -26.62762 -25.56333 -24.78765 -24.26976 -22.55066 -21.99355 -21.62571 -20.97177 -19.12810 -18.89395 -18.51341 -17.59743 -17.43264 -16.98987 -16.54225 -16.37525 -16.30204 -15.65654 -15.38562 -15.22344 -15.06058 -14.72358 -14.52584 -14.40048 -14.30214 -13.87659 -13.77489 -13.44478 -13.28388 -13.20715 -13.03892 -12.77067 -12.73753 -12.57147 -12.51725 -12.48592 -12.40296 -12.36104 -12.09353 -11.99234 -11.77253 -11.70512 -11.46418 -11.33959 -11.22525 -10.97303 -10.77749 -10.27779 -8.87310 -8.15742 -5.49272 0.01622 0.79918 1.07326 1.23901 1.28564 1.34572 1.44679 1.92101 2.42121 2.78995 3.03519 3.08245 3.28750 3.47324 3.53483 3.80492 3.83644 3.90115 3.95666 4.01677 4.08481 4.12144 4.25314 4.28771 4.38505 4.57868 4.59053 4.63387 4.65777 4.69264 4.81707 4.83049 4.85514 4.87302 4.94157 4.98794 5.06534 5.09083 5.13562 5.16141 5.24037 5.28911 5.34169 5.48603 5.63324 5.89897 6.17537 6.34477 6.93080 7.07494 7.42351 7.65056 8.01990 9.03881 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.004225 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.531705 B = 6624.998177 C = 7917.381879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.012 4.012 3 C -0.147 4.147 4 C 0.207 3.793 5 N -0.327 5.327 6 N -0.107 5.107 7 N -0.098 5.098 8 N -0.292 5.292 9 C 0.090 3.910 10 C 0.489 3.511 11 O -0.578 6.578 12 N -0.692 5.692 13 C 0.137 3.863 14 H 0.047 0.953 15 C -0.106 4.106 16 C -0.123 4.123 17 C 0.158 3.842 18 H 0.052 0.948 19 C -0.133 4.133 20 N -0.614 5.614 21 C -0.241 4.241 22 H 0.058 0.942 23 C -0.046 4.046 24 N -0.963 5.963 25 Si 0.949 3.051 26 H -0.281 1.281 27 H -0.315 1.315 28 H -0.248 1.248 29 C 0.119 3.881 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.020 0.980 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.192 0.808 38 H 0.188 0.812 39 H 0.428 0.572 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.041 0.959 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.257 0.743 48 H 0.034 0.966 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -20.522 -4.983 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.033 4.033 3 C -0.205 4.205 4 C -0.071 4.071 5 N -0.176 5.176 6 N -0.100 5.100 7 N -0.084 5.084 8 N -0.093 5.093 9 C -0.034 4.034 10 C 0.273 3.727 11 O -0.457 6.457 12 N -0.346 5.346 13 C 0.030 3.970 14 H 0.066 0.934 15 C -0.144 4.144 16 C -0.163 4.163 17 C 0.054 3.946 18 H 0.070 0.930 19 C -0.191 4.191 20 N -0.340 5.340 21 C -0.371 4.371 22 H 0.076 0.924 23 C -0.240 4.240 24 N -0.609 5.609 25 Si 0.778 3.222 26 H -0.208 1.208 27 H -0.244 1.244 28 H -0.172 1.172 29 C -0.008 4.008 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.040 0.960 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.209 0.791 38 H 0.205 0.795 39 H 0.267 0.733 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.060 0.940 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.394 -19.932 -3.104 23.676 hybrid contribution -0.195 0.954 -0.715 1.208 sum -12.588 -18.978 -3.819 23.092 Atomic orbital electron populations 1.21834 0.89324 1.03881 1.04238 1.20063 0.99219 0.95024 0.89013 1.21842 0.99552 0.94994 1.04139 1.26622 0.93880 0.88448 0.98121 1.74851 1.21804 1.21268 0.99662 1.78531 1.08133 0.99776 1.23596 1.78720 1.19034 1.22198 0.88427 1.48115 1.33165 1.21006 1.06981 1.22590 0.94398 0.99760 0.86621 1.21103 0.87524 0.83162 0.80911 1.90907 1.69645 1.30465 1.54646 1.45678 1.20684 1.37095 1.31188 1.21402 0.83539 0.94858 0.97174 0.93447 1.21677 0.95336 0.96258 1.01089 1.21991 0.97024 0.97774 0.99462 1.20873 0.90302 0.89185 0.94250 0.93029 1.21769 0.96506 1.00385 1.00421 1.44535 1.16307 1.05637 1.67478 1.18863 0.93601 0.82469 1.42157 0.92401 1.26071 1.02377 0.95053 1.00452 1.69982 1.36215 1.05861 1.48880 0.85836 0.81129 0.76133 0.79056 1.20798 1.24411 1.17213 1.21675 0.88037 0.95571 0.95476 0.92266 0.88475 0.90579 0.86597 0.96038 0.88787 0.91590 0.79135 0.79464 0.73255 0.88705 0.89031 0.93960 0.87929 0.89766 0.94401 0.94923 0.93448 0.94787 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.18 71.98 0.66 -1.19 16 2 C -0.01 -0.24 3.26 -11.54 -0.04 -0.27 16 3 C -0.15 -3.92 9.17 71.98 0.66 -3.26 16 4 C 0.21 5.67 6.64 138.13 0.92 6.58 16 5 N -0.33 -11.06 12.36 -50.45 -0.62 -11.68 16 6 N -0.11 -3.86 13.43 37.01 0.50 -3.36 16 7 N -0.10 -3.12 13.29 37.02 0.49 -2.63 16 8 N -0.29 -7.39 2.83 -341.98 -0.97 -8.36 16 9 C 0.09 1.24 6.57 85.63 0.56 1.80 16 10 C 0.49 12.32 7.87 87.66 0.69 13.01 16 11 O -0.58 -23.81 16.09 -3.03 -0.05 -23.86 16 12 N -0.69 -13.70 5.08 -442.22 -2.25 -15.95 16 13 C 0.14 4.08 2.60 45.06 0.12 4.20 16 14 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 15 C -0.11 -2.15 5.36 30.62 0.16 -1.99 16 16 C -0.12 -3.11 5.37 30.68 0.16 -2.95 16 17 C 0.16 5.32 3.50 44.97 0.16 5.48 16 18 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.13 -4.57 7.94 71.98 0.57 -4.00 16 20 N -0.61 -27.36 2.75 -675.30 -1.85 -29.21 16 21 C -0.24 -13.61 9.05 84.03 0.76 -12.84 16 22 H 0.06 3.57 6.39 -2.91 -0.02 3.55 16 23 C -0.05 -2.73 5.24 84.86 0.44 -2.29 16 24 N -0.96 -63.02 13.97 21.65 0.30 -62.72 16 25 Si 0.95 46.46 24.34 68.60 1.67 48.13 16 26 H -0.28 -13.23 6.63 99.48 0.66 -12.57 16 27 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 28 H -0.25 -10.96 6.63 99.48 0.66 -10.30 16 29 C 0.12 4.67 3.78 86.35 0.33 5.00 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 1.71 6.85 -2.39 -0.02 1.69 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.19 0.57 7.13 -2.39 -0.02 0.56 16 38 H 0.19 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.43 3.35 8.60 -92.71 -0.80 2.55 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.04 1.46 7.66 -2.39 -0.02 1.45 16 46 H 0.03 1.25 7.40 -2.38 -0.02 1.23 16 47 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 48 H 0.03 1.65 4.62 -2.39 -0.01 1.64 16 49 H 0.05 1.61 7.02 -2.39 -0.02 1.59 16 Total: -1.00 -94.71 387.44 3.45 -91.27 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.07 Total: 11.09 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 6.16 Total: 7.28 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -4.40 Total: -133.90 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -94.71 3.45 -91.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883257.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.222 kcal (2) G-P(sol) polarization free energy of solvation -94.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds