Wall clock time and date at job start Tue Mar 31 2020 21:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.78353 * 2 1 4 4 C 1.54323 * 110.71839 * 236.75696 * 2 1 3 5 5 N 1.47016 * 107.27647 * 219.44752 * 4 2 1 6 6 C 1.36936 * 125.65458 * 178.99110 * 5 4 2 7 7 H 1.08004 * 119.99755 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00328 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00078 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46940 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47084 * 119.99565 * 10 8 6 13 13 H 1.48489 * 109.47032 * 239.99676 * 10 8 6 14 14 C 1.47425 * 108.70031 * 358.94039 * 5 4 2 15 15 C 1.54902 * 104.83475 * 24.12923 * 14 5 4 16 16 H 1.09008 * 111.03943 * 81.07536 * 15 14 5 17 17 N 1.46501 * 111.01016 * 204.91524 * 15 14 5 18 18 C 1.34771 * 120.00043 * 267.19930 * 17 15 14 19 19 O 1.21279 * 120.00107 * 359.97438 * 18 17 15 20 20 C 1.50700 * 119.99924 * 179.97438 * 18 17 15 21 21 C 1.50702 * 109.47232 * 179.97438 * 20 18 17 22 22 N 1.33321 * 126.54985 * 269.69114 * 21 20 18 23 23 N 1.28993 * 107.35299 * 180.26226 * 22 21 20 24 24 N 1.28782 * 108.72863 * 359.97438 * 23 22 21 25 25 C 1.46501 * 125.45009 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47040 * 240.00020 * 25 24 23 27 27 C 1.52998 * 109.46922 * 359.97438 * 25 24 23 28 28 C 1.52994 * 109.47580 * 119.99808 * 25 24 23 29 29 N 1.28878 * 109.10297 * 0.02562 * 24 23 22 30 30 H 1.09004 * 109.46343 * 296.76468 * 1 2 3 31 31 H 1.08996 * 109.47174 * 56.75763 * 1 2 3 32 32 H 1.08994 * 109.47076 * 176.76726 * 1 2 3 33 33 H 1.09009 * 109.88215 * 338.86563 * 4 2 1 34 34 H 1.09003 * 109.88385 * 100.02546 * 4 2 1 35 35 H 0.96996 * 119.99796 * 180.02562 * 9 8 6 36 36 H 1.09001 * 110.36763 * 265.28871 * 14 5 4 37 37 H 1.09000 * 110.36772 * 142.97027 * 14 5 4 38 38 H 0.97002 * 119.99671 * 87.19642 * 17 15 14 39 39 H 1.08997 * 109.47494 * 59.99800 * 20 18 17 40 40 H 1.08999 * 109.46904 * 299.99899 * 20 18 17 41 41 H 1.09006 * 109.46942 * 59.99754 * 26 25 24 42 42 H 1.08992 * 109.47062 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.46952 * 300.00156 * 26 25 24 44 44 H 1.09004 * 109.47277 * 60.00379 * 27 25 24 45 45 H 1.09004 * 109.47404 * 180.02562 * 27 25 24 46 46 H 1.09001 * 109.47495 * 299.99971 * 27 25 24 47 47 H 1.09007 * 109.46678 * 59.99694 * 28 25 24 48 48 H 1.09001 * 109.47495 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.47265 * 300.00311 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2444 -1.5509 -0.7391 6 6 4.0043 -2.3970 -1.5018 7 1 3.7612 -2.5507 -2.5429 8 6 5.0864 -3.0578 -0.9369 9 7 5.3823 -2.8709 0.3319 10 14 6.1225 -4.2126 -1.9773 11 1 5.5848 -4.2490 -3.3611 12 1 7.5266 -3.7295 -2.0040 13 1 6.0796 -5.5774 -1.3940 14 6 3.4632 -1.2499 0.6875 15 6 2.0790 -0.7955 1.2138 16 1 1.4447 -1.6532 1.4379 17 7 2.2215 0.0696 2.3875 18 6 2.1874 -0.4628 3.6251 19 8 2.0383 -1.6580 3.7673 20 6 2.3346 0.4270 4.8325 21 6 2.2614 -0.4087 6.0844 22 7 1.1616 -0.7079 6.7761 23 7 1.5234 -1.4347 7.7785 24 7 2.8002 -1.5962 7.7327 25 6 3.5948 -2.3624 8.6958 26 6 4.6257 -1.4424 9.3531 27 6 2.6729 -2.9438 9.7696 28 6 4.3159 -3.5007 7.9712 29 7 3.2672 -0.9758 6.7041 30 1 -0.3632 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0579 33 1 1.3128 -1.4759 -1.5775 34 1 2.3740 -0.1026 -1.9978 35 1 6.1387 -3.3324 0.7265 36 1 4.1932 -0.4481 0.7984 37 1 3.7959 -2.1427 1.2168 38 1 2.3405 1.0255 2.2738 39 1 1.5317 1.1641 4.8407 40 1 3.2965 0.9380 4.7920 41 1 4.1119 -0.6314 9.8694 42 1 5.2165 -2.0124 10.0699 43 1 5.2824 -1.0278 8.5883 44 1 1.9383 -3.5992 9.3017 45 1 3.2642 -3.5136 10.4865 46 1 2.1596 -2.1326 10.2859 47 1 4.9727 -3.0861 7.2064 48 1 4.9075 -4.0706 8.6878 49 1 3.5815 -4.1562 7.5030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079754447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:28 Heat of formation + Delta-G solvation = 111.568895 kcal Electronic energy + Delta-G solvation = -29701.692210 eV Core-core repulsion = 25702.776401 eV Total energy + Delta-G solvation = -3998.915809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.26972 -39.51630 -37.87861 -37.43851 -33.89308 -33.48874 -33.13953 -32.59864 -30.33822 -29.73119 -27.92844 -27.86326 -27.33184 -25.59627 -24.57279 -23.71822 -22.50606 -20.75489 -20.50871 -20.06728 -19.46021 -17.41756 -17.18977 -16.89630 -16.47106 -15.93570 -15.20563 -14.78781 -14.70689 -14.48722 -14.33697 -13.85107 -13.66169 -13.50516 -13.28067 -12.95876 -12.86985 -12.81003 -12.70942 -12.53546 -12.38495 -12.19697 -12.06215 -11.87312 -11.81018 -11.67318 -11.38102 -11.19866 -11.07117 -10.82268 -10.78946 -10.74932 -10.60629 -10.32734 -10.18372 -9.94023 -9.76207 -9.73036 -9.42458 -8.63165 -8.42511 -6.81165 -5.60965 -3.04561 1.34132 1.84053 2.22247 2.96991 3.41867 3.46535 3.49382 3.50074 3.82383 4.08968 4.19103 4.29958 4.51608 4.56402 4.96038 5.02610 5.05931 5.15085 5.16469 5.20737 5.21610 5.28914 5.33645 5.34575 5.45305 5.48483 5.55791 5.56952 5.68362 5.76019 5.78949 5.84974 5.97160 6.00179 6.07399 6.19485 6.27729 6.29633 6.41856 6.51495 6.69042 6.82558 6.98296 7.48402 7.64992 7.85583 7.95236 8.40311 8.48249 8.59888 9.24018 9.85437 10.48710 11.41791 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.002996 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.182087 B = 9344.133461 C =11234.218032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.604 5.604 6 C -0.225 4.225 7 H 0.079 0.921 8 C -0.011 4.011 9 N -0.917 5.917 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.149 3.851 15 C 0.120 3.880 16 H 0.092 0.908 17 N -0.711 5.711 18 C 0.519 3.481 19 O -0.527 6.527 20 C -0.044 4.044 21 C 0.188 3.812 22 N -0.279 5.279 23 N -0.066 5.066 24 N -0.130 5.130 25 C 0.179 3.821 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.161 4.161 29 N -0.291 5.291 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.023 0.977 35 H 0.251 0.749 36 H 0.014 0.986 37 H 0.111 0.889 38 H 0.396 0.604 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 7.620 18.006 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.330 5.330 6 C -0.353 4.353 7 H 0.097 0.903 8 C -0.206 4.206 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.023 3.977 15 C 0.015 3.985 16 H 0.110 0.890 17 N -0.361 5.361 18 C 0.302 3.698 19 O -0.403 6.403 20 C -0.088 4.088 21 C -0.095 4.095 22 N -0.150 5.150 23 N -0.059 5.059 24 N -0.044 5.044 25 C 0.098 3.902 26 C -0.216 4.216 27 C -0.210 4.210 28 C -0.219 4.219 29 N -0.140 5.140 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.128 0.872 38 H 0.229 0.771 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.698 6.266 18.660 20.237 hybrid contribution 0.916 0.178 -1.095 1.439 sum -3.782 6.444 17.564 19.088 Atomic orbital electron populations 1.21739 0.94947 1.01890 1.00907 1.22432 0.95236 0.99155 0.96250 0.90759 1.21349 0.90257 0.93177 0.93765 1.44404 1.30854 1.50487 1.07245 1.19109 1.06194 1.17084 0.92903 0.90302 1.24820 0.98839 1.00583 0.96390 1.69821 1.29889 1.46019 1.10830 0.86007 0.79993 0.80475 0.79074 1.20500 1.21768 1.21744 1.22221 0.89378 1.01106 0.85021 1.22707 1.01018 0.92402 0.82356 0.88992 1.45757 1.73949 1.10997 1.05431 1.19993 0.77105 0.88710 0.83983 1.90761 1.48057 1.15465 1.85976 1.19878 1.06633 0.96331 0.85916 1.24598 0.85106 1.00655 0.99139 1.75765 1.25271 1.12016 1.01924 1.78843 0.95944 1.13839 1.17259 1.50391 1.04900 1.32039 1.17097 1.21356 0.91025 0.91279 0.86512 1.22221 0.98195 0.99480 1.01667 1.22078 0.99539 1.02295 0.97067 1.22247 1.01371 0.96573 1.01715 1.74582 1.27918 1.11607 0.99934 0.93014 0.92906 0.92525 0.95502 0.95872 0.93784 0.96854 0.87176 0.77064 0.85954 0.86045 0.91566 0.89282 0.90316 0.90571 0.89382 0.90744 0.90128 0.89334 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.16 37.16 0.34 -1.57 16 2 C -0.11 -1.86 3.20 -88.78 -0.28 -2.15 16 3 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 4 C 0.14 2.93 6.84 -3.07 -0.02 2.91 16 5 N -0.60 -15.73 3.39 -170.08 -0.58 -16.31 16 6 C -0.22 -6.38 10.27 -15.06 -0.15 -6.53 16 7 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -27.64 10.09 55.49 0.56 -27.08 16 10 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.15 3.71 5.58 -2.53 -0.01 3.70 16 15 C 0.12 2.35 2.87 -65.78 -0.19 2.16 16 16 H 0.09 2.04 7.44 -51.92 -0.39 1.65 16 17 N -0.71 -11.07 5.20 -51.73 -0.27 -11.34 16 18 C 0.52 8.79 7.82 -10.99 -0.09 8.71 16 19 O -0.53 -11.78 15.67 5.56 0.09 -11.70 16 20 C -0.04 -0.56 6.33 -29.03 -0.18 -0.74 16 21 C 0.19 2.94 6.86 -156.62 -1.07 1.86 16 22 N -0.28 -4.62 12.50 32.45 0.41 -4.21 16 23 N -0.07 -1.02 12.24 60.35 0.74 -0.28 16 24 N -0.13 -1.79 3.73 0.48 0.00 -1.79 16 25 C 0.18 1.68 1.30 -131.82 -0.17 1.50 16 26 C -0.16 -1.11 8.66 37.16 0.32 -0.79 16 27 C -0.15 -1.08 7.91 37.16 0.29 -0.79 16 28 C -0.16 -1.49 8.66 37.15 0.32 -1.17 16 29 N -0.29 -4.50 11.83 32.47 0.38 -4.11 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 33 H 0.03 0.56 7.77 -51.92 -0.40 0.15 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 3.26 5.87 -51.93 -0.30 2.95 16 38 H 0.40 4.60 8.57 -40.82 -0.35 4.25 16 39 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -37.42 400.46 -6.82 -44.24 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.17 Total: 2.33 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.00 Total: 6.70 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: 1.24 Total: -65.12 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.42 -6.82 -44.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079754447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.807 kcal (2) G-P(sol) polarization free energy of solvation -37.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds