Wall clock time and date at job start Tue Mar 31 2020 21:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.78353 * 2 1 4 4 C 1.54323 * 110.71839 * 236.75696 * 2 1 3 5 5 N 1.47016 * 107.27647 * 219.44752 * 4 2 1 6 6 C 1.36936 * 125.65458 * 178.99110 * 5 4 2 7 7 H 1.08004 * 119.99755 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00328 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00078 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46940 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47084 * 119.99565 * 10 8 6 13 13 H 1.48489 * 109.47032 * 239.99676 * 10 8 6 14 14 C 1.47425 * 108.70031 * 358.94039 * 5 4 2 15 15 C 1.54902 * 104.83475 * 24.12923 * 14 5 4 16 16 H 1.09008 * 111.03943 * 81.07536 * 15 14 5 17 17 N 1.46501 * 111.01016 * 204.91524 * 15 14 5 18 18 C 1.34771 * 120.00043 * 267.19930 * 17 15 14 19 19 O 1.21279 * 120.00107 * 359.97438 * 18 17 15 20 20 C 1.50700 * 119.99924 * 179.97438 * 18 17 15 21 21 C 1.50702 * 109.47232 * 179.97438 * 20 18 17 22 22 N 1.33321 * 126.54985 * 269.69114 * 21 20 18 23 23 N 1.28993 * 107.35299 * 180.26226 * 22 21 20 24 24 N 1.28782 * 108.72863 * 359.97438 * 23 22 21 25 25 C 1.46501 * 125.45009 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47040 * 240.00020 * 25 24 23 27 27 C 1.52998 * 109.46922 * 359.97438 * 25 24 23 28 28 C 1.52994 * 109.47580 * 119.99808 * 25 24 23 29 29 N 1.28878 * 109.10297 * 0.02562 * 24 23 22 30 30 H 1.09004 * 109.46343 * 296.76468 * 1 2 3 31 31 H 1.08996 * 109.47174 * 56.75763 * 1 2 3 32 32 H 1.08994 * 109.47076 * 176.76726 * 1 2 3 33 33 H 1.09009 * 109.88215 * 338.86563 * 4 2 1 34 34 H 1.09003 * 109.88385 * 100.02546 * 4 2 1 35 35 H 0.96996 * 119.99796 * 180.02562 * 9 8 6 36 36 H 1.09001 * 110.36763 * 265.28871 * 14 5 4 37 37 H 1.09000 * 110.36772 * 142.97027 * 14 5 4 38 38 H 0.97002 * 119.99671 * 87.19642 * 17 15 14 39 39 H 1.08997 * 109.47494 * 59.99800 * 20 18 17 40 40 H 1.08999 * 109.46904 * 299.99899 * 20 18 17 41 41 H 1.09006 * 109.46942 * 59.99754 * 26 25 24 42 42 H 1.08992 * 109.47062 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.46952 * 300.00156 * 26 25 24 44 44 H 1.09004 * 109.47277 * 60.00379 * 27 25 24 45 45 H 1.09004 * 109.47404 * 180.02562 * 27 25 24 46 46 H 1.09001 * 109.47495 * 299.99971 * 27 25 24 47 47 H 1.09007 * 109.46678 * 59.99694 * 28 25 24 48 48 H 1.09001 * 109.47495 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.47265 * 300.00311 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2444 -1.5509 -0.7391 6 6 4.0043 -2.3970 -1.5018 7 1 3.7612 -2.5507 -2.5429 8 6 5.0864 -3.0578 -0.9369 9 7 5.3823 -2.8709 0.3319 10 14 6.1225 -4.2126 -1.9773 11 1 5.5848 -4.2490 -3.3611 12 1 7.5266 -3.7295 -2.0040 13 1 6.0796 -5.5774 -1.3940 14 6 3.4632 -1.2499 0.6875 15 6 2.0790 -0.7955 1.2138 16 1 1.4447 -1.6532 1.4379 17 7 2.2215 0.0696 2.3875 18 6 2.1874 -0.4628 3.6251 19 8 2.0383 -1.6580 3.7673 20 6 2.3346 0.4270 4.8325 21 6 2.2614 -0.4087 6.0844 22 7 1.1616 -0.7079 6.7761 23 7 1.5234 -1.4347 7.7785 24 7 2.8002 -1.5962 7.7327 25 6 3.5948 -2.3624 8.6958 26 6 4.6257 -1.4424 9.3531 27 6 2.6729 -2.9438 9.7696 28 6 4.3159 -3.5007 7.9712 29 7 3.2672 -0.9758 6.7041 30 1 -0.3632 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0579 33 1 1.3128 -1.4759 -1.5775 34 1 2.3740 -0.1026 -1.9978 35 1 6.1387 -3.3324 0.7265 36 1 4.1932 -0.4481 0.7984 37 1 3.7959 -2.1427 1.2168 38 1 2.3405 1.0255 2.2738 39 1 1.5317 1.1641 4.8407 40 1 3.2965 0.9380 4.7920 41 1 4.1119 -0.6314 9.8694 42 1 5.2165 -2.0124 10.0699 43 1 5.2824 -1.0278 8.5883 44 1 1.9383 -3.5992 9.3017 45 1 3.2642 -3.5136 10.4865 46 1 2.1596 -2.1326 10.2859 47 1 4.9727 -3.0861 7.2064 48 1 4.9075 -4.0706 8.6878 49 1 3.5815 -4.1562 7.5030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079754447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:27 Heat of formation + Delta-G solvation = 83.544045 kcal Electronic energy + Delta-G solvation = -29702.907459 eV Core-core repulsion = 25702.776401 eV Total energy + Delta-G solvation = -4000.131058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.37738 -40.98041 -39.21449 -38.55946 -35.65197 -34.65776 -34.35882 -34.08054 -32.16744 -30.92606 -29.19213 -28.54590 -28.37897 -27.34721 -25.64749 -25.36152 -23.79226 -22.26254 -21.65344 -21.58156 -20.92278 -18.93140 -18.60108 -18.05518 -17.73207 -17.40663 -16.91667 -16.32290 -15.86533 -15.60260 -15.32731 -15.17613 -15.06802 -14.66111 -14.41568 -14.38298 -14.26534 -14.06974 -13.89605 -13.46043 -13.37285 -13.24019 -13.21842 -13.01306 -12.88481 -12.87197 -12.85909 -12.60714 -12.57004 -12.17407 -12.16208 -12.02916 -11.94145 -11.85463 -11.85066 -11.63717 -11.42504 -11.32934 -10.81330 -10.78282 -9.98459 -8.90682 -7.78355 -5.24895 0.22620 0.93126 1.05874 1.43045 1.45240 1.55483 1.63287 2.21069 2.48522 2.83382 3.15629 3.31122 3.50553 3.59072 3.64909 3.67876 3.70132 3.92404 4.06116 4.11289 4.22707 4.39707 4.44184 4.50637 4.53631 4.54636 4.58993 4.63741 4.68120 4.70085 4.70414 4.71772 4.79431 4.90318 5.00430 5.05019 5.09397 5.10277 5.21169 5.23724 5.29958 5.35616 5.45390 5.50745 5.65829 5.80621 6.27460 6.60871 7.06321 7.31764 7.34100 7.75931 8.38278 9.22061 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.002996 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.182087 B = 9344.133461 C =11234.218032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.104 0.896 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.238 4.238 7 H 0.086 0.914 8 C -0.072 4.072 9 N -0.949 5.949 10 Si 0.981 3.019 11 H -0.262 1.262 12 H -0.289 1.289 13 H -0.296 1.296 14 C 0.157 3.843 15 C 0.137 3.863 16 H 0.061 0.939 17 N -0.694 5.694 18 C 0.516 3.484 19 O -0.589 6.589 20 C -0.034 4.034 21 C 0.174 3.826 22 N -0.304 5.304 23 N -0.077 5.077 24 N -0.121 5.121 25 C 0.162 3.838 26 C -0.150 4.150 27 C -0.147 4.147 28 C -0.158 4.158 29 N -0.310 5.310 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.027 0.973 34 H 0.035 0.965 35 H 0.243 0.757 36 H -0.003 1.003 37 H 0.057 0.943 38 H 0.420 0.580 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.067 0.933 42 H 0.124 0.876 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.125 0.875 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.128 0.872 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 9.469 18.542 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.122 0.878 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.103 0.897 8 C -0.264 4.264 9 N -0.598 5.598 10 Si 0.809 3.191 11 H -0.186 1.186 12 H -0.216 1.216 13 H -0.223 1.223 14 C 0.030 3.970 15 C 0.031 3.969 16 H 0.079 0.921 17 N -0.345 5.345 18 C 0.302 3.698 19 O -0.469 6.469 20 C -0.077 4.077 21 C -0.109 4.109 22 N -0.175 5.175 23 N -0.069 5.069 24 N -0.037 5.037 25 C 0.083 3.917 26 C -0.209 4.209 27 C -0.205 4.205 28 C -0.216 4.216 29 N -0.160 5.160 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.075 0.925 38 H 0.258 0.742 39 H 0.183 0.817 40 H 0.170 0.830 41 H 0.086 0.914 42 H 0.143 0.857 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.144 0.856 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.147 0.853 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.097 8.186 19.178 21.466 hybrid contribution 1.055 -0.461 -1.241 1.693 sum -4.041 7.725 17.937 19.943 Atomic orbital electron populations 1.21696 0.92162 1.01708 1.03177 1.22382 0.97297 0.99254 0.92169 0.87778 1.21625 0.88532 0.93315 0.95862 1.44716 1.32044 1.50932 1.07740 1.19529 1.06397 1.17226 0.93520 0.89662 1.25718 1.00481 1.02587 0.97593 1.70137 1.30092 1.47089 1.12511 0.84965 0.78134 0.77760 0.78229 1.18625 1.21626 1.22310 1.21876 0.92105 0.98273 0.84745 1.22131 0.97111 0.92980 0.84714 0.92066 1.45513 1.73158 1.11787 1.04090 1.20806 0.75351 0.88417 0.85241 1.90744 1.50778 1.18475 1.86876 1.20043 1.09967 0.95473 0.82174 1.25150 0.84854 1.00957 0.99954 1.75709 1.26106 1.12990 1.02655 1.78749 0.96770 1.14089 1.17339 1.50922 1.04727 1.31126 1.16897 1.21985 0.91822 0.91531 0.86382 1.22235 0.97444 0.99504 1.01675 1.22126 0.99341 1.02253 0.96757 1.22272 1.00735 0.96510 1.02111 1.74552 1.28551 1.12181 1.00728 0.91033 0.90247 0.94069 0.95484 0.94668 0.94694 0.98541 0.92507 0.74180 0.81716 0.82968 0.91390 0.85711 0.91784 0.92218 0.85642 0.90710 0.92466 0.85335 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.16 71.98 0.66 -2.55 16 2 C -0.09 -2.87 3.20 -9.60 -0.03 -2.90 16 3 H 0.10 2.70 8.00 -2.39 -0.02 2.68 16 4 C 0.13 5.35 6.84 86.73 0.59 5.95 16 5 N -0.63 -33.40 3.39 -692.00 -2.35 -35.75 16 6 C -0.24 -13.77 10.27 84.03 0.86 -12.91 16 7 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 8 C -0.07 -4.23 5.49 84.86 0.47 -3.77 16 9 N -0.95 -59.88 10.09 21.65 0.22 -59.66 16 10 Si 0.98 47.39 29.55 68.60 2.03 49.41 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 14 C 0.16 8.12 5.58 86.85 0.48 8.60 16 15 C 0.14 5.39 2.87 46.38 0.13 5.53 16 16 H 0.06 2.82 7.44 -2.38 -0.02 2.80 16 17 N -0.69 -20.86 5.20 -435.96 -2.27 -23.13 16 18 C 0.52 17.43 7.82 87.66 0.69 18.12 16 19 O -0.59 -27.53 15.67 -3.03 -0.05 -27.58 16 20 C -0.03 -0.80 6.33 29.10 0.18 -0.62 16 21 C 0.17 5.42 6.86 138.55 0.95 6.37 16 22 N -0.30 -10.16 12.50 -51.26 -0.64 -10.80 16 23 N -0.08 -2.41 12.24 37.02 0.45 -1.96 16 24 N -0.12 -3.36 3.73 -152.40 -0.57 -3.93 16 25 C 0.16 2.93 1.30 3.60 0.00 2.93 16 26 C -0.15 -1.88 8.66 71.98 0.62 -1.25 16 27 C -0.15 -1.89 7.91 71.98 0.57 -1.32 16 28 C -0.16 -2.94 8.66 71.98 0.62 -2.31 16 29 N -0.31 -9.74 11.83 -51.19 -0.61 -10.35 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16 33 H 0.03 1.10 7.77 -2.38 -0.02 1.08 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.06 3.59 5.87 -2.39 -0.01 3.57 16 38 H 0.42 8.52 8.57 -92.71 -0.79 7.73 16 39 H 0.17 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.13 0.65 8.14 -2.38 -0.02 0.64 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -89.27 400.46 3.19 -86.08 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.15 Total: 17.81 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 6.81 Total: 19.85 kcal Atomic # 7 Polarization: -139.83 SS G_CDS: -5.76 Total: -145.59 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -89.27 3.19 -86.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079754447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.627 kcal (2) G-P(sol) polarization free energy of solvation -89.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds