Wall clock time and date at job start Tue Mar 31 2020 20:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47191 * 2 1 4 4 C 1.53003 * 109.47535 * 239.99971 * 2 1 3 5 5 N 1.46510 * 109.46973 * 119.99730 * 2 1 3 6 6 N 1.28714 * 125.32137 * 359.97438 * 5 2 1 7 7 N 1.28975 * 108.98789 * 180.02562 * 6 5 2 8 8 C 1.34183 * 107.25443 * 359.97438 * 7 6 5 9 9 C 1.48007 * 126.69783 * 179.97438 * 8 7 6 10 10 O 1.21543 * 119.99911 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00113 * 359.74916 * 9 8 7 12 12 C 1.46504 * 119.99858 * 180.27108 * 11 9 8 13 13 H 1.09001 * 109.47227 * 35.00352 * 12 11 9 14 14 C 1.52997 * 109.47320 * 275.00341 * 12 11 9 15 15 C 1.53000 * 109.47350 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46939 * 59.99752 * 15 14 12 17 17 C 1.52997 * 109.47302 * 300.00277 * 16 15 14 18 18 C 1.53000 * 109.46977 * 60.00009 * 17 16 15 19 19 H 1.09001 * 109.47372 * 60.00111 * 18 17 16 20 20 N 1.46508 * 109.47047 * 180.02562 * 18 17 16 21 21 C 1.36939 * 119.99528 * 274.99856 * 20 18 17 22 22 H 1.07997 * 120.00088 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99639 * 180.02562 * 21 20 18 24 24 N 1.31609 * 120.00290 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99630 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47405 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47034 * 119.99934 * 25 23 21 28 28 H 1.48504 * 109.47220 * 239.99745 * 25 23 21 29 29 N 1.28872 * 125.31965 * 180.33158 * 5 2 1 30 30 H 1.08997 * 109.47542 * 299.99851 * 1 2 3 31 31 H 1.09004 * 109.46826 * 60.00044 * 1 2 3 32 32 H 1.09001 * 109.46814 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47502 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47228 * 299.99671 * 3 2 1 35 35 H 1.09005 * 109.47061 * 59.99671 * 3 2 1 36 36 H 1.08993 * 109.46885 * 299.99912 * 4 2 1 37 37 H 1.08993 * 109.46844 * 59.99713 * 4 2 1 38 38 H 1.08998 * 109.46895 * 180.02562 * 4 2 1 39 39 H 0.97001 * 119.99727 * 0.28007 * 11 9 8 40 40 H 1.09001 * 109.46979 * 300.00162 * 14 12 11 41 41 H 1.09000 * 109.47470 * 59.99958 * 14 12 11 42 42 H 1.08998 * 109.47187 * 179.97438 * 15 14 12 43 43 H 1.08993 * 109.47040 * 300.00268 * 15 14 12 44 44 H 1.09001 * 109.47005 * 60.00141 * 16 15 14 45 45 H 1.08998 * 109.46918 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.47024 * 179.97438 * 17 16 15 47 47 H 1.09001 * 109.46979 * 299.99879 * 17 16 15 48 48 H 0.96998 * 120.00320 * 94.99863 * 20 18 17 49 49 H 0.97004 * 120.00741 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1963 6 7 1.2762 -1.2160 2.1073 7 7 2.0307 -1.7386 3.0134 8 6 3.3028 -1.5259 2.6433 9 6 4.5189 -1.9472 3.3743 10 8 5.6182 -1.6884 2.9251 11 7 4.4072 -2.6130 4.5408 12 6 5.6110 -3.0248 5.2673 13 1 6.3882 -2.2714 5.1393 14 6 6.1045 -4.3649 4.7184 15 6 7.3613 -4.7953 5.4776 16 6 7.0333 -4.9429 6.9647 17 6 6.5397 -3.6028 7.5136 18 6 5.2829 -3.1725 6.7544 19 1 4.5056 -3.9258 6.8820 20 7 4.8106 -1.8889 7.2796 21 6 3.9971 -1.8573 8.3807 22 1 3.7034 -2.7786 8.8616 23 6 3.5492 -0.6412 8.8780 24 7 3.9067 0.4814 8.2916 25 14 2.4400 -0.5982 10.3804 26 1 2.1873 -1.9844 10.8491 27 1 3.1002 0.1776 11.4610 28 1 1.1502 0.0466 10.0252 29 7 3.2580 -0.8613 1.5042 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1301 -0.7216 -1.2489 39 1 3.5299 -2.8196 4.8992 40 1 5.3273 -5.1184 4.8464 41 1 6.3378 -4.2599 3.6589 42 1 7.7126 -5.7502 5.0868 43 1 8.1386 -4.0420 5.3500 44 1 6.2559 -5.6962 7.0923 45 1 7.9287 -5.2490 7.5056 46 1 6.3056 -3.7081 8.5729 47 1 7.3171 -2.8494 7.3860 48 1 5.0742 -1.0615 6.8474 49 1 3.5941 1.3313 8.6393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085207002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:52 Heat of formation + Delta-G solvation = 87.367579 kcal Electronic energy + Delta-G solvation = -29998.365892 eV Core-core repulsion = 25998.400635 eV Total energy + Delta-G solvation = -3999.965257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.36445 -39.72291 -38.01927 -37.61496 -34.07038 -33.92066 -33.36021 -32.41827 -31.11233 -29.40282 -28.05530 -27.97617 -27.71979 -25.17640 -24.45911 -23.68265 -22.14107 -21.06128 -20.89841 -20.25670 -19.62999 -17.87463 -17.36098 -17.13909 -16.71232 -15.96000 -15.14046 -14.87244 -14.64105 -14.35815 -14.32119 -13.97386 -13.86164 -13.64352 -13.48949 -13.29178 -12.94089 -12.92077 -12.78874 -12.66247 -12.27151 -12.22150 -12.16527 -12.08288 -11.89778 -11.52420 -11.06145 -11.00051 -10.95526 -10.90213 -10.84677 -10.73432 -10.57985 -10.33161 -10.29557 -10.10337 -10.00197 -9.68613 -9.62314 -8.89778 -8.66917 -6.95406 -5.74137 -3.03831 1.09045 1.61692 1.64101 3.04448 3.37592 3.45057 3.50635 3.52874 3.83827 4.10293 4.18296 4.22981 4.59025 4.62941 4.98525 4.99839 5.03815 5.07454 5.14441 5.16840 5.22571 5.23522 5.27959 5.38709 5.51881 5.53327 5.56181 5.62664 5.68145 5.72961 5.80710 5.83944 5.91170 5.96549 5.99198 6.10250 6.13543 6.32838 6.45312 6.48216 6.50451 6.59571 6.80237 6.89761 7.08036 7.72112 7.73448 8.25235 8.39838 8.42758 9.54776 10.10351 10.45322 11.47985 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009765 B = 0.003595 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.776301 B = 7786.264613 C =10015.584639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.177 3.823 3 C -0.161 4.161 4 C -0.159 4.159 5 N -0.129 5.129 6 N -0.058 5.058 7 N -0.248 5.248 8 C 0.133 3.867 9 C 0.617 3.383 10 O -0.520 6.520 11 N -0.681 5.681 12 C 0.142 3.858 13 H 0.089 0.911 14 C -0.126 4.126 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.132 4.132 18 C 0.173 3.827 19 H 0.054 0.946 20 N -0.722 5.722 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.010 4.010 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.292 1.292 29 N -0.249 5.249 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.414 0.586 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.385 0.615 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 -5.057 -19.097 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.220 4.220 4 C -0.217 4.217 5 N -0.044 5.044 6 N -0.051 5.051 7 N -0.123 5.123 8 C -0.151 4.151 9 C 0.396 3.604 10 O -0.393 6.393 11 N -0.331 5.331 12 C 0.037 3.963 13 H 0.107 0.893 14 C -0.165 4.165 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.173 4.173 18 C 0.062 3.938 19 H 0.071 0.929 20 N -0.362 5.362 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.206 4.206 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.220 1.220 29 N -0.102 5.102 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.250 0.750 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.889 -4.803 -19.385 20.179 hybrid contribution -0.546 0.397 1.052 1.250 sum -3.435 -4.406 -18.333 19.166 Atomic orbital electron populations 1.22103 0.89901 1.04681 1.04434 1.21465 0.96561 0.92891 0.79420 1.22266 1.03588 0.91934 1.04194 1.22245 1.03506 1.01033 0.94962 1.50706 1.01051 1.34588 1.18053 1.78876 1.21725 1.09029 0.95469 1.76194 1.00164 1.17365 1.18548 1.25400 0.94706 1.01799 0.93185 1.16090 0.84450 0.78669 0.81181 1.90811 1.25235 1.55663 1.67618 1.45650 1.11671 1.55422 1.20355 1.21467 0.86427 0.96139 0.92281 0.89311 1.21897 0.97957 0.96783 0.99843 1.21468 0.97277 1.00800 0.95564 1.21593 1.00447 0.98582 0.95210 1.22219 0.98960 0.95327 1.00831 1.20476 0.94505 0.90490 0.88289 0.92855 1.42425 1.58144 1.01937 1.33739 1.19240 1.21318 0.92542 1.03886 0.91057 1.24724 1.01049 0.95406 0.99461 1.69678 1.49184 0.96796 1.42070 0.86166 0.80267 0.77279 0.82746 1.20527 1.21990 1.21963 1.74948 1.02590 1.17081 1.15593 0.90377 0.89217 0.90527 0.90184 0.89091 0.91122 0.91355 0.89085 0.90241 0.74971 0.91732 0.91779 0.92280 0.91864 0.92299 0.92625 0.91448 0.92364 0.78144 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 7.90 37.16 0.29 -0.72 16 2 C 0.18 1.54 1.30 -131.81 -0.17 1.36 16 3 C -0.16 -1.23 8.65 37.16 0.32 -0.91 16 4 C -0.16 -1.06 8.67 37.16 0.32 -0.74 16 5 N -0.13 -1.76 3.72 0.53 0.00 -1.76 16 6 N -0.06 -0.90 12.21 60.35 0.74 -0.17 16 7 N -0.25 -4.41 12.26 32.10 0.39 -4.01 16 8 C 0.13 2.41 8.14 -156.25 -1.27 1.13 16 9 C 0.62 11.69 7.80 -12.26 -0.10 11.60 16 10 O -0.52 -10.86 16.76 5.33 0.09 -10.77 16 11 N -0.68 -12.18 4.91 -54.70 -0.27 -12.44 16 12 C 0.14 2.45 1.98 -67.93 -0.13 2.32 16 13 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 14 C -0.13 -1.79 5.49 -26.73 -0.15 -1.94 16 15 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 16 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 17 C -0.13 -2.28 5.50 -26.73 -0.15 -2.42 16 18 C 0.17 3.29 2.29 -67.93 -0.16 3.14 16 19 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 20 N -0.72 -17.54 4.95 -53.42 -0.26 -17.80 16 21 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 25 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 29 N -0.25 -4.08 11.85 32.11 0.38 -3.69 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.41 7.41 8.35 -40.82 -0.34 7.07 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.38 10.33 7.80 -40.82 -0.32 10.01 16 49 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -33.21 401.94 -7.12 -40.34 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -8.20 Total: 11.90 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.75 Total: 2.44 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: 1.70 Total: -67.35 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.21 -7.12 -40.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085207002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.703 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds