Wall clock time and date at job start Tue Mar 31 2020 19:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00009 * 2 1 4 4 C 1.52997 * 109.47220 * 175.21900 * 3 2 1 5 5 N 1.46501 * 109.47208 * 184.88767 * 4 3 2 6 6 N 1.28440 * 125.18822 * 264.17561 * 5 4 3 7 7 C 1.30862 * 110.92768 * 179.88004 * 6 5 4 8 8 C 1.39671 * 107.86157 * 0.37765 * 7 6 5 9 9 C 1.36597 * 125.19126 * 84.47788 * 5 4 3 10 10 C 1.47165 * 126.88256 * 359.97438 * 9 5 4 11 11 O 1.21627 * 120.00076 * 5.12985 * 10 9 5 12 12 N 1.34780 * 119.99663 * 185.13201 * 10 9 5 13 13 C 1.46501 * 119.99773 * 185.09020 * 12 10 9 14 14 H 1.09001 * 109.47138 * 33.06453 * 13 12 10 15 15 C 1.53001 * 109.47134 * 273.06500 * 13 12 10 16 16 C 1.53005 * 109.46677 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47430 * 59.99791 * 16 15 13 18 18 C 1.52994 * 109.46943 * 300.00214 * 17 16 15 19 19 C 1.52994 * 109.47695 * 59.99836 * 18 17 16 20 20 H 1.09001 * 109.47086 * 59.99904 * 19 18 17 21 21 N 1.46497 * 109.47293 * 179.97438 * 19 18 17 22 22 C 1.36935 * 120.00436 * 274.60454 * 21 19 18 23 23 H 1.08004 * 119.99768 * 5.15339 * 22 21 19 24 24 C 1.38809 * 120.00427 * 185.15962 * 22 21 19 25 25 N 1.31619 * 119.99824 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00169 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46873 * 60.00194 * 26 24 22 28 28 H 1.48507 * 109.46899 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47246 * 299.99780 * 26 24 22 30 30 H 1.09005 * 109.46966 * 304.79668 * 1 2 3 31 31 H 1.08992 * 109.47547 * 64.79796 * 1 2 3 32 32 H 1.09004 * 109.47215 * 184.80377 * 1 2 3 33 33 H 1.09003 * 109.47176 * 295.21699 * 3 2 1 34 34 H 1.08998 * 109.47102 * 55.21155 * 3 2 1 35 35 H 1.09004 * 109.46931 * 304.88390 * 4 3 2 36 36 H 1.08996 * 109.47428 * 64.88690 * 4 3 2 37 37 H 1.07998 * 126.07308 * 180.13690 * 7 6 5 38 38 H 1.07997 * 127.32730 * 179.75985 * 8 7 6 39 39 H 0.97004 * 120.00343 * 5.09544 * 12 10 9 40 40 H 1.09001 * 109.47070 * 299.99995 * 15 13 12 41 41 H 1.08999 * 109.47393 * 60.00418 * 15 13 12 42 42 H 1.09000 * 109.46861 * 179.97438 * 16 15 13 43 43 H 1.09001 * 109.47177 * 299.99697 * 16 15 13 44 44 H 1.09003 * 109.46355 * 60.00153 * 17 16 15 45 45 H 1.08995 * 109.47135 * 179.97438 * 17 16 15 46 46 H 1.09001 * 109.46736 * 180.02562 * 18 17 16 47 47 H 1.09001 * 109.46932 * 299.99646 * 18 17 16 48 48 H 0.97006 * 119.99640 * 94.60757 * 21 19 18 49 49 H 0.97001 * 120.00096 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5309 1.1867 0.1202 5 7 4.1174 2.5241 0.2376 6 7 4.5972 3.2100 -0.7365 7 6 5.0463 4.3656 -0.3179 8 6 4.8439 4.4293 1.0626 9 6 4.2426 3.2294 1.4007 10 6 3.8226 2.7995 2.7440 11 8 3.3889 1.6761 2.9151 12 7 3.9185 3.6506 3.7846 13 6 3.6065 3.1891 5.1396 14 1 3.8881 2.1409 5.2402 15 6 2.1061 3.3411 5.3973 16 6 1.7804 2.8597 6.8126 17 6 2.5598 3.6973 7.8284 18 6 4.0602 3.5453 7.5705 19 6 4.3860 4.0268 6.1553 20 1 4.1043 5.0749 6.0543 21 7 5.8227 3.8817 5.9087 22 6 6.6870 4.8713 6.2946 23 1 6.3215 5.7196 6.8542 24 6 8.0330 4.7842 5.9664 25 7 8.4784 3.7507 5.2839 26 14 9.2118 6.1345 6.4921 27 1 9.2101 6.2441 7.9730 28 1 10.5818 5.8061 6.0222 29 1 8.7810 7.4261 5.8996 30 1 -0.3633 0.5865 0.8439 31 1 -0.3634 0.4375 -0.9298 32 1 -0.3634 -1.0241 0.0861 33 1 1.7581 1.8155 -0.9297 34 1 1.6224 1.8759 0.8440 35 1 3.7807 0.6015 1.0052 36 1 3.9280 0.6924 -0.7663 37 1 5.4973 5.1323 -0.9304 38 1 5.1020 5.2419 1.7255 39 1 4.1941 4.5688 3.6365 40 1 1.8245 4.3893 5.2967 41 1 1.5508 2.7446 4.6735 42 1 0.7115 2.9684 6.9964 43 1 2.0620 1.8115 6.9137 44 1 2.2781 4.7455 7.7273 45 1 2.3275 3.3546 8.8366 46 1 4.6155 4.1417 8.2944 47 1 4.3418 2.4972 7.6716 48 1 6.1618 3.0846 5.4720 49 1 9.4190 3.6896 5.0548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085238120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:35 Heat of formation + Delta-G solvation = -1.504733 kcal Electronic energy + Delta-G solvation = -30281.190089 eV Core-core repulsion = 26245.078289 eV Total energy + Delta-G solvation = -4036.111801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.46456 -39.59848 -38.16848 -37.74378 -34.31784 -34.03964 -33.49597 -31.22770 -31.00490 -29.37203 -29.09108 -27.65750 -26.49592 -23.99504 -23.72445 -23.16700 -21.97814 -21.21161 -20.83551 -20.02066 -19.34580 -17.93724 -17.09131 -16.77748 -16.26915 -16.07976 -15.95481 -15.54157 -14.97106 -14.84215 -14.45526 -14.31655 -14.00144 -13.85630 -13.69523 -13.53512 -13.47390 -12.99735 -12.86025 -12.67588 -12.26886 -12.20180 -12.13084 -11.66986 -11.52787 -11.10497 -10.94910 -10.88866 -10.79176 -10.76013 -10.59397 -10.37749 -10.22101 -9.95858 -9.85479 -9.73642 -9.66789 -9.16913 -8.96893 -8.91730 -8.63200 -7.01028 -5.79994 -3.10718 1.38050 2.25735 2.69672 3.27862 3.40247 3.45410 3.46821 3.49749 3.80979 4.49932 4.53139 4.72017 4.77361 4.92960 5.01730 5.06180 5.10326 5.11799 5.13600 5.22559 5.28178 5.41536 5.47024 5.49535 5.50783 5.60470 5.66673 5.73596 5.78020 5.84932 5.89136 5.90779 5.93599 6.08119 6.27547 6.40973 6.42459 6.45023 6.53978 6.56316 6.71050 6.78435 6.84104 6.86214 7.02380 7.65364 7.75492 8.11210 8.36825 8.40825 9.48544 10.04241 10.39616 11.41449 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.003871 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.427758 B = 7232.060303 C = 9387.244589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.384 6.384 3 C 0.058 3.942 4 C 0.122 3.878 5 N -0.259 5.259 6 N -0.282 5.282 7 C -0.001 4.001 8 C -0.178 4.178 9 C -0.029 4.029 10 C 0.590 3.410 11 O -0.547 6.547 12 N -0.688 5.688 13 C 0.143 3.857 14 H 0.086 0.914 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.133 4.133 19 C 0.173 3.827 20 H 0.052 0.948 21 N -0.721 5.721 22 C -0.244 4.244 23 H 0.069 0.931 24 C -0.008 4.008 25 N -0.927 5.927 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.406 0.594 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.384 0.616 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.203 -1.257 -7.605 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C -0.020 4.020 4 C 0.001 3.999 5 N -0.048 5.048 6 N -0.114 5.114 7 C -0.178 4.178 8 C -0.207 4.207 9 C -0.157 4.157 10 C 0.375 3.625 11 O -0.426 6.426 12 N -0.337 5.337 13 C 0.038 3.962 14 H 0.104 0.896 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.174 4.174 19 C 0.062 3.938 20 H 0.070 0.930 21 N -0.362 5.362 22 C -0.375 4.375 23 H 0.087 0.913 24 C -0.204 4.204 25 N -0.574 5.574 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.212 1.212 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.203 0.797 38 H 0.182 0.818 39 H 0.241 0.759 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.218 0.782 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.459 -2.884 -8.406 18.705 hybrid contribution 1.060 1.704 0.789 2.156 sum -15.399 -1.179 -7.617 17.221 Atomic orbital electron populations 1.22763 0.80290 1.03011 1.00111 1.87799 1.20239 1.26614 1.95490 1.22620 0.92793 0.85606 1.00986 1.21761 0.92291 0.78824 1.06979 1.45400 1.41865 1.14431 1.03124 1.73175 1.14972 1.06427 1.16843 1.23565 1.04400 0.95442 0.94378 1.22369 1.04012 0.97778 0.96556 1.21527 1.09856 0.94894 0.89449 1.16872 0.78053 0.84916 0.82688 1.90774 1.46985 1.19831 1.85029 1.45584 1.67355 1.14407 1.06346 1.21387 0.93956 1.00434 0.80404 0.89558 1.21878 0.95959 1.01368 0.97088 1.21472 0.99275 1.00094 0.94311 1.21582 0.96404 0.99692 0.98102 1.22221 0.93789 1.01795 0.99596 1.20469 0.85702 0.96587 0.91020 0.93012 1.42390 0.99476 1.22622 1.71676 1.19127 0.89133 1.00486 1.28748 0.91294 1.24744 0.97194 0.97958 1.00547 1.69662 1.14526 1.29878 1.43373 0.86325 0.80550 0.81500 0.78092 1.21355 1.21776 1.21243 0.93733 0.94079 0.89261 0.92792 0.92292 0.85782 0.87614 0.79666 0.81827 0.75857 0.91959 0.91915 0.92372 0.91931 0.92348 0.92653 0.91553 0.92439 0.78189 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.71 10.70 -35.23 -0.38 -5.09 16 3 C 0.06 0.71 6.27 37.16 0.23 0.94 16 4 C 0.12 1.64 6.06 -4.04 -0.02 1.62 16 5 N -0.26 -3.91 3.35 -57.14 -0.19 -4.10 16 6 N -0.28 -4.20 11.90 30.59 0.36 -3.83 16 7 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 8 C -0.18 -2.55 10.50 -38.98 -0.41 -2.96 16 9 C -0.03 -0.47 6.96 -82.06 -0.57 -1.04 16 10 C 0.59 9.98 7.77 -12.63 -0.10 9.88 16 11 O -0.55 -10.18 14.48 5.25 0.08 -10.11 16 12 N -0.69 -10.99 4.87 -54.96 -0.27 -11.26 16 13 C 0.14 2.32 1.97 -67.93 -0.13 2.18 16 14 H 0.09 1.60 7.59 -51.93 -0.39 1.20 16 15 C -0.12 -1.66 5.51 -26.73 -0.15 -1.81 16 16 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 17 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 18 C -0.13 -2.20 5.51 -26.74 -0.15 -2.34 16 19 C 0.17 3.11 2.30 -67.93 -0.16 2.95 16 20 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 21 N -0.72 -16.68 4.94 -53.43 -0.26 -16.95 16 22 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 23 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 26 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.12 1.86 6.53 -51.93 -0.34 1.52 16 36 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.16 2.10 7.62 -52.49 -0.40 1.70 16 39 H 0.41 6.17 7.70 -40.82 -0.31 5.86 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.38 9.90 7.82 -40.82 -0.32 9.59 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -31.03 400.82 -8.10 -39.13 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -8.07 Total: 15.39 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.11 Total: 0.59 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.37 Total: -62.54 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.30 Total: -15.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.03 -8.10 -39.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085238120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.627 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds