Wall clock time and date at job start Tue Mar 31 2020 19:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00009 * 2 1 4 4 C 1.52997 * 109.47220 * 175.21900 * 3 2 1 5 5 N 1.46501 * 109.47208 * 184.88767 * 4 3 2 6 6 N 1.28440 * 125.18822 * 264.17561 * 5 4 3 7 7 C 1.30862 * 110.92768 * 179.88004 * 6 5 4 8 8 C 1.39671 * 107.86157 * 0.37765 * 7 6 5 9 9 C 1.36597 * 125.19126 * 84.47788 * 5 4 3 10 10 C 1.47165 * 126.88256 * 359.97438 * 9 5 4 11 11 O 1.21627 * 120.00076 * 5.12985 * 10 9 5 12 12 N 1.34780 * 119.99663 * 185.13201 * 10 9 5 13 13 C 1.46501 * 119.99773 * 185.09020 * 12 10 9 14 14 H 1.09001 * 109.47138 * 33.06453 * 13 12 10 15 15 C 1.53001 * 109.47134 * 273.06500 * 13 12 10 16 16 C 1.53005 * 109.46677 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47430 * 59.99791 * 16 15 13 18 18 C 1.52994 * 109.46943 * 300.00214 * 17 16 15 19 19 C 1.52994 * 109.47695 * 59.99836 * 18 17 16 20 20 H 1.09001 * 109.47086 * 59.99904 * 19 18 17 21 21 N 1.46497 * 109.47293 * 179.97438 * 19 18 17 22 22 C 1.36935 * 120.00436 * 274.60454 * 21 19 18 23 23 H 1.08004 * 119.99768 * 5.15339 * 22 21 19 24 24 C 1.38809 * 120.00427 * 185.15962 * 22 21 19 25 25 N 1.31619 * 119.99824 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00169 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46873 * 60.00194 * 26 24 22 28 28 H 1.48507 * 109.46899 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47246 * 299.99780 * 26 24 22 30 30 H 1.09005 * 109.46966 * 304.79668 * 1 2 3 31 31 H 1.08992 * 109.47547 * 64.79796 * 1 2 3 32 32 H 1.09004 * 109.47215 * 184.80377 * 1 2 3 33 33 H 1.09003 * 109.47176 * 295.21699 * 3 2 1 34 34 H 1.08998 * 109.47102 * 55.21155 * 3 2 1 35 35 H 1.09004 * 109.46931 * 304.88390 * 4 3 2 36 36 H 1.08996 * 109.47428 * 64.88690 * 4 3 2 37 37 H 1.07998 * 126.07308 * 180.13690 * 7 6 5 38 38 H 1.07997 * 127.32730 * 179.75985 * 8 7 6 39 39 H 0.97004 * 120.00343 * 5.09544 * 12 10 9 40 40 H 1.09001 * 109.47070 * 299.99995 * 15 13 12 41 41 H 1.08999 * 109.47393 * 60.00418 * 15 13 12 42 42 H 1.09000 * 109.46861 * 179.97438 * 16 15 13 43 43 H 1.09001 * 109.47177 * 299.99697 * 16 15 13 44 44 H 1.09003 * 109.46355 * 60.00153 * 17 16 15 45 45 H 1.08995 * 109.47135 * 179.97438 * 17 16 15 46 46 H 1.09001 * 109.46736 * 180.02562 * 18 17 16 47 47 H 1.09001 * 109.46932 * 299.99646 * 18 17 16 48 48 H 0.97006 * 119.99640 * 94.60757 * 21 19 18 49 49 H 0.97001 * 120.00096 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5309 1.1867 0.1202 5 7 4.1174 2.5241 0.2376 6 7 4.5972 3.2100 -0.7365 7 6 5.0463 4.3656 -0.3179 8 6 4.8439 4.4293 1.0626 9 6 4.2426 3.2294 1.4007 10 6 3.8226 2.7995 2.7440 11 8 3.3889 1.6761 2.9151 12 7 3.9185 3.6506 3.7846 13 6 3.6065 3.1891 5.1396 14 1 3.8881 2.1409 5.2402 15 6 2.1061 3.3411 5.3973 16 6 1.7804 2.8597 6.8126 17 6 2.5598 3.6973 7.8284 18 6 4.0602 3.5453 7.5705 19 6 4.3860 4.0268 6.1553 20 1 4.1043 5.0749 6.0543 21 7 5.8227 3.8817 5.9087 22 6 6.6870 4.8713 6.2946 23 1 6.3215 5.7196 6.8542 24 6 8.0330 4.7842 5.9664 25 7 8.4784 3.7507 5.2839 26 14 9.2118 6.1345 6.4921 27 1 9.2101 6.2441 7.9730 28 1 10.5818 5.8061 6.0222 29 1 8.7810 7.4261 5.8996 30 1 -0.3633 0.5865 0.8439 31 1 -0.3634 0.4375 -0.9298 32 1 -0.3634 -1.0241 0.0861 33 1 1.7581 1.8155 -0.9297 34 1 1.6224 1.8759 0.8440 35 1 3.7807 0.6015 1.0052 36 1 3.9280 0.6924 -0.7663 37 1 5.4973 5.1323 -0.9304 38 1 5.1020 5.2419 1.7255 39 1 4.1941 4.5688 3.6365 40 1 1.8245 4.3893 5.2967 41 1 1.5508 2.7446 4.6735 42 1 0.7115 2.9684 6.9964 43 1 2.0620 1.8115 6.9137 44 1 2.2781 4.7455 7.7273 45 1 2.3275 3.3546 8.8366 46 1 4.6155 4.1417 8.2944 47 1 4.3418 2.4972 7.6716 48 1 6.1618 3.0846 5.4720 49 1 9.4190 3.6896 5.0548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085238120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:34 Heat of formation + Delta-G solvation = -22.437199 kcal Electronic energy + Delta-G solvation = -30282.097789 eV Core-core repulsion = 26245.078289 eV Total energy + Delta-G solvation = -4037.019500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.59645 -40.93185 -39.15854 -39.00215 -35.79104 -35.50442 -34.68041 -32.98513 -32.23152 -30.43154 -30.30797 -29.20391 -27.29458 -25.66015 -25.04132 -24.28344 -23.17148 -22.59550 -22.03653 -21.27398 -20.57897 -19.33036 -18.82031 -17.81396 -17.33685 -17.21177 -17.13351 -16.80957 -16.41063 -15.97322 -15.81993 -15.51566 -15.40232 -15.17899 -14.95678 -14.70029 -14.57740 -14.53348 -14.10583 -13.87891 -13.60602 -13.52914 -13.14689 -12.89778 -12.75983 -12.62570 -12.36697 -12.26911 -12.15454 -12.05209 -11.96450 -11.90168 -11.67013 -11.42656 -11.23173 -11.03368 -10.83045 -10.78665 -10.35752 -10.10974 -9.91823 -8.95756 -7.88034 -5.17371 0.16896 1.16877 1.51056 1.52490 1.58538 1.59906 2.04660 2.23964 2.59535 2.87842 3.44150 3.45019 3.55315 3.71104 3.75889 3.84263 3.93275 4.08395 4.12922 4.16599 4.27760 4.32865 4.40454 4.43125 4.45056 4.47685 4.53151 4.55068 4.60881 4.67513 4.71506 4.77759 4.84182 4.96671 5.02770 5.15367 5.25660 5.31030 5.32523 5.45763 5.48093 5.53591 5.58677 5.65221 5.67953 5.98709 6.31184 6.45073 6.97552 7.10741 7.38335 8.11964 8.36257 9.34316 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.003871 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.427758 B = 7232.060303 C = 9387.244589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.070 3.930 4 C 0.121 3.879 5 N -0.264 5.264 6 N -0.293 5.293 7 C 0.002 3.998 8 C -0.178 4.178 9 C -0.053 4.053 10 C 0.587 3.413 11 O -0.571 6.571 12 N -0.685 5.685 13 C 0.151 3.849 14 H 0.057 0.943 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.128 4.128 19 C 0.173 3.827 20 H 0.061 0.939 21 N -0.731 5.731 22 C -0.231 4.231 23 H 0.079 0.921 24 C -0.070 4.070 25 N -0.967 5.967 26 Si 0.966 3.034 27 H -0.283 1.283 28 H -0.304 1.304 29 H -0.274 1.274 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.221 0.779 38 H 0.176 0.824 39 H 0.410 0.590 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.041 0.959 48 H 0.367 0.633 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.037 0.407 -7.601 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.008 4.008 4 C 0.000 4.000 5 N -0.053 5.053 6 N -0.125 5.125 7 C -0.174 4.174 8 C -0.207 4.207 9 C -0.181 4.181 10 C 0.373 3.627 11 O -0.451 6.451 12 N -0.333 5.333 13 C 0.046 3.954 14 H 0.076 0.924 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.148 4.148 18 C -0.169 4.169 19 C 0.064 3.936 20 H 0.079 0.921 21 N -0.370 5.370 22 C -0.363 4.363 23 H 0.097 0.903 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.796 3.204 27 H -0.209 1.209 28 H -0.231 1.231 29 H -0.199 1.199 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.238 0.762 38 H 0.194 0.806 39 H 0.246 0.754 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.199 0.801 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.358 -1.186 -8.373 20.212 hybrid contribution 1.562 1.162 0.802 2.106 sum -16.796 -0.024 -7.570 18.423 Atomic orbital electron populations 1.22994 0.78502 1.04346 1.00999 1.87772 1.22239 1.26565 1.95609 1.22450 0.91769 0.85674 1.00904 1.21792 0.93378 0.78295 1.06533 1.45525 1.42063 1.14769 1.02923 1.73175 1.15279 1.07061 1.16951 1.24168 1.03395 0.95519 0.94288 1.22635 1.03209 0.97442 0.97385 1.21543 1.11300 0.95974 0.89258 1.17070 0.77702 0.84616 0.83323 1.90754 1.48138 1.20751 1.85492 1.45557 1.67166 1.14469 1.06146 1.21266 0.95805 0.98280 0.80052 0.92447 1.21813 0.93162 1.02451 0.97906 1.21476 1.00889 0.99388 0.93040 1.21517 0.93183 1.00831 0.99277 1.22091 0.96719 1.00327 0.97745 1.20678 0.83113 0.97418 0.92416 0.92139 1.42555 1.01510 1.21434 1.71479 1.19510 0.89467 1.00525 1.26801 0.90320 1.25456 0.98982 1.00073 1.01744 1.69836 1.14060 1.32080 1.45816 0.85332 0.77917 0.79497 0.77697 1.20937 1.23092 1.19944 0.93710 0.92448 0.87628 0.91542 0.93682 0.87898 0.86235 0.76235 0.80640 0.75372 0.90211 0.92342 0.89473 0.92765 0.90908 0.90895 0.93071 0.94001 0.80133 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.40 -9.80 10.70 -148.98 -1.59 -11.39 16 3 C 0.07 1.71 6.27 71.98 0.45 2.16 16 4 C 0.12 3.30 6.06 86.38 0.52 3.82 16 5 N -0.26 -7.96 3.35 -334.69 -1.12 -9.08 16 6 N -0.29 -8.43 11.90 -57.14 -0.68 -9.11 16 7 C 0.00 0.06 12.03 85.18 1.02 1.08 16 8 C -0.18 -4.94 10.50 22.66 0.24 -4.70 16 9 C -0.05 -1.70 6.96 40.79 0.28 -1.41 16 10 C 0.59 20.35 7.77 86.59 0.67 21.03 16 11 O -0.57 -22.08 14.48 -4.12 -0.06 -22.14 16 12 N -0.68 -22.03 4.87 -446.04 -2.17 -24.20 16 13 C 0.15 4.89 1.97 44.99 0.09 4.98 16 14 H 0.06 2.21 7.59 -2.39 -0.02 2.19 16 15 C -0.11 -2.87 5.51 30.60 0.17 -2.70 16 16 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16 17 C -0.11 -2.55 5.92 30.59 0.18 -2.36 16 18 C -0.13 -4.13 5.51 30.59 0.17 -3.96 16 19 C 0.17 6.12 2.30 44.99 0.10 6.23 16 20 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 21 N -0.73 -34.25 4.94 -322.95 -1.60 -35.85 16 22 C -0.23 -11.92 9.93 84.03 0.83 -11.09 16 23 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 25 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 26 Si 0.97 44.58 29.55 68.60 2.03 46.61 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 29 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 30 H 0.04 0.73 8.12 -2.38 -0.02 0.71 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 35 H 0.10 3.26 6.53 -2.38 -0.02 3.24 16 36 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.22 3.72 8.06 -2.91 -0.02 3.69 16 38 H 0.18 4.32 7.62 -2.91 -0.02 4.29 16 39 H 0.41 12.36 7.70 -92.71 -0.71 11.64 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.37 19.60 7.82 -92.70 -0.72 18.88 16 49 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -67.98 400.82 1.24 -66.74 By element: Atomic # 1 Polarization: 47.52 SS G_CDS: -0.48 Total: 47.03 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.64 Total: 9.14 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -5.29 Total: -135.99 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.65 Total: -33.53 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.98 1.24 -66.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085238120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.306 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds