Wall clock time and date at job start Tue Mar 31 2020 19:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99827 * 2 1 4 4 C 1.53004 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47035 * 180.02562 * 4 3 2 6 6 C 1.35040 * 124.88512 * 125.00401 * 5 4 3 7 7 C 1.35364 * 107.23119 * 180.02562 * 6 5 4 8 8 C 1.41501 * 105.50091 * 359.97438 * 7 6 5 9 9 C 1.47715 * 126.51683 * 179.97438 * 8 7 6 10 10 O 1.21565 * 120.00218 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99842 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99793 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99824 * 12 11 9 14 14 C 1.53000 * 109.47023 * 274.99565 * 12 11 9 15 15 C 1.53002 * 109.47233 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46817 * 60.00194 * 15 14 12 17 17 C 1.53005 * 109.47452 * 300.00239 * 16 15 14 18 18 C 1.52997 * 109.47007 * 154.99772 * 12 11 9 19 19 H 1.09002 * 109.47153 * 60.00089 * 18 12 11 20 20 N 1.46500 * 109.47473 * 299.99846 * 18 12 11 21 21 C 1.36942 * 120.00130 * 154.99556 * 20 18 12 22 22 H 1.08000 * 119.99641 * 0.02562 * 21 20 18 23 23 C 1.38804 * 119.99697 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00654 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99901 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46815 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46998 * 120.00219 * 25 23 21 28 28 H 1.48492 * 109.47251 * 240.00552 * 25 23 21 29 29 N 1.28471 * 124.88611 * 305.32982 * 5 4 3 30 30 H 1.08999 * 109.47080 * 299.99675 * 1 2 3 31 31 H 1.09001 * 109.47232 * 60.00290 * 1 2 3 32 32 H 1.09000 * 109.46666 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46982 * 60.00423 * 3 2 1 34 34 H 1.09004 * 109.47355 * 300.00362 * 3 2 1 35 35 H 1.08998 * 109.46842 * 60.00239 * 4 3 2 36 36 H 1.08995 * 109.47080 * 300.00193 * 4 3 2 37 37 H 1.08000 * 126.38196 * 0.05130 * 6 5 4 38 38 H 1.07996 * 127.25186 * 179.97438 * 7 6 5 39 39 H 0.97004 * 119.99983 * 359.97438 * 11 9 8 40 40 H 1.08992 * 109.47399 * 300.00063 * 14 12 11 41 41 H 1.09004 * 109.46724 * 60.00549 * 14 12 11 42 42 H 1.08993 * 109.47662 * 180.02562 * 15 14 12 43 43 H 1.09002 * 109.47075 * 300.00932 * 15 14 12 44 44 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 45 45 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 46 46 H 1.09000 * 109.47360 * 180.02562 * 17 16 15 47 47 H 1.09002 * 109.46935 * 300.00125 * 17 16 15 48 48 H 0.97000 * 119.99491 * 335.00093 * 20 18 12 49 49 H 0.96993 * 120.00293 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0262 2.9697 0.9073 7 6 5.3350 4.2443 0.5720 8 6 4.5722 4.5262 -0.5859 9 6 4.5565 5.7959 -1.3406 10 8 5.2476 6.7276 -0.9771 11 7 3.7751 5.9218 -2.4315 12 6 3.7591 7.1813 -3.1796 13 1 4.7546 7.6252 -3.1651 14 6 2.7614 8.1451 -2.5343 15 6 2.7451 9.4608 -3.3152 16 6 2.3293 9.1896 -4.7624 17 6 3.3270 8.2257 -5.4078 18 6 3.3429 6.9097 -4.6266 19 1 2.3475 6.4658 -4.6412 20 7 4.2983 5.9868 -5.2446 21 6 3.9098 5.2035 -6.2986 22 1 2.8993 5.2665 -6.6745 23 6 4.8152 4.3295 -6.8844 24 7 6.0468 4.2531 -6.4265 25 14 4.2856 3.2616 -8.3227 26 1 2.8618 3.5350 -8.6443 27 1 5.1281 3.5712 -9.5057 28 1 4.4459 1.8301 -7.9618 29 7 3.8730 3.4427 -0.8591 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8909 36 1 3.8575 0.6437 0.8890 37 1 5.4220 2.4134 1.7441 38 1 6.0195 4.9065 1.0811 39 1 3.2233 5.1785 -2.7213 40 1 1.7660 7.7013 -2.5489 41 1 3.0580 8.3387 -1.5034 42 1 2.0347 10.1476 -2.8554 43 1 3.7407 9.9044 -3.3004 44 1 1.3338 8.7459 -4.7774 45 1 2.3181 10.1268 -5.3190 46 1 3.0310 8.0329 -6.4390 47 1 4.3225 8.6694 -5.3929 48 1 5.2059 5.9305 -4.9070 49 1 6.6793 3.6421 -6.8356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085269311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:40 Heat of formation + Delta-G solvation = -0.111099 kcal Electronic energy + Delta-G solvation = -29669.789219 eV Core-core repulsion = 25633.737851 eV Total energy + Delta-G solvation = -4036.051368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.61118 -39.45657 -38.31928 -37.60823 -34.06796 -33.97008 -33.62221 -31.10273 -30.75311 -29.87332 -28.99080 -27.63987 -26.63587 -24.47942 -23.66224 -22.68448 -21.53098 -21.26026 -20.97011 -19.82062 -19.23313 -17.90399 -17.18424 -16.87998 -16.49637 -16.22318 -15.81306 -15.75698 -15.07387 -14.82248 -14.37907 -14.12970 -13.99726 -13.73961 -13.62501 -13.43931 -13.28512 -13.13523 -12.89142 -12.52838 -12.35004 -12.07537 -12.01711 -11.92344 -11.69224 -11.03954 -10.89784 -10.81715 -10.76515 -10.69999 -10.52459 -10.28367 -10.10164 -10.09541 -9.77467 -9.62097 -9.54958 -9.22148 -9.02998 -8.87872 -8.45850 -6.93120 -5.73111 -3.02482 1.74178 2.18905 2.23883 3.43345 3.44340 3.49020 3.51491 3.65608 3.80775 4.25672 4.51376 4.59323 4.74359 4.76576 4.87160 4.97679 5.02620 5.12638 5.18193 5.23738 5.30241 5.33127 5.36842 5.48668 5.57788 5.58777 5.72122 5.77659 5.81896 5.88950 5.95757 6.01676 6.03668 6.16950 6.39088 6.43983 6.50964 6.55094 6.57796 6.62360 6.63812 6.76087 6.91632 6.97089 7.15553 7.72127 7.83984 8.14386 8.43874 8.67312 9.55688 10.12780 10.47948 11.48993 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007284 B = 0.003916 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3843.002396 B = 7147.933891 C = 9036.654685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.284 5.284 6 C -0.020 4.020 7 C -0.179 4.179 8 C -0.005 4.005 9 C 0.604 3.396 10 O -0.544 6.544 11 N -0.693 5.693 12 C 0.140 3.860 13 H 0.085 0.915 14 C -0.124 4.124 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.174 3.826 19 H 0.050 0.950 20 N -0.721 5.721 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 N -0.254 5.254 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.409 0.591 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.385 0.615 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 -2.618 16.769 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.074 5.074 6 C -0.162 4.162 7 C -0.207 4.207 8 C -0.166 4.166 9 C 0.388 3.612 10 O -0.420 6.420 11 N -0.341 5.341 12 C 0.035 3.965 13 H 0.104 0.896 14 C -0.163 4.163 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.174 4.174 18 C 0.063 3.937 19 H 0.068 0.932 20 N -0.362 5.362 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.576 5.576 25 Si 0.734 3.266 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 N -0.089 5.089 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.198 0.802 38 H 0.180 0.820 39 H 0.244 0.756 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.929 -2.805 16.115 19.135 hybrid contribution 0.287 -0.638 -0.336 0.776 sum -9.641 -3.442 15.779 18.809 Atomic orbital electron populations 1.22786 0.79893 1.03090 1.00481 1.87771 1.20625 1.26792 1.95627 1.22652 0.92235 0.85514 1.02351 1.21649 0.92982 0.78742 1.06182 1.45288 1.31368 1.11410 1.19317 1.22829 0.98408 0.96574 0.98402 1.21769 1.04548 0.95982 0.98411 1.22081 1.01257 0.94178 0.99110 1.16845 0.79599 0.84635 0.80158 1.90749 1.42924 1.39534 1.68836 1.45762 1.44633 1.16817 1.26907 1.21343 1.00216 0.83326 0.91591 0.89649 1.21878 0.99378 0.95601 0.99455 1.21470 1.01445 0.96571 0.95653 1.21583 0.99528 0.99232 0.95409 1.22229 0.98565 0.96304 1.00273 1.20464 0.94282 0.90508 0.88451 0.93210 1.42417 1.11159 1.44858 1.37732 1.19237 0.96173 1.14481 1.07000 0.91191 1.24719 0.95854 1.00313 0.99812 1.69683 1.03882 1.40605 1.43475 0.86183 0.77527 0.80346 0.82509 1.20612 1.21955 1.22024 1.73568 1.22892 0.97519 1.14954 0.93898 0.93451 0.89199 0.92597 0.90994 0.87739 0.87122 0.80192 0.82047 0.75596 0.92064 0.91856 0.92420 0.91911 0.92425 0.92709 0.91620 0.92409 0.78105 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.78 10.70 -35.23 -0.38 -4.15 16 3 C 0.05 0.47 6.04 37.16 0.22 0.70 16 4 C 0.13 1.15 6.77 -4.04 -0.03 1.12 16 5 N -0.28 -3.50 3.41 -61.33 -0.21 -3.71 16 6 C -0.02 -0.22 11.40 -17.16 -0.20 -0.42 16 7 C -0.18 -2.50 10.81 -39.36 -0.43 -2.92 16 8 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 9 C 0.60 11.47 7.79 -12.39 -0.10 11.37 16 10 O -0.54 -11.46 16.59 5.31 0.09 -11.37 16 11 N -0.69 -12.67 4.91 -54.79 -0.27 -12.94 16 12 C 0.14 2.52 1.98 -67.93 -0.13 2.39 16 13 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 14 C -0.12 -1.85 5.49 -26.73 -0.15 -1.99 16 15 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 16 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 17 C -0.13 -2.36 5.50 -26.70 -0.15 -2.50 16 18 C 0.17 3.40 2.30 -67.91 -0.16 3.24 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.83 4.95 -53.40 -0.26 -18.10 16 21 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 25 Si 0.90 22.43 29.55 -169.99 -5.02 17.40 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 N -0.25 -4.01 11.35 33.42 0.38 -3.63 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.78 8.08 -51.93 -0.42 0.37 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.11 0.67 8.04 -51.93 -0.42 0.25 16 37 H 0.18 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.41 7.51 8.33 -40.82 -0.34 7.17 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.39 10.54 7.80 -40.82 -0.32 10.22 16 49 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -33.73 405.34 -8.18 -41.92 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -8.20 Total: 14.92 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.14 Total: 1.11 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: 0.36 Total: -65.94 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.29 Total: -15.52 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.73 -8.18 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085269311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.807 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds